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1
Consensus statement: Virus taxonomy in the age of metagenomics
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Consensus statement: Virus taxonomy in the age of metagenomics

Nature reviews. Microbiology, 2017-03, Vol.15 (3), p.161-168 [Peer Reviewed Journal]

Copyright Nature Publishing Group Mar 2017 ;Attribution ;Wageningen University & Research ;ISSN: 1740-1526 ;EISSN: 1740-1534 ;DOI: 10.1038/nrmicro.2016.177 ;PMID: 28134265

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2
Complete Nucleotide Sequence of an IncI2 Plasmid Coharboring blaCTX-M-55 and mcr-1
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Complete Nucleotide Sequence of an IncI2 Plasmid Coharboring blaCTX-M-55 and mcr-1

Antimicrobial agents and chemotherapy, 2016-08, Vol.60 (8), p.5014-5017 [Peer Reviewed Journal]

Copyright © 2016, American Society for Microbiology. All Rights Reserved. ;Copyright © 2016, American Society for Microbiology. All Rights Reserved. 2016 American Society for Microbiology ;ISSN: 0066-4804 ;EISSN: 1098-6596 ;DOI: 10.1128/AAC.00774-16 ;PMID: 27216063

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3
Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis
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Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis

Nature communications, 2017-07, Vol.8 (1), p.59-59, Article 59 [Peer Reviewed Journal]

The Author(s) 2017 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-017-00050-4 ;PMID: 28680106

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4
tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes
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tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

Nucleic acids research, 2016-07, Vol.44 (W1), p.W54-W57 [Peer Reviewed Journal]

The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. 2016 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkw413 ;PMID: 27174935

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5
YTHDF3 facilitates translation and decay of N 6 -methyladenosine-modified RNA
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YTHDF3 facilitates translation and decay of N 6 -methyladenosine-modified RNA

Cell research, 2017-03, Vol.27 (3), p.315 [Peer Reviewed Journal]

EISSN: 1748-7838 ;DOI: 10.1038/cr.2017.15 ;PMID: 28106072

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6
Fast, sensitive and accurate integration of single-cell data with Harmony
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Fast, sensitive and accurate integration of single-cell data with Harmony

Nature methods, 2019-12, Vol.16 (12), p.1289-1296 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;The Author(s), under exclusive licence to Springer Nature America, Inc. 2019. ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-019-0619-0 ;PMID: 31740819

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7
AdapterRemoval v2: rapid adapter trimming, identification, and read merging
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Article
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AdapterRemoval v2: rapid adapter trimming, identification, and read merging

BMC research notes, 2016-02, Vol.9 (1), p.88-88, Article 88 [Peer Reviewed Journal]

Copyright BioMed Central 2016 ;Schubert et al. 2016 ;ISSN: 1756-0500 ;EISSN: 1756-0500 ;DOI: 10.1186/s13104-016-1900-2 ;PMID: 26868221

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8
GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy
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GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy

Nucleic acids research, 2022-01, Vol.50 (D1), p.D785-D794 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2022 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab776 ;PMID: 34520557

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9
Phase separation of DNA: From past to present
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Phase separation of DNA: From past to present

Biophysical journal, 2021-04, Vol.120 (7), p.1139-1149 [Peer Reviewed Journal]

2021 Biophysical Society ;Copyright © 2021 Biophysical Society. Published by Elsevier Inc. All rights reserved. ;2021 Biophysical Society. 2021 Biophysical Society ;ISSN: 0006-3495 ;EISSN: 1542-0086 ;DOI: 10.1016/j.bpj.2021.01.033 ;PMID: 33582138

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10
High speed BLASTN: an accelerated MegaBLAST search tool
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High speed BLASTN: an accelerated MegaBLAST search tool

Nucleic acids research, 2015-09, Vol.43 (16), p.7762-7768 [Peer Reviewed Journal]

The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. 2015 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkv784 ;PMID: 26250111

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11
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads
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The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads

Nucleic acids research, 2019-05, Vol.47 (8), p.e47-e47 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz114 ;PMID: 30783653

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12
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
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Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

Nature biotechnology, 2019-10, Vol.37 (10), p.1155-1162 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;COPYRIGHT 2019 Nature Publishing Group ;Copyright Nature Publishing Group Oct 2019 ;ISSN: 1087-0156 ;EISSN: 1546-1696 ;DOI: 10.1038/s41587-019-0217-9 ;PMID: 31406327

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13
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin
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Article
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Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin

Microbiome, 2018-05, Vol.6 (1), p.90-90, Article 90 [Peer Reviewed Journal]

COPYRIGHT 2018 BioMed Central Ltd. ;The Author(s). 2018 ;ISSN: 2049-2618 ;EISSN: 2049-2618 ;DOI: 10.1186/s40168-018-0470-z ;PMID: 29773078

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14
MutationTaster2: mutation prediction for the deep-sequencing age
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MutationTaster2: mutation prediction for the deep-sequencing age

Nature methods, 2014-04, Vol.11 (4), p.361-362 [Peer Reviewed Journal]

COPYRIGHT 2014 Nature Publishing Group ;Copyright Nature Publishing Group Apr 2014 ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/nmeth.2890 ;PMID: 24681721

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15
Pan-Genome of Wild and Cultivated Soybeans
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Pan-Genome of Wild and Cultivated Soybeans

Cell, 2020-07, Vol.182 (1), p.162-176.e13 [Peer Reviewed Journal]

2020 Elsevier Inc. ;Copyright © 2020 Elsevier Inc. All rights reserved. ;ISSN: 0092-8674 ;EISSN: 1097-4172 ;DOI: 10.1016/j.cell.2020.05.023 ;PMID: 32553274

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16
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
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Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

Nature biotechnology, 2019-08, Vol.37 (8), p.907-915 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;COPYRIGHT 2019 Nature Publishing Group ;Copyright Nature Publishing Group Aug 2019 ;ISSN: 1087-0156 ;EISSN: 1546-1696 ;DOI: 10.1038/s41587-019-0201-4 ;PMID: 31375807

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17
Deep learning: new computational modelling techniques for genomics
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Article
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Deep learning: new computational modelling techniques for genomics

Nature reviews. Genetics, 2019-07, Vol.20 (7), p.389-403 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;COPYRIGHT 2019 Nature Publishing Group ;Springer Nature Limited 2019. ;ISSN: 1471-0056 ;EISSN: 1471-0064 ;DOI: 10.1038/s41576-019-0122-6 ;PMID: 30971806

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18
The Earth BioGenome Project 2020: Starting the clock
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The Earth BioGenome Project 2020: Starting the clock

Proceedings of the National Academy of Sciences - PNAS, 2022-01, Vol.119 (4), p.1 [Peer Reviewed Journal]

Copyright National Academy of Sciences Jan 25, 2022 ;Copyright © 2022 the Author(s). Published by PNAS. 2022 ;ISSN: 0027-8424 ;ISSN: 1091-6490 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.2115635118 ;PMID: 35042800

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19
Performance of neural network basecalling tools for Oxford Nanopore sequencing
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Performance of neural network basecalling tools for Oxford Nanopore sequencing

Genome Biology, 2019-06, Vol.20 (1), p.129-129, Article 129 [Peer Reviewed Journal]

2019. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-019-1727-y ;PMID: 31234903

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20
Principles of Long Noncoding RNA Evolution Derived from Direct Comparison of Transcriptomes in 17 Species
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Principles of Long Noncoding RNA Evolution Derived from Direct Comparison of Transcriptomes in 17 Species

Cell reports (Cambridge), 2015-05, Vol.11 (7), p.1110-1122 [Peer Reviewed Journal]

2015 The Authors ;Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved. ;ISSN: 2211-1247 ;EISSN: 2211-1247 ;DOI: 10.1016/j.celrep.2015.04.023 ;PMID: 25959816

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