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1
Using word embeddings to improve the privacy of clinical notes
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Article
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Using word embeddings to improve the privacy of clinical notes

Journal of the American Medical Informatics Association : JAMIA, 2020-06, Vol.27 (6), p.901-907 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press on behalf of the American Medical Informatics Association. 2020 ;The Author(s) 2020. Published by Oxford University Press on behalf of the American Medical Informatics Association. ;ISSN: 1527-974X ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocaa038 ;PMID: 32388549

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2
SaRAD: a Simple and Robust Abbreviation Dictionary
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SaRAD: a Simple and Robust Abbreviation Dictionary

Bioinformatics, 2004-03, Vol.20 (4), p.527-533 [Peer Reviewed Journal]

2004 INIST-CNRS ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btg439 ;PMID: 14990448 ;CODEN: BOINFP

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3
Automatically classifying sentences in full-text biomedical articles into Introduction, Methods, Results and Discussion
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Article
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Automatically classifying sentences in full-text biomedical articles into Introduction, Methods, Results and Discussion

Bioinformatics, 2009-12, Vol.25 (23), p.3174-3180 [Peer Reviewed Journal]

The Author 2009. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org 2009 ;2015 INIST-CNRS ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btp548 ;PMID: 19783830

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4
SNOW: Standard NOmenclature Wizard to help searching for (bio) chemical standardized names
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SNOW: Standard NOmenclature Wizard to help searching for (bio) chemical standardized names

Bioinformatics, 2003-12, Vol.19 (18), p.2492-2493 [Peer Reviewed Journal]

2004 INIST-CNRS ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btg355 ;PMID: 14668242 ;CODEN: BOINFP

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5
Mining biomedical images towards valuable information retrieval in biomedical and life sciences
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Mining biomedical images towards valuable information retrieval in biomedical and life sciences

Database : the journal of biological databases and curation, 2016, Vol.2016, p.baw118 [Peer Reviewed Journal]

The Author(s) 2016. Published by Oxford University Press. ;The Author(s) 2016. Published by Oxford University Press. 2016 ;ISSN: 1758-0463 ;EISSN: 1758-0463 ;DOI: 10.1093/database/baw118 ;PMID: 27538578

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6
COBrA: a bio-ontology editor
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Article
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COBrA: a bio-ontology editor

Bioinformatics, 2005-03, Vol.21 (6), p.825-826 [Peer Reviewed Journal]

2005 INIST-CNRS ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bti097 ;PMID: 15513995 ;CODEN: BOINFP

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7
Informative RNA base embedding for RNA structural alignment and clustering by deep representation learning
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Informative RNA base embedding for RNA structural alignment and clustering by deep representation learning

NAR genomics and bioinformatics, 2022-03, Vol.4 (1), p.lqac012-lqac012 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press on behalf of NAR Genomics and Bioinformatics. 2022 ;The Author(s) 2022. Published by Oxford University Press on behalf of NAR Genomics and Bioinformatics. ;ISSN: 2631-9268 ;EISSN: 2631-9268 ;DOI: 10.1093/nargab/lqac012 ;PMID: 35211670

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8
Automatic extraction of cancer registry reportable information from free-text pathology reports using multitask convolutional neural networks
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Article
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Automatic extraction of cancer registry reportable information from free-text pathology reports using multitask convolutional neural networks

Journal of the American Medical Informatics Association : JAMIA, 2020-01, Vol.27 (1), p.89-98 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. ;ISSN: 1527-974X ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocz153 ;PMID: 31710668

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9
Evaluation of an artificial intelligence clinical trial matching system in Australian lung cancer patients
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Evaluation of an artificial intelligence clinical trial matching system in Australian lung cancer patients

JAMIA open, 2020-07, Vol.3 (2), p.209-215 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press on behalf of the American Medical Informatics Association. ;COPYRIGHT 2020 Oxford University Press ;The Author(s) 2020. Published by Oxford University Press on behalf of the American Medical Informatics Association. 2020 ;ISSN: 2574-2531 ;EISSN: 2574-2531 ;DOI: 10.1093/jamiaopen/ooaa002 ;PMID: 32734161

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10
Validating a novel natural language processing pathway for automated quality assurance in surgical oncology: incomplete excision rates of 34 955 basal cell carcinomas
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Validating a novel natural language processing pathway for automated quality assurance in surgical oncology: incomplete excision rates of 34 955 basal cell carcinomas

British journal of surgery, 2023-08, Vol.110 (9), p.1072-1075 [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press on behalf of BJS Society Ltd. 2023 ;ISSN: 0007-1323 ;EISSN: 1365-2168 ;DOI: 10.1093/bjs/znad055 ;PMID: 36935397

