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1	Material Type: Article	Machine and deep learning meet genome-scale metabolic modeling PLoS computational biology, 2019-07, Vol.15 (7), p.e1007084-e1007084 [Peer Reviewed Journal] COPYRIGHT 2019 Public Library of Science ;COPYRIGHT 2019 Public Library of Science ;2019 Zampieri et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2019 Zampieri et al 2019 Zampieri et al ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1007084 ;PMID: 31295267 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
2	Material Type: Article	GSimp: A Gibbs sampler based left-censored missing value imputation approach for metabolomics studies PLoS computational biology, 2018-01, Vol.14 (1), p.e1005973-e1005973 [Peer Reviewed Journal] COPYRIGHT 2018 Public Library of Science ;COPYRIGHT 2018 Public Library of Science ;2018 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Wei R, Wang J, Jia E, Chen T, Ni Y, Jia W (2018) GSimp: A Gibbs sampler based left-censored missing value imputation approach for metabolomics studies. PLoS Comput Biol 14(1): e1005973. https://doi.org/10.1371/journal.pcbi.1005973 ;2018 Wei et al 2018 Wei et al ;2018 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Wei R, Wang J, Jia E, Chen T, Ni Y, Jia W (2018) GSimp: A Gibbs sampler based left-censored missing value imputation approach for metabolomics studies. PLoS Comput Biol 14(1): e1005973. https://doi.org/10.1371/journal.pcbi.1005973 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005973 ;PMID: 29385130 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
3	Material Type: Article	Diversity and adaptive evolution of Saccharomyces wine yeast: a review FEMS yeast research, 2015-11, Vol.15 (7), p.fov067 [Peer Reviewed Journal] FEMS 2015. 2015 ;FEMS 2015. ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1567-1356 ;ISSN: 1567-1364 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fov067 ;PMID: 26205244 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
4	Material Type: Article	Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models PLoS computational biology, 2018-05, Vol.14 (5), p.e1006146-e1006146 [Peer Reviewed Journal] 2018 Aite et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Distributed under a Creative Commons Attribution 4.0 International License ;2018 Aite et al 2018 Aite et al ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1006146 ;PMID: 29791443 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
5	Material Type: Article	Looking beyond Saccharomyces: the potential of non-conventional yeast species for desirable traits in bioethanol fermentation FEMS yeast research, 2015-09, Vol.15 (6), p.fov053 [Peer Reviewed Journal] FEMS 2015. 2015 ;FEMS 2015. ;ISSN: 1567-1356 ;ISSN: 1567-1364 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fov053 ;PMID: 26126524 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
6	Material Type: Article	Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to lignocellulose using RNA sequencing PLoS genetics, 2012-08, Vol.8 (8), p.e1002875-e1002875 [Peer Reviewed Journal] COPYRIGHT 2012 Public Library of Science ;COPYRIGHT 2012 Public Library of Science ;Delmas et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Delmas S, Pullan ST, Gaddipati S, Kokolski M, Malla S, et al. (2012) Uncovering the Genome-Wide Transcriptional Responses of the Filamentous Fungus Aspergillus niger to Lignocellulose Using RNA Sequencing. PLoS Genetics 8(8): e1002875. doi:10.1371/journal.pgen.1002875 ;2012 Delmas et al 2012 Delmas et al ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1002875 ;PMID: 22912594 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
7	Material Type: Article	Sucrose and Saccharomyces cerevisiae: a relationship most sweet FEMS yeast research, 2016-02, Vol.16 (1), p.fov107-fov107 [Peer Reviewed Journal] FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2015 ;FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1567-1364 ;ISSN: 1567-1356 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fov107 ;PMID: 26658003 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
8	Material Type: Article	Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast PLoS computational biology, 2017-05, Vol.13 (5), p.e1005489-e1005489 [Peer Reviewed Journal] 2017 Wang et al 2017 Wang et al ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005489 ;PMID: 28520713 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
9	Material Type: Article	Curation of the genome annotation of Pichia pastoris (Komagataella phaffii) CBS7435 from gene level to protein function FEMS yeast research, 2016-09, Vol.16 (6), p.fow051 [Peer Reviewed Journal] FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2016 ;FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1567-1364 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fow051 ;PMID: 27388471 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
