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Neural networks to learn protein sequence-function relationships from deep mutational scanning dataProceedings of the National Academy of Sciences - PNAS, 2021-11, Vol.118 (48) [Peer Reviewed Journal]Copyright © 2021 the Author(s). Published by PNAS. ;Copyright National Academy of Sciences Nov 30, 2021 ;Copyright © 2021 the Author(s). Published by PNAS. 2021 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.2104878118 ;PMID: 34815338Full text available |
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Material Type: Article
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UniProt: the Universal Protein Knowledgebase in 2023Nucleic acids research, 2023-01, Vol.51 (D1), p.D523-D531 [Peer Reviewed Journal]The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. 2023 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkac1052 ;PMID: 36408920Full text available |
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Comparative roles of charge, π, and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteinsProceedings of the National Academy of Sciences - PNAS, 2020-11, Vol.117 (46), p.28795-28805 [Peer Reviewed Journal]Copyright National Academy of Sciences Nov 17, 2020 ;2020 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.2008122117 ;PMID: 33139563Full text available |
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Material Type: Article
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CDD/SPARCLE: the conserved domain database in 2020Nucleic acids research, 2020-01, Vol.48 (D1), p.D265-D268 [Peer Reviewed Journal]Published by Oxford University Press on behalf of Nucleic Acids Research 2019. 2019 ;Published by Oxford University Press on behalf of Nucleic Acids Research 2019. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz991 ;PMID: 31777944Digital Resources/Online E-Resources |
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5 |
Material Type: Article
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Protein sequence design with a learned potentialNature communications, 2022-02, Vol.13 (1), p.746-746, Article 746 [Peer Reviewed Journal]2022. The Author(s). ;The Author(s) 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2022 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-022-28313-9 ;PMID: 35136054Full text available |
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Material Type: Article
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The InterPro protein families and domains database: 20 years onNucleic Acids Research, 2021-01, Vol.49 (D1), p.D344-D354 [Peer Reviewed Journal]The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. 2021 ;The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. ;2020. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkaa977 ;PMID: 33156333Digital Resources/Online E-Resources |
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7 |
Material Type: Article
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InterPro in 2022Nucleic acids research, 2023-01, Vol.51 (D1), p.D418-D427 [Peer Reviewed Journal]The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. 2023 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkac993 ;PMID: 36350672Full text available |
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8 |
Material Type: Article
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Fast and sensitive taxonomic classification for metagenomics with KaijuNature communications, 2016-04, Vol.7 (1), p.11257-11257, Article 11257 [Peer Reviewed Journal]Copyright Nature Publishing Group Apr 2016 ;Copyright © 2016, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. 2016 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/ncomms11257 ;PMID: 27071849Full text available |
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9 |
Material Type: Article
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A crowdsourcing open platform for literature curation in UniProtPLoS biology, 2021-12, Vol.19 (12), p.e3001464-e3001464 [Peer Reviewed Journal]2021 Wang et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2021 Wang et al 2021 Wang et al ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.3001464 ;PMID: 34871295Full text available |
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Material Type: Article
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ECNet is an evolutionary context-integrated deep learning framework for protein engineeringNature communications, 2021-09, Vol.12 (1), p.5743-14, Article 5743 [Peer Reviewed Journal]2021. The Author(s). ;The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2021 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-021-25976-8 ;PMID: 34593817Full text available |
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11 |
Material Type: Article
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AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy modelsNucleic acids research, 2022-01, Vol.50 (D1), p.D439-D444 [Peer Reviewed Journal]The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2022 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab1061 ;PMID: 34791371Full text available |
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12 |
Material Type: Article
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The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidencesNucleic acids research, 2022-01, Vol.50 (D1), p.D543-D552 [Peer Reviewed Journal]The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2022 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab1038 ;PMID: 34723319Full text available |
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13 |
Material Type: Article
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COVID-19: Drug Targets and Potential TreatmentsJournal of Medicinal Chemistry, 2020-11 [Peer Reviewed Journal]2020. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://www.acs.org/content/acs/en/terms.html ;DOI: 10.1021/acs.jmedchem.0c00606Digital Resources/Online E-Resources |
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14 |
Material Type: Article
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What Are 3' UTRs Doing?Cold Spring Harbor perspectives in biology, 2019-10, Vol.11 (10), p.a034728 [Peer Reviewed Journal]Copyright © 2019 Cold Spring Harbor Laboratory Press; all rights reserved. ;Copyright Cold Spring Harbor Laboratory Press Oct 2019 ;2019 ;ISSN: 1943-0264 ;EISSN: 1943-0264 ;DOI: 10.1101/cshperspect.a034728 ;PMID: 30181377Full text available |
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15 |
Material Type: Article
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ProtGPT2 is a deep unsupervised language model for protein designNature communications, 2022-07, Vol.13 (1), p.4348-4348, Article 4348 [Peer Reviewed Journal]The Author(s) 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2022 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-022-32007-7 ;PMID: 35896542Full text available |
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16 |
Material Type: Article
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Publisher Correction: Thymosin α1 represents a potential potent single-molecule-based therapy for cystic fibrosisNature medicine, 2018-09, Vol.24 (9), p.1482-1482 [Peer Reviewed Journal]Copyright Nature Publishing Group Sep 2018 ;ISSN: 1078-8956 ;EISSN: 1546-170X ;DOI: 10.1038/s41591-018-0099-2 ;PMID: 29934535Full text available |
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17 |
Material Type: Article
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MAFFT-DASH: integrated protein sequence and structural alignmentNucleic acids research, 2019-07, Vol.47 (W1), p.W5-W10 [Peer Reviewed Journal]The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz342 ;PMID: 31062021Full text available |
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18 |
Material Type: Article
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KEGG as a reference resource for gene and protein annotationNucleic acids research, 2016-01, Vol.44 (D1), p.D457-D462 [Peer Reviewed Journal]The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. 2016 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkv1070 ;PMID: 26476454Full text available |
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19 |
Material Type: Article
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AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulenceScientific reports, 2021-06, Vol.11 (1), p.12728-12728, Article 12728 [Peer Reviewed Journal]This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2021 ;ISSN: 2045-2322 ;EISSN: 2045-2322 ;DOI: 10.1038/s41598-021-91456-0 ;PMID: 34135355Full text available |
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Material Type: Article
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Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequencesProceedings of the National Academy of Sciences - PNAS, 2021-04, Vol.118 (15), p.1 [Peer Reviewed Journal]Copyright © 2021 the Author(s). Published by PNAS. ;COPYRIGHT 2021 National Academy of Sciences ;Copyright National Academy of Sciences Apr 13, 2021 ;Copyright © 2021 the Author(s). Published by PNAS. 2021 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.2016239118 ;PMID: 33876751Full text available |