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1
Microbiota-derived acetate enables the metabolic fitness of the brain innate immune system during health and disease
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Microbiota-derived acetate enables the metabolic fitness of the brain innate immune system during health and disease

Cell metabolism, 2021-11, Vol.33 (11), p.2260-2276.e7 [Peer Reviewed Journal]

2021 Elsevier Inc. ;Copyright © 2021 Elsevier Inc. All rights reserved. ;ISSN: 1550-4131 ;EISSN: 1932-7420 ;DOI: 10.1016/j.cmet.2021.10.010 ;PMID: 34731656

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2
Mass spectrometry-based metabolomics in microbiome investigations
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Mass spectrometry-based metabolomics in microbiome investigations

Nature reviews. Microbiology, 2022-03, Vol.20 (3), p.143-160 [Peer Reviewed Journal]

2021. Springer Nature Limited. ;Springer Nature Limited 2021. ;ISSN: 1740-1526 ;EISSN: 1740-1534 ;DOI: 10.1038/s41579-021-00621-9 ;PMID: 34552265

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3
Spatial structure, cooperation and competition in biofilms
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Spatial structure, cooperation and competition in biofilms

Nature reviews. Microbiology, 2016-09, Vol.14 (9), p.589-600 [Peer Reviewed Journal]

Copyright Nature Publishing Group Sep 2016 ;ISSN: 1740-1526 ;EISSN: 1740-1534 ;DOI: 10.1038/nrmicro.2016.84 ;PMID: 27452230

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4
The Soil-Borne Legacy
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The Soil-Borne Legacy

Cell, 2018-03, Vol.172 (6), p.1178-1180 [Peer Reviewed Journal]

2018 Elsevier Inc. ;Copyright © 2018 Elsevier Inc. All rights reserved. ;ISSN: 0092-8674 ;EISSN: 1097-4172 ;DOI: 10.1016/j.cell.2018.02.024 ;PMID: 29522740

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5
Microglia and early brain development : An intimate journey
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Microglia and early brain development : An intimate journey

Science (American Association for the Advancement of Science), 2018-10, Vol.362 (6411), p.185-189 [Peer Reviewed Journal]

Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 0036-8075 ;EISSN: 1095-9203 ;DOI: 10.1126/science.aat0474 ;PMID: 30309946

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6
Shotgun metagenomics, from sampling to analysis
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Shotgun metagenomics, from sampling to analysis

Nature biotechnology, 2017-09, Vol.35 (9), p.833-844 [Peer Reviewed Journal]

COPYRIGHT 2017 Nature Publishing Group ;COPYRIGHT 2017 Nature Publishing Group ;Copyright Nature Publishing Group Sep 2017 ;ISSN: 1087-0156 ;EISSN: 1546-1696 ;DOI: 10.1038/nbt.3935 ;PMID: 28898207

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7
Role of the microbiome in human development
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Role of the microbiome in human development

Gut, 2019-06, Vol.68 (6), p.1108-1114 [Peer Reviewed Journal]

Author(s) (or their employer(s)) 2019. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. ;2019 Author(s) (or their employer(s)) 2019. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See:http://creativecommons.org/licenses/by-nc/4.0/. ;Author(s) (or their employer(s)) 2019. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. 2019 ;ISSN: 0017-5749 ;EISSN: 1468-3288 ;DOI: 10.1136/gutjnl-2018-317503 ;PMID: 30670574

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8
Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data
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Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data

Nature protocols, 2020-03, Vol.15 (3), p.799-821 [Peer Reviewed Journal]

COPYRIGHT 2020 Nature Publishing Group ;COPYRIGHT 2020 Nature Publishing Group ;2020© Springer Nature Limited 2020 ;Springer Nature Limited 2020. ;ISSN: 1754-2189 ;EISSN: 1750-2799 ;DOI: 10.1038/s41596-019-0264-1 ;PMID: 31942082

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9
Minireview: Gut Microbiota: The Neglected Endocrine Organ
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Minireview: Gut Microbiota: The Neglected Endocrine Organ

Molecular endocrinology (Baltimore, Md.), 2014-08, Vol.28 (8), p.1221-1238 [Peer Reviewed Journal]

Copyright © 2014 by the Endocrine Society ;Copyright © 2014 by the Endocrine Society 2014 ;ISSN: 0888-8809 ;EISSN: 1944-9917 ;DOI: 10.1210/me.2014-1108 ;PMID: 24892638

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10
The role of the microbiome in human health and disease: an introduction for clinicians
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The role of the microbiome in human health and disease: an introduction for clinicians

BMJ (Online), 2017-03, Vol.356, p.j831-j831 [Peer Reviewed Journal]

Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to ;Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions. ;Copyright: 2017 Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions ;ISSN: 0959-8138 ;EISSN: 1756-1833 ;DOI: 10.1136/bmj.j831 ;PMID: 28298355

