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1
A Geometric Construction of (Ƙ, r)-cap in PG(3, q) for q prime, 2 ≤q ≤997
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Article
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A Geometric Construction of (Ƙ, r)-cap in PG(3, q) for q prime, 2 ≤q ≤997

Journal of physics. Conference series, 2022-08, Vol.2322 (1), p.12043 [Peer Reviewed Journal]

Published under licence by IOP Publishing Ltd ;Published under licence by IOP Publishing Ltd. This work is published under http://creativecommons.org/licenses/by/3.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1742-6588 ;EISSN: 1742-6596 ;DOI: 10.1088/1742-6596/2322/1/012043

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2
DREAMER: a computational framework to evaluate readiness of datasets for machine learning
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Article
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DREAMER: a computational framework to evaluate readiness of datasets for machine learning

BMC medical informatics and decision making, 2024-06, Vol.24 (1), p.152-152 [Peer Reviewed Journal]

The Author(s) 2024 ;EISSN: 1472-6947 ;DOI: 10.1186/s12911-024-02544-w ;PMID: 38831432

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3
EIC Software Overview
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Article
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EIC Software Overview

EPJ Web of Conferences, 2024-01, Vol.295, p.03011 [Peer Reviewed Journal]

2024. This work is licensed under https://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and conditions, you may use this content in accordance with the terms of the License. ;ISSN: 2101-6275 ;EISSN: 2100-014X ;DOI: 10.1051/epjconf/202429503011

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4
Multithreading ATLAS offline software: A retrospective
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Conference Proceeding
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Multithreading ATLAS offline software: A retrospective

EPJ Web of Conferences, 2024, Vol.295, p.03024 [Peer Reviewed Journal]

2024. This work is licensed under https://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and conditions, you may use this content in accordance with the terms of the License. ;ISSN: 2101-6275 ;EISSN: 2100-014X ;DOI: 10.1051/epjconf/202429503024

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5
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

PLoS computational biology, 2019-04, Vol.15 (4), p.e1006650-e1006650 [Peer Reviewed Journal]

COPYRIGHT 2019 Public Library of Science ;COPYRIGHT 2019 Public Library of Science ;2019 Bouckaert et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2019 Bouckaert et al 2019 Bouckaert et al ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1006650 ;PMID: 30958812

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6
documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${\text{COSNet}}_i$$\end{document}COSNeti: ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes
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Article
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documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${\text{COSNet}}_i$$\end{document}COSNeti: ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes

BMC bioinformatics, 2021-12, Vol.22 [Peer Reviewed Journal]

The Author(s) 2021 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-021-04510-z ;PMID: 34930116

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7
Better together: Elements of successful scientific software development in a distributed collaborative community
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Article
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Better together: Elements of successful scientific software development in a distributed collaborative community

PLoS computational biology, 2020-05, Vol.16 (5), p.e1007507-e1007507 [Peer Reviewed Journal]

COPYRIGHT 2020 Public Library of Science ;COPYRIGHT 2020 Public Library of Science ;This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication: https://creativecommons.org/publicdomain/zero/1.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1007507 ;PMID: 32365137

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8
An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action [version 2; peer review: 2 approved]
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Article
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An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action [version 2; peer review: 2 approved]

F1000 research, 2020, Vol.9, p.295-295 [Peer Reviewed Journal]

Copyright: © 2021 Anzt H et al. ;Copyright: © 2021 Anzt H et al. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Copyright: © 2021 Anzt H et al. 2021 ;ISSN: 2046-1402 ;EISSN: 2046-1402 ;DOI: 10.12688/f1000research.23224.2 ;PMID: 33552475

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9
Correction: Analysis of Lipid Experiments (ALEX): A Software Framework for Analysis of High-Resolution Shotgun Lipidomics Data
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Article
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Correction: Analysis of Lipid Experiments (ALEX): A Software Framework for Analysis of High-Resolution Shotgun Lipidomics Data

PloS one, 2014-04, Vol.9 (4), p.e93351 [Peer Reviewed Journal]

COPYRIGHT 2014 Public Library of Science ;COPYRIGHT 2014 Public Library of Science ;2014 The PLOS ONE Staff. This is an open-access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2014 The PLOS ONE Staff 2014 The PLOS ONE Staff ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0093351

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10
A Redesigning Software Procedure in Improved Software Management using Machine Learning
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Article
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A Redesigning Software Procedure in Improved Software Management using Machine Learning

IOP conference series. Materials Science and Engineering, 2020-12, Vol.981 (2), p.22046 [Peer Reviewed Journal]

Published under licence by IOP Publishing Ltd ;2020. This work is published under http://creativecommons.org/licenses/by/3.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1757-8981 ;EISSN: 1757-899X ;DOI: 10.1088/1757-899X/981/2/022046

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11
A Study on ML-Based Software Defect Detection for Security Traceability in Smart Healthcare Applications
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Article
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A Study on ML-Based Software Defect Detection for Security Traceability in Smart Healthcare Applications

