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1
A computational framework to infer human disease-associated long noncoding RNAs
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A computational framework to infer human disease-associated long noncoding RNAs

PloS one, 2014-01, Vol.9 (1), p.e84408-e84408 [Peer Reviewed Journal]

COPYRIGHT 2014 Public Library of Science ;COPYRIGHT 2014 Public Library of Science ;2014 Liu et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2014 Liu et al 2014 Liu et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0084408 ;PMID: 24392133

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2
Impact of Marker Ascertainment Bias on Genomic Selection Accuracy and Estimates of Genetic Diversity
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Impact of Marker Ascertainment Bias on Genomic Selection Accuracy and Estimates of Genetic Diversity

PloS one, 2013-09, Vol.8 (9), p.e74612-e74612 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;COPYRIGHT 2013 Public Library of Science ;2013 Heslot et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2013 Heslot et al 2013 Heslot et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0074612 ;PMID: 24040295

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3
Genome-wide analysis of long noncoding RNA (lncRNA) expression in hepatoblastoma tissues
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Genome-wide analysis of long noncoding RNA (lncRNA) expression in hepatoblastoma tissues

PloS one, 2014-01, Vol.9 (1), p.e85599-e85599 [Peer Reviewed Journal]

COPYRIGHT 2014 Public Library of Science ;COPYRIGHT 2014 Public Library of Science ;2014 Dong et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2014 Dong et al 2014 Dong et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0085599 ;PMID: 24465615

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4
Diverse Phenotypes and Specific Transcription Patterns in Twenty Mouse Lines with Ablated LincRNAs
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Diverse Phenotypes and Specific Transcription Patterns in Twenty Mouse Lines with Ablated LincRNAs

PloS one, 2015-04, Vol.10 (4), p.e0125522-e0125522 [Peer Reviewed Journal]

COPYRIGHT 2015 Public Library of Science ;COPYRIGHT 2015 Public Library of Science ;2015 Lai et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2015 Lai et al 2015 Lai et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0125522 ;PMID: 25909911

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5
Ceruloplasmin is a novel adipokine which is overexpressed in adipose tissue of obese subjects and in obesity-associated cancer cells
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Ceruloplasmin is a novel adipokine which is overexpressed in adipose tissue of obese subjects and in obesity-associated cancer cells

PloS one, 2014-03, Vol.9 (3), p.e80274-e80274 [Peer Reviewed Journal]

COPYRIGHT 2014 Public Library of Science ;COPYRIGHT 2014 Public Library of Science ;2014 Arner et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2014 Arner et al 2014 Arner et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0080274 ;PMID: 24676332

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6
Low expression of lncRNA-GAS5 is implicated in human primary varicose great saphenous veins
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Low expression of lncRNA-GAS5 is implicated in human primary varicose great saphenous veins

PloS one, 2015-03, Vol.10 (3), p.e0120550-e0120550 [Peer Reviewed Journal]

COPYRIGHT 2015 Public Library of Science ;COPYRIGHT 2015 Public Library of Science ;2015 Li et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2015 Li et al 2015 Li et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0120550 ;PMID: 25806802

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7
Silencing of long noncoding RNA AK139328 attenuates ischemia/reperfusion injury in mouse livers
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Silencing of long noncoding RNA AK139328 attenuates ischemia/reperfusion injury in mouse livers

PloS one, 2013-11, Vol.8 (11), p.e80817-e80817 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;2013 Chen et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/3.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2013 Chen et al 2013 Chen et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0080817 ;PMID: 24312245

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8
SNP discovery by illumina-based transcriptome sequencing of the olive and the genetic characterization of Turkish olive genotypes revealed by AFLP, SSR and SNP markers
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SNP discovery by illumina-based transcriptome sequencing of the olive and the genetic characterization of Turkish olive genotypes revealed by AFLP, SSR and SNP markers

PloS one, 2013-09, Vol.8 (9), p.e73674-e73674 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;COPYRIGHT 2013 Public Library of Science ;2013 Kaya et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2013 Kaya et al 2013 Kaya et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0073674 ;PMID: 24058483

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9
Transcriptome comparison between porcine subcutaneous and intramuscular stromal vascular cells during adipogenic differentiation
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Transcriptome comparison between porcine subcutaneous and intramuscular stromal vascular cells during adipogenic differentiation

PloS one, 2013-10, Vol.8 (10), p.e77094-e77094 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;COPYRIGHT 2013 Public Library of Science ;2013 Jiang et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2013 Jiang et al 2013 Jiang et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0077094 ;PMID: 24130839

