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1
Productive visualization of high-throughput sequencing data using the SeqCode open portable platform
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Productive visualization of high-throughput sequencing data using the SeqCode open portable platform

Enrique Blanco, Mar González-Ramírez, Luciano di Croce 2021. This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made https://creativecommons.org/licenses/by/4.0/ info:eu-repo/semantics/openAccess ;ISSN: 2045-2322 ;EISSN: 2045-2322 ;DOI: 10.1038/s41598-021-98889-7

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2
pyFoldX: enabling biomolecular analysis and engineering along structural ensembles
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pyFoldX: enabling biomolecular analysis and engineering along structural ensembles

Leandro G. Radusky, Luis Serrano 2022. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial Licens (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited https://creativecommons.org/licenses/by-nc/4.0/ info:eu-repo/semantics/openAccess ;ISSN: 1367-4811 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btac072

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3
Beacon v2 and Beacon networks: A "lingua franca" for federated data discovery in biomedical genomics, and beyond
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Beacon v2 and Beacon networks: A "lingua franca" for federated data discovery in biomedical genomics, and beyond

2022 Jordi Rambla et al. Human Mutation published by Wiley Periodicals LLC. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made https://creativecommons.org/licenses/by-nc-nd/4.0/ info:eu-repo/semantics/openAccess ;ISSN: 1059-7794 ;EISSN: 1098-1004 ;DOI: 10.1002/humu.24369

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4
MultiDataSet: an R package for encapsulating multiple data sets with application to omic data integration
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MultiDataSet: an R package for encapsulating multiple data sets with application to omic data integration

Carles Hernandez-Ferrer, Carlos Ruiz-Arenas, Alba Beltran-Gomila, Juan R. González. This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/) http://creativecommons.org/licenses/by/4.0/ info:eu-repo/semantics/openAccess ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-016-1455-1

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5
MultiDataSet: an R package for encapsulating multiple data sets with application to omic data integration
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MultiDataSet: an R package for encapsulating multiple data sets with application to omic data integration

BMC bioinformatics, 2017 [Peer Reviewed Journal]

info:eu-repo/semantics/openAccess © Carles Hernandez-Ferrer, Carlos Ruiz-Arenas, Alba Beltran-Gomila, Juan R. González. This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/) http://creativecommons.org/licenses/by/4.0/ ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-016-1455-1

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6
Lisen&Curate: a platform to facilitate gathering textual evidence for curation of regulation of transcription initiation in bacteria
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Lisen&Curate: a platform to facilitate gathering textual evidence for curation of regulation of transcription initiation in bacteria

2021 Martín Díaz-Rodríguez et al. Published by Elsevier B.V. This is an open access article under the CC BY-NC-ND license http://creativecommons.org/licenses/by-nc-nd/4.0/ http://creativecommons.org/licenses/by-nc-nd/4.0/ info:eu-repo/semantics/openAccess ;ISSN: 1874-9399 ;EISSN: 1876-4320 ;DOI: 10.1016/j.bbagrm.2021.194753

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7
Computational methods for RNA modification detection from nanopore direct RNA sequencing data
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Computational methods for RNA modification detection from nanopore direct RNA sequencing data

2021 Mattia Furlan et al. Published by Informa UK Limited, trading as Taylor & Francis Group. This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives License (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited, and is not altered, transformed, or built upon in any way http://creativecommons.org/licenses/by-nc-nd/4.0/ info:eu-repo/semantics/openAccess ;ISSN: 1547-6286 ;EISSN: 1555-8584 ;DOI: 10.1080/15476286.2021.1978215

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8
CTDquerier: a bioconductor R package for Comparative Toxicogenomics DatabaseTM data extraction, visualization and enrichment of environmental and toxicological studies
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CTDquerier: a bioconductor R package for Comparative Toxicogenomics DatabaseTM data extraction, visualization and enrichment of environmental and toxicological studies

Carles Hernandez-Ferrer, Juan R Gonzalez 2018. Published by Oxford University Press. This is an Open Access article distributed under the terms of a Creative Commons Attribution License http://creativecommons.org/licenses/by-nc/4.0/ info:eu-repo/semantics/openAccess ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty326

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9
CTDquerier: a bioconductor R package for Comparative Toxicogenomics DatabaseTM data extraction, visualization and enrichment of environmental and toxicological studies
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CTDquerier: a bioconductor R package for Comparative Toxicogenomics DatabaseTM data extraction, visualization and enrichment of environmental and toxicological studies

Bioinformatics, 2018-09, Vol.34 (18), p.3235-3237 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. 2018 ;Carles Hernandez-Ferrer, Juan R Gonzalez 2018. Published by Oxford University Press. This is an Open Access article distributed under the terms of a Creative Commons Attribution License info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc/4.0/ ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty326 ;PMID: 29688259