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11
Diet and Feeding Pattern Affect the Diurnal Dynamics of the Gut Microbiome
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Diet and Feeding Pattern Affect the Diurnal Dynamics of the Gut Microbiome

Cell metabolism, 2014-12, Vol.20 (6), p.1006-1017 [Peer Reviewed Journal]

2014 Elsevier Inc. ;Copyright © 2014 Elsevier Inc. All rights reserved. ;2014 Elsevier Inc. All rights reserved. 2014 ;ISSN: 1550-4131 ;EISSN: 1932-7420 ;DOI: 10.1016/j.cmet.2014.11.008 ;PMID: 25470548

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12
Microbiology: Microbiome science needs a healthy dose of scepticism
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Microbiology: Microbiome science needs a healthy dose of scepticism

Nature (London), 2014-08, Vol.512 (7514), p.247-248 [Peer Reviewed Journal]

COPYRIGHT 2014 Nature Publishing Group ;ISSN: 0028-0836 ;EISSN: 1476-4687 ;DOI: 10.1038/512247a ;PMID: 25143098

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13
The microbiota of the respiratory tract: gatekeeper to respiratory health
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The microbiota of the respiratory tract: gatekeeper to respiratory health

Nature reviews. Microbiology, 2017-05, Vol.15 (5), p.259-270 [Peer Reviewed Journal]

COPYRIGHT 2017 Nature Publishing Group ;Copyright Nature Publishing Group May 2017 ;Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. 2017 ;ISSN: 1740-1526 ;EISSN: 1740-1534 ;DOI: 10.1038/nrmicro.2017.14 ;PMID: 28316330

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14
Homeostatic Immunity and the Microbiota
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Homeostatic Immunity and the Microbiota

Immunity (Cambridge, Mass.), 2017-04, Vol.46 (4), p.562-576 [Peer Reviewed Journal]

2017 ;Published by Elsevier Inc. ;Copyright Elsevier Limited Apr 18, 2017 ;ISSN: 1074-7613 ;EISSN: 1097-4180 ;DOI: 10.1016/j.immuni.2017.04.008 ;PMID: 28423337

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15
Colorectal cancer
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Article
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Colorectal cancer

Nature (London), 2015-05, Vol.521 (7551), p.S1-S1 [Peer Reviewed Journal]

COPYRIGHT 2015 Nature Publishing Group ;COPYRIGHT 2015 Nature Publishing Group ;ISSN: 0028-0836 ;EISSN: 1476-4687 ;DOI: 10.1038/521S1a ;PMID: 25970450

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16
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
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Article
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Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

eLife, 2021-05, Vol.10 [Peer Reviewed Journal]

2021, Beghini et al. ;2021, Beghini et al. This work is published under https://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2021, Beghini et al 2021 Beghini et al ;ISSN: 2050-084X ;EISSN: 2050-084X ;DOI: 10.7554/eLife.65088 ;PMID: 33944776

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17
Atopic dermatitis
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Article
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Atopic dermatitis

The Lancet (British edition), 2020-08, Vol.396 (10247), p.345-360 [Peer Reviewed Journal]

2020 Elsevier Ltd ;Copyright © 2020 Elsevier Ltd. All rights reserved. ;2020. Elsevier Ltd ;ISSN: 0140-6736 ;EISSN: 1474-547X ;DOI: 10.1016/S0140-6736(20)31286-1 ;PMID: 32738956

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18
Microbial diversity drives carbon use efficiency in a model soil
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Article
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Microbial diversity drives carbon use efficiency in a model soil

Nature communications, 2020-07, Vol.11 (1), p.3684-10, Article 3684 [Peer Reviewed Journal]

The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2020 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-020-17502-z ;PMID: 32703952

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19
Metabolic Resource Allocation in Individual Microbes Determines Ecosystem Interactions and Spatial Dynamics
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Metabolic Resource Allocation in Individual Microbes Determines Ecosystem Interactions and Spatial Dynamics

Cell reports (Cambridge), 2014-05, Vol.7 (4), p.1104-1115 [Peer Reviewed Journal]

2014 The Authors ;Copyright © 2014 The Authors. Published by Elsevier Inc. All rights reserved. ;2014 Elsevier Inc. All rights reserved. 2014 ;ISSN: 2211-1247 ;EISSN: 2211-1247 ;DOI: 10.1016/j.celrep.2014.03.070 ;PMID: 24794435

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20
Mucus barrier, mucins and gut microbiota: the expected slimy partners?
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Article
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Mucus barrier, mucins and gut microbiota: the expected slimy partners?

Gut, 2020-12, Vol.69 (12), p.2232-2243 [Peer Reviewed Journal]

Author(s) (or their employer(s)) 2020. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. ;2020 Author(s) (or their employer(s)) 2020. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/4.0/ . Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Author(s) (or their employer(s)) 2020. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. 2020 ;ISSN: 0017-5749 ;EISSN: 1468-3288 ;DOI: 10.1136/gutjnl-2020-322260 ;PMID: 32917747

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