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1
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
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CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database

Nucleic acids research, 2020-01, Vol.48 (D1), p.D517-D525 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz935 ;PMID: 31665441

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2
More than 18,000 effectors in the Legionella genus genome provide multiple, independent combinations for replication in human cells
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More than 18,000 effectors in the Legionella genus genome provide multiple, independent combinations for replication in human cells

Proceedings of the National Academy of Sciences - PNAS, 2019-02, Vol.116 (6), p.2265-2273 [Peer Reviewed Journal]

Copyright National Academy of Sciences Feb 5, 2019 ;Distributed under a Creative Commons Attribution 4.0 International License ;2019 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1808016116 ;PMID: 30659146

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3
NCBI prokaryotic genome annotation pipeline
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NCBI prokaryotic genome annotation pipeline

Nucleic acids research, 2016-08, Vol.44 (14), p.6614-6624 [Peer Reviewed Journal]

Published by Oxford University Press on behalf of Nucleic Acids Research 2016. This work is written by (a) US Government employee(s) and is in the public domain in the US. ;Published by Oxford University Press on behalf of Nucleic Acids Research 2016. This work is written by (a) US Government employee(s) and is in the public domain in the US. 2016 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkw569 ;PMID: 27342282

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4
Structural insights into the signalling mechanisms of two-component systems
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Structural insights into the signalling mechanisms of two-component systems

Nature reviews. Microbiology, 2018-10, Vol.16 (10), p.585-593 [Peer Reviewed Journal]

COPYRIGHT 2018 Nature Publishing Group ;Copyright Nature Publishing Group Oct 2018 ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1740-1526 ;EISSN: 1740-1534 ;DOI: 10.1038/s41579-018-0055-7 ;PMID: 30008469

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5
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
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eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

Nucleic acids research, 2016-01, Vol.44 (D1), p.D286-D293 [Peer Reviewed Journal]

The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. 2016 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkv1248 ;PMID: 26582926

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6
Parabacteroides distasonis Alleviates Obesity and Metabolic Dysfunctions via Production of Succinate and Secondary Bile Acids
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Parabacteroides distasonis Alleviates Obesity and Metabolic Dysfunctions via Production of Succinate and Secondary Bile Acids

Cell reports (Cambridge), 2019-01, Vol.26 (1), p.222-235.e5 [Peer Reviewed Journal]

2018 The Author(s) ;Copyright © 2018 The Author(s). Published by Elsevier Inc. All rights reserved. ;ISSN: 2211-1247 ;EISSN: 2211-1247 ;DOI: 10.1016/j.celrep.2018.12.028 ;PMID: 30605678

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7
Characterization and engineering of a plastic-degrading aromatic polyesterase
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Characterization and engineering of a plastic-degrading aromatic polyesterase

Proceedings of the National Academy of Sciences - PNAS, 2018-05, Vol.115 (19), p.E4350-E4357 [Peer Reviewed Journal]

Volumes 1–89 and 106–114, copyright as a collective work only; author(s) retains copyright to individual articles ;Copyright © 2018 the Author(s). Published by PNAS. ;Copyright National Academy of Sciences May 8, 2018 ;Copyright © 2018 the Author(s). Published by PNAS. 2018 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1718804115 ;PMID: 29666242

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8
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
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The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D206-D214 [Peer Reviewed Journal]

The Author(s) 2013. Published by Oxford University Press. 2013 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkt1226 ;PMID: 24293654

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9
Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database
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Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database

Nucleic acids research, 2016-01, Vol.44 (D1), p.D646-D653 [Peer Reviewed Journal]

The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. 2016 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkv1227 ;PMID: 26578582

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10
DIALS: implementation and evaluation of a new integration package
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DIALS: implementation and evaluation of a new integration package

Acta crystallographica. Section D, Biological crystallography., 2018-02, Vol.74 (2), p.85-97 [Peer Reviewed Journal]

Winter et al. 2018 ;Copyright Wiley Subscription Services, Inc. Feb 2018 ;Winter et al. 2018 2018 ;ISSN: 2059-7983 ;ISSN: 0907-4449 ;EISSN: 2059-7983 ;EISSN: 1399-0047 ;DOI: 10.1107/S2059798317017235 ;PMID: 29533234

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11
Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA
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Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA

Cell, 2016-05, Vol.165 (4), p.949-962 [Peer Reviewed Journal]