10	Material Type: Article	Yeast peroxisomes: structure, functions and biotechnological opportunities FEMS yeast research, 2016-06, Vol.16 (4), p.fow038 [Peer Reviewed Journal] FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2016 ;FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1567-1364 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fow038 ;PMID: 27189367 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
11	Material Type: Article	Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species PLoS computational biology, 2014-02, Vol.10 (2), p.e1003465-e1003465 [Peer Reviewed Journal] COPYRIGHT 2014 Public Library of Science ;COPYRIGHT 2014 Public Library of Science ;2014 Pitkänen et al 2014 Pitkänen et al ;2014 Pitkänen et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Pitkänen E, Jouhten P, Hou J, Syed MF, Blomberg P, et al. (2014) Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species. PLoS Comput Biol 10(2): e1003465. doi:10.1371/journal.pcbi.1003465 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1003465 ;PMID: 24516375 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
12	Material Type: Article	Functional interrogation of Plasmodium genus metabolism identifies species- and stage-specific differences in nutrient essentiality and drug targeting PLoS computational biology, 2018-01, Vol.14 (1), p.e1005895 [Peer Reviewed Journal] COPYRIGHT 2018 Public Library of Science ;COPYRIGHT 2018 Public Library of Science ;2018 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: genus metabolism identifies species- and stage-specific differences in nutrient essentiality and drug targeting. PLoS Comput Biol 14(1): e1005895. https://doi.org/10.1371/journal.pcbi.1005895 ;2018 Abdel-Haleem et al 2018 Abdel-Haleem et al ;2018 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: genus metabolism identifies species- and stage-specific differences in nutrient essentiality and drug targeting. PLoS Comput Biol 14(1): e1005895. https://doi.org/10.1371/journal.pcbi.1005895 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005895 ;PMID: 29300748 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
13	Material Type: Article	Advances in yeast systematics and phylogeny and their use as predictors of biotechnologically important metabolic pathways FEMS yeast research, 2015-09, Vol.15 (6), p.fov050 [Peer Reviewed Journal] Published by Oxford University Press on behalf of FEMS 2015. This work is written by (a) US Government employee(s) and is in the public domain in the US. 2015 ;Published by Oxford University Press on behalf of FEMS 2015. This work is written by (a) US Government employee(s) and is in the public domain in the US. ;ISSN: 1567-1356 ;ISSN: 1567-1364 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fov050 ;PMID: 26136514 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
14	Material Type: Article	Characterizing steady states of genome-scale metabolic networks in continuous cell cultures PLoS computational biology, 2017-11, Vol.13 (11), p.e1005835 [Peer Reviewed Journal] COPYRIGHT 2017 Public Library of Science ;COPYRIGHT 2017 Public Library of Science ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Fernandez-de-Cossio-Diaz J, Leon K, Mulet R (2017) Characterizing steady states of genome-scale metabolic networks in continuous cell cultures. PLoS Comput Biol 13(11): e1005835. https://doi.org/10.1371/journal.pcbi.1005835 ;2017 Fernandez-de-Cossio-Diaz et al 2017 Fernandez-de-Cossio-Diaz et al ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Fernandez-de-Cossio-Diaz J, Leon K, Mulet R (2017) Characterizing steady states of genome-scale metabolic networks in continuous cell cultures. PLoS Comput Biol 13(11): e1005835. https://doi.org/10.1371/journal.pcbi.1005835 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005835 ;PMID: 29131817 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
15	Material Type: Article	Evolutionary engineering of Saccharomyces cerevisiae for improved industrially important properties FEMS yeast research, 2012-03, Vol.12 (2), p.171-182 [Peer Reviewed Journal] 2012 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved. 2012 ;2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved ;2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved. ;2012 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved. ;ISSN: 1567-1356 ;EISSN: 1567-1364 ;DOI: 10.1111/j.1567-1364.2011.00775.x ;PMID: 22136139 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