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10
Still using MS Excel? Implementation of the WHO Go.Data software for the COVID‐19 contact tracing
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Still using MS Excel? Implementation of the WHO Go.Data software for the COVID‐19 contact tracing

cc-by (c) Llupià, Anna et al., 2020 http://creativecommons.org/licenses/by/3.0/es info:eu-repo/semantics/openAccess ;ISSN: 2398-8835 ;EISSN: 2398-8835 ;DOI: 10.1002/hsr2.164

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11
The crowd in requirements engineering: the landscape and challenges
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The crowd in requirements engineering: the landscape and challenges

info:eu-repo/semantics/openAccess ;ISSN: 0740-7459 ;EISSN: 1937-4194 ;DOI: 10.1109/MS.2017.33

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12
Continuously Assessing and Improving Software Quality With Software Analytics Tools: A Case Study
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Continuously Assessing and Improving Software Quality With Software Analytics Tools: A Case Study

IEEE access, 2019-01, Vol.7, p.68219-68239 [Peer Reviewed Journal]

Copyright The Institute of Electrical and Electronics Engineers, Inc. (IEEE) 2019 ;Attribution 3.0 Spain info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by/3.0/es/ ;ISSN: 2169-3536 ;EISSN: 2169-3536 ;DOI: 10.1109/ACCESS.2019.2917403 ;CODEN: IAECCG

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13
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
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DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

Bioinformatics, 2009-06, Vol.25 (11), p.1451-1452 [Peer Reviewed Journal]

The Author 2009. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org 2009 ;2009 INIST-CNRS ;(c) Librado Sanz, Pablo et al., 2009 info:eu-repo/semantics/openAccess ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btp187 ;PMID: 19346325 ;CODEN: BOINFP

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14
rDock: a fast, versatile and open source program for docking ligands to proteins and nucleic acids
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rDock: a fast, versatile and open source program for docking ligands to proteins and nucleic acids

PLoS computational biology, 2014-04, Vol.10 (4), p.e1003571-e1003571 [Peer Reviewed Journal]

COPYRIGHT 2014 Public Library of Science ;COPYRIGHT 2014 Public Library of Science ;cc-by (c) Ruiz-Carmona, Sergio et al., 2014 info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by/3.0/es ;2014 Ruiz-Carmona et al 2014 Ruiz-Carmona et al ;2014 Ruiz-Carmona et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Ruiz-Carmona S, Alvarez-Garcia D, Foloppe N, Garmendia-Doval AB, Juhos S, et al. (2014) rDock: A Fast, Versatile and Open Source Program for Docking Ligands to Proteins and Nucleic Acids. PLoS Comput Biol 10(4): e1003571. doi:10.1371/journal.pcbi.1003571 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1003571 ;PMID: 24722481

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15
Alpsnmr: an r package for signal processing of fully untargeted nmr-based metabolomics
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Alpsnmr: an r package for signal processing of fully untargeted nmr-based metabolomics

(c) Madrid Gambín, Francisco Javier et al., 2020 info:eu-repo/semantics/openAccess ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa022

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16
Software modernization revisited: Challenges and prospects
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Software modernization revisited: Challenges and prospects

Computer (Long Beach, Calif.), 2015-08, Vol.48 (8), p.76-80 [Peer Reviewed Journal]

CC BY-NC-ND info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-nd/3.0/es/ ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 0018-9162 ;EISSN: 1558-0814 ;DOI: 10.1109/MC.2015.234

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17
Interoperable and scalable data analysis with microservices: applications in metabolomics
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Interoperable and scalable data analysis with microservices: applications in metabolomics

cc-by (c) Emami Khoonsari, Payam et al., 2019 http://creativecommons.org/licenses/by/3.0/es/ info:eu-repo/semantics/openAccess ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz160

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18
Sphericity and roundness computation for particles using the extreme vertices model
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Sphericity and roundness computation for particles using the extreme vertices model

Attribution-NonCommercial-NoDerivs 3.0 Spain info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-nd/3.0/es/ ;ISSN: 1877-7503 ;EISSN: 1877-7511 ;DOI: 10.1016/j.jocs.2018.11.005

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19
Open source software ecosystems : a systematic mapping
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Open source software ecosystems : a systematic mapping

info:eu-repo/semantics/openAccess ;ISSN: 0950-5849 ;EISSN: 1873-6025 ;DOI: 10.1016/j.infsof.2017.07.007

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20
eTOXlab, an open source modeling framework for implementing predictive models in production environments
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eTOXlab, an open source modeling framework for implementing predictive models in production environments

2015 Carrió et al.; licensee Springer. /nThis is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. https://creativecommons.org/licenses/by/4.0/ info:eu-repo/semantics/openAccess ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-015-0058-6

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