2016 Elsevier Inc. ;Copyright © 2016 Elsevier Inc. All rights reserved. ;ISSN: 0092-8674 ;EISSN: 1097-4172 ;DOI: 10.1016/j.cell.2016.04.003 ;PMID: 27114038

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12
Dali server: conservation mapping in 3D
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Article
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Dali server: conservation mapping in 3D

Nucleic acids research, 2010-07, Vol.38 (Web Server issue), p.W545-W549 [Peer Reviewed Journal]

The Author(s) 2010. Published by Oxford University Press. 2010 ;ISSN: 0305-1048 ;ISSN: 1362-4962 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkq366 ;PMID: 20457744

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13
Discovery of microbial natural products by activation of silent biosynthetic gene clusters
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Discovery of microbial natural products by activation of silent biosynthetic gene clusters

Nature reviews. Microbiology, 2015-08, Vol.13 (8), p.509-523 [Peer Reviewed Journal]

COPYRIGHT 2015 Nature Publishing Group ;Copyright Nature Publishing Group Aug 2015 ;ISSN: 1740-1526 ;EISSN: 1740-1534 ;DOI: 10.1038/nrmicro3496 ;PMID: 26119570

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14
Ultra-large library docking for discovering new chemotypes
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Ultra-large library docking for discovering new chemotypes

Nature (London), 2019-02, Vol.566 (7743), p.224-229 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;Copyright Nature Publishing Group Feb 14, 2019 ;ISSN: 0028-0836 ;EISSN: 1476-4687 ;DOI: 10.1038/s41586-019-0917-9 ;PMID: 30728502

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15
Molecular mechanism of Fe 3+ binding inhibition to Vibrio metschnikovii ferric ion-binding protein, FbpA, by rosmarinic acid and its hydrolysate, danshensu
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Article
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Molecular mechanism of Fe 3+ binding inhibition to Vibrio metschnikovii ferric ion-binding protein, FbpA, by rosmarinic acid and its hydrolysate, danshensu

Protein science, 2024-02, Vol.33 (2), p.e4881 [Peer Reviewed Journal]

2023 The Authors. Protein Science published by Wiley Periodicals LLC on behalf of The Protein Society. ;ISSN: 0961-8368 ;EISSN: 1469-896X ;DOI: 10.1002/pro.4881 ;PMID: 38143427

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16
Structure and mechanism of the essential two-component signal-transduction system WalKR in Staphylococcus aureus
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Structure and mechanism of the essential two-component signal-transduction system WalKR in Staphylococcus aureus

Nature communications, 2016-03, Vol.7 (1), p.11000-11000, Article 11000 [Peer Reviewed Journal]

Copyright Nature Publishing Group Mar 2016 ;Copyright © 2016, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. 2016 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/ncomms11000 ;PMID: 26987594

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17
Structural insight into catalytic mechanism of PET hydrolase
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Article
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Structural insight into catalytic mechanism of PET hydrolase

Nature communications, 2017-12, Vol.8 (1), p.2106-6, Article 2106 [Peer Reviewed Journal]

2017. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2017 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-017-02255-z ;PMID: 29235460

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18
Adhesion, invasion and evasion: the many functions of the surface proteins of Staphylococcus aureus
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Adhesion, invasion and evasion: the many functions of the surface proteins of Staphylococcus aureus

Nature reviews. Microbiology, 2014-01, Vol.12 (1), p.49-62 [Peer Reviewed Journal]

COPYRIGHT 2014 Nature Publishing Group ;Copyright Nature Publishing Group Jan 2014 ;ISSN: 1740-1526 ;EISSN: 1740-1534 ;DOI: 10.1038/nrmicro3161 ;PMID: 24336184

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19
Structure of photosystem II and substrate binding at room temperature
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Article
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Structure of photosystem II and substrate binding at room temperature

Nature (London), 2016-12, Vol.540 (7633), p.453-457 [Peer Reviewed Journal]

COPYRIGHT 2016 Nature Publishing Group ;COPYRIGHT 2016 Nature Publishing Group ;ISSN: 0028-0836 ;ISSN: 1476-4687 ;EISSN: 1476-4687 ;DOI: 10.1038/nature20161 ;PMID: 27871088

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20
Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases
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Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases

Bioinformatics, 2014-05, Vol.30 (10), p.1473-1475 [Peer Reviewed Journal]

The Author 2014. Published by Oxford University Press. 2014 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btu048 ;PMID: 24463181

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