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10
Integrated analysis of dysregulated lncRNA expression in fetal cardiac tissues with ventricular septal defect
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Integrated analysis of dysregulated lncRNA expression in fetal cardiac tissues with ventricular septal defect

PloS one, 2013-10, Vol.8 (10), p.e77492-e77492 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;COPYRIGHT 2013 Public Library of Science ;2013 Song et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2013 Song et al 2013 Song et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0077492 ;PMID: 24147006

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11
The impact of allergic rhinitis and asthma on human nasal and bronchial epithelial gene expression
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The impact of allergic rhinitis and asthma on human nasal and bronchial epithelial gene expression

PloS one, 2013-11, Vol.8 (11), p.e80257-e80257 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;2013 Wagener et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/3.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2013 Wagener et al 2013 Wagener et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0080257 ;PMID: 24282527

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12
Evaluation of assembly strategies using RNA-seq data associated with grain development of wheat (Triticum aestivum L.)
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Evaluation of assembly strategies using RNA-seq data associated with grain development of wheat (Triticum aestivum L.)

PloS one, 2013-12, Vol.8 (12), p.e83530-e83530 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;COPYRIGHT 2013 Public Library of Science ;2013 Li et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2013 Li et al 2013 Li et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0083530 ;PMID: 24349528

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13
Optimization of de novo short read assembly of seabuckthorn (Hippophae rhamnoides L.) transcriptome
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Optimization of de novo short read assembly of seabuckthorn (Hippophae rhamnoides L.) transcriptome

PloS one, 2013-08, Vol.8 (8), p.e72516-e72516 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;2013 Ghangal et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2013 Ghangal et al 2013 Ghangal et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0072516 ;PMID: 23991119

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14
LMethyR-SVM: Predict Human Enhancers Using Low Methylated Regions based on Weighted Support Vector Machines
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LMethyR-SVM: Predict Human Enhancers Using Low Methylated Regions based on Weighted Support Vector Machines

PloS one, 2016-09, Vol.11 (9), p.e0163491-e0163491 [Peer Reviewed Journal]

COPYRIGHT 2016 Public Library of Science ;COPYRIGHT 2016 Public Library of Science ;2016 Xu et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2016 Xu et al 2016 Xu et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0163491 ;PMID: 27662487

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15
An RNA-seq transcriptome analysis of histone modifiers and RNA silencing genes in soybean during floral initiation process
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An RNA-seq transcriptome analysis of histone modifiers and RNA silencing genes in soybean during floral initiation process

PloS one, 2013-10, Vol.8 (10), p.e77502-e77502 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;COPYRIGHT 2013 Public Library of Science ;2013 Liew et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2013 Liew et al 2013 Liew et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0077502 ;PMID: 24147010

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16
Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia
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Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia

PloS one, 2014-03, Vol.9 (3), p.e90272-e90272 [Peer Reviewed Journal]

COPYRIGHT 2014 Public Library of Science ;COPYRIGHT 2014 Public Library of Science ;2014 Torring et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2014 Torring et al 2014 Torring et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0090272 ;PMID: 24603890

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17
Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources
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Article
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Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources

PloS one, 2013-10, Vol.8 (10), p.e75265-e75265 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;COPYRIGHT 2013 Public Library of Science ;2013 Mochida et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2013 Mochida et al 2013 Mochida et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0075265 ;PMID: 24130698

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18
MicroRNA transcriptome in swine small intestine during weaning stress
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Article
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MicroRNA transcriptome in swine small intestine during weaning stress

PloS one, 2013-11, Vol.8 (11), p.e79343-e79343 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;COPYRIGHT 2013 Public Library of Science ;2013 Tao, Xu. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2013 Tao, Xu 2013 Tao, Xu ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0079343 ;PMID: 24260202

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19
Identification of an evolutionarily conserved cis-regulatory element controlling the Peg3 imprinted domain
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Identification of an evolutionarily conserved cis-regulatory element controlling the Peg3 imprinted domain

PloS one, 2013-09, Vol.8 (9), p.e75417-e75417 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;COPYRIGHT 2013 Public Library of Science ;2013 Thiaville et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2013 Thiaville et al 2013 Thiaville et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0075417 ;PMID: 24040411

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20
Folate deficiency during early-mid pregnancy affects the skeletal muscle transcriptome of piglets from a reciprocal cross
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Folate deficiency during early-mid pregnancy affects the skeletal muscle transcriptome of piglets from a reciprocal cross

PloS one, 2013-12, Vol.8 (12), p.e82616-e82616 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;COPYRIGHT 2013 Public Library of Science ;2013 Li et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/3.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2013 Li et al 2013 Li et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0082616 ;PMID: 24349320

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