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CoNet app: inference of biological association networks using Cytoscape
F1000 research, 2016, Vol.5, p.1519-1519
[Peer Reviewed Journal]
ISSN: 2046-1402 ;EISSN: 2046-1402 ;DOI: 10.12688/f1000research.9050.1 ;PMID: 27853510
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Title:
CoNet app: inference of biological association networks using Cytoscape
Author:
Faust, Karoline
;
Raes, Jeroen
Is Part Of:
F1000 research, 2016, Vol.5, p.1519-1519
Description:
Here we present the Cytoscape app version of our association network inference tool CoNet. Though CoNet was developed with microbial community data from sequencing experiments in mind, it is designed to be generic and can detect associations in any data set where biological entities (such as genes, metabolites or species) have been observed repeatedly. The CoNet app supports Cytoscape 2.x and 3.x and offers a variety of network inference approaches, which can also be combined. Here we briefly describe its main features and illustrate its use on microbial count data obtained by 16S rDNA sequencing of arctic soil samples. The CoNet app is available at: http://apps.cytoscape.org/apps/conet.
Publisher:
England
Language:
English
Identifier:
ISSN: 2046-1402
EISSN: 2046-1402
DOI: 10.12688/f1000research.9050.1
PMID: 27853510
Source:
Geneva Foundation Free Medical Journals at publisher websites
PubMed Central
ProQuest Central
DOAJ Directory of Open Access Journals
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