Sensors (Basel, Switzerland), 2023-03, Vol.23 (7), p.3470 [Peer Reviewed Journal]

COPYRIGHT 2023 MDPI AG ;2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2023 by the authors. 2023 ;ISSN: 1424-8220 ;EISSN: 1424-8220 ;DOI: 10.3390/s23073470 ;PMID: 37050529

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12
A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar
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Article
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A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar

PLoS computational biology, 2022-05, Vol.18 (5), p.e1009123-e1009123 [Peer Reviewed Journal]

COPYRIGHT 2022 Public Library of Science ;2022 Garrison et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2022 Garrison et al 2022 Garrison et al ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1009123 ;PMID: 35639788

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13
EntropyHub: An open-source toolkit for entropic time series analysis
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Article
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EntropyHub: An open-source toolkit for entropic time series analysis

PloS one, 2021-11, Vol.16 (11), p.e0259448-e0259448 [Peer Reviewed Journal]

COPYRIGHT 2021 Public Library of Science ;2021 Flood, Grimm. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2021 Flood, Grimm 2021 Flood, Grimm ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0259448 ;PMID: 34735497

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14
mMass as a software tool for the annotation of cyclic peptide tandem mass spectra
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Article
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mMass as a software tool for the annotation of cyclic peptide tandem mass spectra

PloS one, 2012-09, Vol.7 (9), p.e44913-e44913 [Peer Reviewed Journal]

COPYRIGHT 2012 Public Library of Science ;COPYRIGHT 2012 Public Library of Science ;Niedermeyer, Strohalm. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2012 Niedermeyer, Strohalm 2012 Niedermeyer, Strohalm ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0044913 ;PMID: 23028676

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15
Flexible IoT Agriculture Systems for Irrigation Control Based on Software Services
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Article
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Flexible IoT Agriculture Systems for Irrigation Control Based on Software Services

Sensors (Basel, Switzerland), 2022-12, Vol.22 (24), p.9999 [Peer Reviewed Journal]

COPYRIGHT 2022 MDPI AG ;2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2022 by the authors. 2022 ;ISSN: 1424-8220 ;EISSN: 1424-8220 ;DOI: 10.3390/s22249999 ;PMID: 36560368

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16
Macromolecular structure determination using X‐rays, neutrons and electrons: recent developments in Phenix
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Article
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Macromolecular structure determination using X‐rays, neutrons and electrons: recent developments in Phenix

Acta crystallographica. Section D, Biological crystallography., 2019-10, Vol.75 (10), p.861-877 [Peer Reviewed Journal]

2019 Liebschner et al. published by IUCr Journals. ;open access. ;Copyright Wiley Subscription Services, Inc. Oct 2019 ;Liebschner et al. 2019 2019 ;ISSN: 2059-7983 ;ISSN: 0907-4449 ;EISSN: 2059-7983 ;EISSN: 1399-0047 ;DOI: 10.1107/S2059798319011471 ;PMID: 31588918

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17
A fuzzy TOPSIS based analysis toward selection of effective security requirements engineering approach for trustworthy healthcare software development
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Article
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A fuzzy TOPSIS based analysis toward selection of effective security requirements engineering approach for trustworthy healthcare software development

BMC medical informatics and decision making, 2020-09, Vol.20 (1), p.236-236, Article 236 [Peer Reviewed Journal]

COPYRIGHT 2020 BioMed Central Ltd. ;2020. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2020 ;ISSN: 1472-6947 ;EISSN: 1472-6947 ;DOI: 10.1186/s12911-020-01209-8 ;PMID: 32948169

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18
Reference gene validation for RT-qPCR, a note on different available software packages
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Article
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Reference gene validation for RT-qPCR, a note on different available software packages

PloS one, 2015-03, Vol.10 (3), p.e0122515-e0122515 [Peer Reviewed Journal]

COPYRIGHT 2015 Public Library of Science ;COPYRIGHT 2015 Public Library of Science ;This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication: https://creativecommons.org/publicdomain/zero/1.0/ (the “License”) Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0122515 ;PMID: 25825906

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19
HH-suite3 for fast remote homology detection and deep protein annotation
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Article
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HH-suite3 for fast remote homology detection and deep protein annotation

BMC bioinformatics, 2019-09, Vol.20 (1), p.473-473, Article 473 [Peer Reviewed Journal]

COPYRIGHT 2019 BioMed Central Ltd. ;2019. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-019-3019-7 ;PMID: 31521110

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20
A metamorphic testing approach for event sequences
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Article
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A metamorphic testing approach for event sequences

PloS one, 2019-02, Vol.14 (2), p.e0212476-e0212476 [Peer Reviewed Journal]

COPYRIGHT 2019 Public Library of Science ;COPYRIGHT 2019 Public Library of Science ;2019 Chen et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2019 Chen et al 2019 Chen et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0212476 ;PMID: 30779769

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