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11
PySeqLab: an open source Python package for sequence labeling and segmentation
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Article
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PySeqLab: an open source Python package for sequence labeling and segmentation

Bioinformatics (Oxford, England), 2017-11, Vol.33 (21), p.3497-3499 [Peer Reviewed Journal]

The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com ;The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2017 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btx451 ;PMID: 29036277

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12
Natural language processing-driven state machines to extract social factors from unstructured clinical documentation
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Natural language processing-driven state machines to extract social factors from unstructured clinical documentation

JAMIA open, 2023-07, Vol.6 (2), p.ooad024-ooad024 [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press on behalf of the American Medical Informatics Association. 2023 ;The Author(s) 2023. Published by Oxford University Press on behalf of the American Medical Informatics Association. ;COPYRIGHT 2023 Oxford University Press ;ISSN: 2574-2531 ;EISSN: 2574-2531 ;DOI: 10.1093/jamiaopen/ooad024 ;PMID: 37081945

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13
Current progress in bioinformatics 2007
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Article
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Current progress in bioinformatics 2007

Briefings in bioinformatics, 2007-09, Vol.8 (5), p.277-278 [Peer Reviewed Journal]

The Author 2007. Published by Oxford University Press. For Permissions, please email: journals.permissions@oxfordjournals.org 2007 ;2008 INIST-CNRS ;ISSN: 1467-5463 ;EISSN: 1477-4054 ;DOI: 10.1093/bib/bbm041 ;PMID: 17724063

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14
iCOMIC: a graphical interface-driven bioinformatics pipeline for analyzing cancer omics data
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Article
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iCOMIC: a graphical interface-driven bioinformatics pipeline for analyzing cancer omics data

NAR genomics and bioinformatics, 2022-09, Vol.4 (3), p.lqac053-lqac053 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press on behalf of NAR Genomics and Bioinformatics. 2022 ;ISSN: 2631-9268 ;EISSN: 2631-9268 ;DOI: 10.1093/nargab/lqac053 ;PMID: 35899080

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15
ONTO-PERL: An API for supporting the development and analysis of bio-ontologies
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Article
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ONTO-PERL: An API for supporting the development and analysis of bio-ontologies

Bioinformatics, 2008-03, Vol.24 (6), p.885-887 [Peer Reviewed Journal]

2008 The Author(s) 2008 ;2008 INIST-CNRS ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btn042 ;PMID: 18245124 ;CODEN: BOINFP

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16
Elucidating the functional roles of prokaryotic proteins using big data and artificial intelligence
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Article
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Elucidating the functional roles of prokaryotic proteins using big data and artificial intelligence

FEMS microbiology reviews, 2023-01, Vol.47 (1), p.1 [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press on behalf of FEMS. 2023 ;The Author(s) 2023. Published by Oxford University Press on behalf of FEMS. ;COPYRIGHT 2023 Oxford University Press ;ISSN: 1574-6976 ;ISSN: 0168-6445 ;EISSN: 1574-6976 ;DOI: 10.1093/femsre/fuad003 ;PMID: 36725215

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17
BioCreative-IV virtual issue
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Article
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BioCreative-IV virtual issue

Database : the journal of biological databases and curation, 2014, Vol.2014, p.bau039-bau039 [Peer Reviewed Journal]

The Author(s) 2014. Published by Oxford University Press. 2014 ;ISSN: 1758-0463 ;EISSN: 1758-0463 ;DOI: 10.1093/database/bau039 ;PMID: 24852177

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18
Identification of OBO nonalignments and its implications for OBO enrichment
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Article
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Identification of OBO nonalignments and its implications for OBO enrichment

Bioinformatics, 2008-06, Vol.24 (12), p.1448-1455 [Peer Reviewed Journal]

2008 The Author(s) 2008 ;2008 INIST-CNRS ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btn194 ;PMID: 18463117 ;CODEN: BOINFP

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19
Heave reduction of payload through crane control based on deep reinforcement learning using dual offshore cranes
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Heave reduction of payload through crane control based on deep reinforcement learning using dual offshore cranes

Journal of computational design and engineering, 2023-02, Vol.10 (1), p.414-424 [Peer Reviewed Journal]

ISSN: 2288-5048 ;EISSN: 2288-5048 ;DOI: 10.1093/jcde/qwac122

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20
Consumer perceptions of telehealth for mental health or substance abuse: a Twitter-based topic modeling analysis
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Article
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Consumer perceptions of telehealth for mental health or substance abuse: a Twitter-based topic modeling analysis

JAMIA open, 2022-07, Vol.5 (2), p.ooac028-ooac028 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. ;COPYRIGHT 2022 Oxford University Press ;The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. 2022 ;ISSN: 2574-2531 ;EISSN: 2574-2531 ;DOI: 10.1093/jamiaopen/ooac028 ;PMID: 35495736

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