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Material Type: Article
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ECNet is an evolutionary context-integrated deep learning framework for protein engineeringNature communications, 2021-09, Vol.12 (1), p.5743-14, Article 5743 [Peer Reviewed Journal]2021. The Author(s). ;The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2021 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-021-25976-8 ;PMID: 34593817Full text available |
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Material Type: Article
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The PSIPRED Protein Analysis Workbench: 20 years onNucleic acids research, 2019-07, Vol.47 (W1), p.W402-W407 [Peer Reviewed Journal]The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz297 ;PMID: 31251384Full text available |
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3 |
Material Type: Article
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ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromoleculesNucleic acids research, 2016-07, Vol.44 (W1), p.W344-W350 [Peer Reviewed Journal]The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. 2016 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkw408 ;PMID: 27166375Full text available |
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4 |
Material Type: Article
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CATH: increased structural coverage of functional spaceNucleic acids research, 2021-01, Vol.49 (D1), p.D266-D273 [Peer Reviewed Journal]The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. 2021 ;The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkaa1079 ;PMID: 33237325Full text available |
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5 |
Material Type: Article
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ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acidsNucleic acids research, 2010-07, Vol.38 (Web Server issue), p.W529-W533 [Peer Reviewed Journal]The Author(s) 2010. Published by Oxford University Press. 2010 ;ISSN: 0305-1048 ;ISSN: 1362-4962 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkq399 ;PMID: 20478830Full text available |
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6 |
Material Type: Article
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VDJdb: a curated database of T-cell receptor sequences with known antigen specificityNucleic acids research, 2018-01, Vol.46 (D1), p.D419-D427 [Peer Reviewed Journal]The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. 2018 ;The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkx760 ;PMID: 28977646Full text available |
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7 |
Material Type: Article
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Structural insight into molecular mechanism of poly(ethylene terephthalate) degradationNature communications, 2018-01, Vol.9 (1), p.382-12, Article 382 [Peer Reviewed Journal]2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2018 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-018-02881-1 ;PMID: 29374183Full text available |
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8 |
Material Type: Article
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Embeddings from deep learning transfer GO annotations beyond homologyScientific reports, 2021-01, Vol.11 (1), p.1160-1160, Article 1160 [Peer Reviewed Journal]The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2021 ;ISSN: 2045-2322 ;EISSN: 2045-2322 ;DOI: 10.1038/s41598-020-80786-0 ;PMID: 33441905Full text available |
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9 |
Material Type: Article
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The Pfam protein families databaseNucleic acids research, 2010-01, Vol.38 (Database issue), p.D211-D222 [Peer Reviewed Journal]The Author(s) 2009. Published by Oxford University Press. 2009 ;ISSN: 0305-1048 ;ISSN: 1362-4962 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkp985 ;PMID: 19920124Full text available |
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10 |
Material Type: Article
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Global phosphoproteomic analysis reveals ARMC10 as an AMPK substrate that regulates mitochondrial dynamicsNature communications, 2019-01, Vol.10 (1), p.104-104, Article 104 [Peer Reviewed Journal]This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-018-08004-0 ;PMID: 30631047Full text available |
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11 |
Material Type: Article
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CATH: expanding the horizons of structure-based functional annotations for genome sequencesNucleic acids research, 2019-01, Vol.47 (D1), p.D280-D284 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gky1097 ;PMID: 30398663Full text available |
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12 |
Material Type: Article
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NetGO: improving large-scale protein function prediction with massive network informationNucleic acids research, 2019-07, Vol.47 (W1), p.W379-W387 [Peer Reviewed Journal]The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz388 ;PMID: 31106361Full text available |
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13 |
Material Type: Article
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The current state of SubtiWiki, the database for the model organism Bacillus subtilisNucleic acids research, 2022-01, Vol.50 (D1), p.D875-D882 [Peer Reviewed Journal]The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2022 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab943 ;PMID: 34664671Full text available |
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14 |
Material Type: Article
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ComplexContact: a web server for inter-protein contact prediction using deep learningNucleic acids research, 2018-07, Vol.46 (W1), p.W432-W437 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. 2018 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gky420 ;PMID: 29790960Full text available |
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15 |
Material Type: Article
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IntFOLD: an integrated web resource for high performance protein structure and function predictionNucleic acids research, 2019-07, Vol.47 (W1), p.W408-W413 [Peer Reviewed Journal]The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz322 ;PMID: 31045208Full text available |
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16 |
Material Type: Article
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DECIPHER: harnessing local sequence context to improve protein multiple sequence alignmentBMC bioinformatics, 2015-10, Vol.16 (1), p.322-322, Article 322 [Peer Reviewed Journal]COPYRIGHT 2015 BioMed Central Ltd. ;Copyright BioMed Central 2015 ;Wright. 2015 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-015-0749-z ;PMID: 26445311Full text available |
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17 |
Material Type: Article
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AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contaminationNucleic acids research, 2018-07, Vol.46 (W1), p.W479-W485 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. 2018 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gky359 ;PMID: 29762724Full text available |
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18 |
Material Type: Article
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Recurrent somatic mutation in DROSHA induces microRNA profile changes in Wilms tumourNature communications, 2014-06, Vol.5 (1), p.4039-4039, Article 4039 [Peer Reviewed Journal]Copyright Nature Publishing Group Jun 2014 ;Copyright © 2014, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. 2014 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/ncomms5039 ;PMID: 24909261Full text available |
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19 |
Material Type: Article
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Mini-G proteins: Novel tools for studying GPCRs in their active conformationPloS one, 2017-04, Vol.12 (4), p.e0175642-e0175642 [Peer Reviewed Journal]COPYRIGHT 2017 Public Library of Science ;This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication: https://creativecommons.org/publicdomain/zero/1.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0175642 ;PMID: 28426733Full text available |
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20 |
Material Type: Article
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Combining RNA-seq data and homology-based gene prediction for plants, animals and fungiBMC bioinformatics, 2018-05, Vol.19 (1), p.189-189, Article 189 [Peer Reviewed Journal]COPYRIGHT 2018 BioMed Central Ltd. ;Copyright © 2018. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2018 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-018-2203-5 ;PMID: 29843602Full text available |