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| Result Number | Material Type | Add to My Shelf Action | Record Details and Options |
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| 1 |
Material Type: Article
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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inferenceBioinformatics, 2019-11, Vol.35 (21), p.4453-4455 [Peer Reviewed Journal]The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz305 ;PMID: 31070718Full text available |
| 2 |
Material Type: Article
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fastp: an ultra-fast all-in-one FASTQ preprocessorBioinformatics, 2018-09, Vol.34 (17), p.i884-i890 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty560 ;PMID: 30423086Full text available |
| 3 |
Material Type: Article
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Minimap2: pairwise alignment for nucleotide sequencesBioinformatics, 2018-09, Vol.34 (18), p.3094-3100 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty191 ;PMID: 29750242Full text available |
| 4 |
Material Type: Article
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Nextstrain: real-time tracking of pathogen evolutionBioinformatics, 2018-12, Vol.34 (23), p.4121-4123 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty407 ;PMID: 29790939Full text available |
| 5 |
Material Type: Article
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KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score thresholdBioinformatics, 2020-04, Vol.36 (7), p.2251-2252 [Peer Reviewed Journal]The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz859 ;PMID: 31742321Full text available |
| 6 |
Material Type: Article
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VarSome: the human genomic variant search engineBioinformatics (Oxford, England), 2019-06, Vol.35 (11), p.1978-1980 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press. ;The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty897 ;PMID: 30376034Full text available |
| 7 |
Material Type: Article
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clinker & clustermap.js: automatic generation of gene cluster comparison figuresBioinformatics (Oxford, England), 2021-08, Vol.37 (16), p.2473-2475 [Peer Reviewed Journal]The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2021 ;The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab007 ;PMID: 33459763Full text available |
| 8 |
Material Type: Article
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NanoPack: visualizing and processing long-read sequencing dataBioinformatics, 2018-08, Vol.34 (15), p.2666-2669 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty149 ;PMID: 29547981Full text available |
| 9 |
Material Type: Article
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Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differencesBioinformatics (Oxford, England), 2019-06, Vol.35 (12), p.2084-2092 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press. ;The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty895 ;PMID: 30395178Full text available |
| 10 |
Material Type: Article
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QMEANDisCo—distance constraints applied on model quality estimationBioinformatics, 2020-03, Vol.36 (6), p.1765-1771 [Peer Reviewed Journal]The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz828 ;PMID: 31697312Full text available |
| 11 |
Material Type: Article
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ipyrad: Interactive assembly and analysis of RADseq datasetsBioinformatics, 2020-04, Vol.36 (8), p.2592-2594 [Peer Reviewed Journal]The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2020 ;The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz966 ;PMID: 31904816Full text available |
| 12 |
Material Type: Article
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Complex heatmaps reveal patterns and correlations in multidimensional genomic dataBioinformatics (Oxford, England), 2016-09, Vol.32 (18), p.2847-2849 [Peer Reviewed Journal]The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btw313 ;PMID: 27207943Full text available |
| 13 |
Material Type: Article
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MultiQC: summarize analysis results for multiple tools and samples in a single reportBioinformatics (Oxford, England), 2016-10, Vol.32 (19), p.3047-3048 [Peer Reviewed Journal]The Author 2016. Published by Oxford University Press. ;The Author 2016. Published by Oxford University Press. 2016 ;ISSN: 1367-4803 ;ISSN: 1367-4811 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btw354 ;PMID: 27312411Full text available |
| 14 |
Material Type: Article
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GSCALite: a web server for gene set cancer analysisBioinformatics, 2018-11, Vol.34 (21), p.3771-3772 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty411 ;PMID: 29790900Full text available |
| 15 |
Material Type: Article
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DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genomeBioinformatics (Oxford, England), 2021-08, Vol.37 (15), p.2112-2120 [Peer Reviewed Journal]The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2021 ;The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab083 ;PMID: 33538820Full text available |
| 16 |
Material Type: Article
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Cooler: scalable storage for Hi-C data and other genomically labeled arraysBioinformatics, 2020-01, Vol.36 (1), p.311-316 [Peer Reviewed Journal]The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2019 ;The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz540 ;PMID: 31290943Full text available |
| 17 |
Material Type: Article
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Liftoff: accurate mapping of gene annotationsBioinformatics, 2021-07, Vol.37 (12), p.1639-1643 [Peer Reviewed Journal]The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2020 ;The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa1016 ;PMID: 33320174Full text available |
| 18 |
Material Type: Article
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BBKNN: fast batch alignment of single cell transcriptomesBioinformatics, 2020-02, Vol.36 (3), p.964-965 [Peer Reviewed Journal]The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz625 ;PMID: 31400197Full text available |
| 19 |
Material Type: Article
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MetaboAnalystR: an R package for flexible and reproducible analysis of metabolomics dataBioinformatics, 2018-12, Vol.34 (24), p.4313-4314 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty528 ;PMID: 29955821Full text available |
| 20 |
Material Type: Article
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New strategies to improve minimap2 alignment accuracyBioinformatics, 2021-12, Vol.37 (23), p.4572-4574 [Peer Reviewed Journal]The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2021 ;The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab705 ;PMID: 34623391Full text available |
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