16	Material Type: Article	Overexpression of diacylglycerol acyltransferase in Yarrowia lipolytica affects lipid body size, number and distribution FEMS yeast research, 2016-09, Vol.16 (6), p.fow062 [Peer Reviewed Journal] FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2016 ;FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1567-1364 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fow062 ;PMID: 27506614 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
17	Material Type: Article	Flux balance analysis predicts Warburg-like effects of mouse hepatocyte deficient in miR-122a PLoS computational biology, 2017-07, Vol.13 (7), p.e1005618-e1005618 [Peer Reviewed Journal] COPYRIGHT 2017 Public Library of Science ;COPYRIGHT 2017 Public Library of Science ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Wu H-Q, Cheng M-L, Lai J-M, Wu H-H, Chen M-C, Liu W-H, et al. (2017) Flux balance analysis predicts Warburg-like effects of mouse hepatocyte deficient in miR-122a. PLoS Comput Biol 13(7): e1005618. https://doi.org/10.1371/journal.pcbi.1005618 ;2017 Wu et al 2017 Wu et al ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Wu H-Q, Cheng M-L, Lai J-M, Wu H-H, Chen M-C, Liu W-H, et al. (2017) Flux balance analysis predicts Warburg-like effects of mouse hepatocyte deficient in miR-122a. PLoS Comput Biol 13(7): e1005618. https://doi.org/10.1371/journal.pcbi.1005618 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005618 ;PMID: 28686599 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
18	Material Type: Article	Clade- and species-specific features of genome evolution in the Saccharomycetaceae FEMS yeast research, 2015-08, Vol.15 (5), p.fov035-fov035 [Peer Reviewed Journal] FEMS 2015. 2015 ;FEMS 2015. ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1567-1356 ;ISSN: 1567-1364 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fov035 ;PMID: 26066552 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
19	Material Type: Article	Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction PLoS computational biology, 2018-04, Vol.14 (4), p.e1006075-e1006075 [Peer Reviewed Journal] COPYRIGHT 2018 Public Library of Science ;COPYRIGHT 2018 Public Library of Science ;2018 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Giese W, Milicic G, Schröder A, Klipp E (2018) Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction. PLoS Comput Biol 14(4): e1006075. https://doi.org/10.1371/journal.pcbi.1006075 ;2018 Giese et al 2018 Giese et al ;2018 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Giese W, Milicic G, Schröder A, Klipp E (2018) Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction. PLoS Comput Biol 14(4): e1006075. https://doi.org/10.1371/journal.pcbi.1006075 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1006075 ;PMID: 29630597 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
20	Material Type: Article	Saccharomyces cerevisiae metabolism in ecological context FEMS yeast research, 2016-11, Vol.16 (7), p.fow080 [Peer Reviewed Journal] FEMS 2016. 2016 ;FEMS 2016. ;Copyright Oxford University Press, UK Nov 2016 ;ISSN: 1567-1356 ;ISSN: 1567-1364 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fow080 ;PMID: 27634775 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by

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FEMS 2015. 2015 ;FEMS 2015. ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1567-1356 ;ISSN: 1567-1364 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fov067 ;PMID: 26205244

FEMS 2015. 2015 ;FEMS 2015. ;ISSN: 1567-1356 ;ISSN: 1567-1364 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fov053 ;PMID: 26126524

FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2015 ;FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1567-1364 ;ISSN: 1567-1356 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fov107 ;PMID: 26658003

2017 Wang et al 2017 Wang et al ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005489 ;PMID: 28520713

FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2016 ;FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1567-1364 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fow051 ;PMID: 27388471

FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2016 ;FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1567-1364 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fow038 ;PMID: 27189367

FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2016 ;FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1567-1364 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fow062 ;PMID: 27506614

FEMS 2015. 2015 ;FEMS 2015. ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1567-1356 ;ISSN: 1567-1364 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fov035 ;PMID: 26066552

FEMS 2016. 2016 ;FEMS 2016. ;Copyright Oxford University Press, UK Nov 2016 ;ISSN: 1567-1356 ;ISSN: 1567-1364 ;EISSN: 1567-1364 ;DOI: 10.1093/femsyr/fow080 ;PMID: 27634775

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