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1
Novel Ciliate Genetic Code Variants Including the Reassignment of All Three Stop Codons to Sense Codons in Condylostoma magnum
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Novel Ciliate Genetic Code Variants Including the Reassignment of All Three Stop Codons to Sense Codons in Condylostoma magnum

Molecular biology and evolution, 2016-11, Vol.33 (11), p.2885-2889 [Peer Reviewed Journal]

The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. ;The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. 2016 ;ISSN: 0737-4038 ;EISSN: 1537-1719 ;DOI: 10.1093/molbev/msw166 ;PMID: 27501944

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2
Engineering enzyme activity using an expanded amino acid alphabet
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Engineering enzyme activity using an expanded amino acid alphabet

Protein engineering, design and selection, 2023-01, Vol.36 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press. 2022 ;The Author(s) 2022. Published by Oxford University Press. ;ISSN: 1741-0126 ;EISSN: 1741-0134 ;DOI: 10.1093/protein/gzac013 ;PMID: 36370045

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3
Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes
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Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes

Nucleic acids research, 2019-11, Vol.47 (20), p.10543-10552 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz833 ;PMID: 31584075

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4
An integrated, structure- and energy-based view of the genetic code
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An integrated, structure- and energy-based view of the genetic code

Nucleic acids research, 2016-09, Vol.44 (17), p.8020-8040 [Peer Reviewed Journal]

The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. ;Distributed under a Creative Commons Attribution 4.0 International License ;The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. 2016 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkw608 ;PMID: 27448410

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5
TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations
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TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

Nucleic acids research, 2010-07, Vol.38 (Web Server issue), p.W7-W13 [Peer Reviewed Journal]

The Author(s) 2010. Published by Oxford University Press. 2010 ;ISSN: 0305-1048 ;ISSN: 1362-4962 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkq291 ;PMID: 20435676

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6
Formation, physiology, ecology, evolution and clinical importance of bacterial persisters
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Formation, physiology, ecology, evolution and clinical importance of bacterial persisters

FEMS microbiology reviews, 2017-05, Vol.41 (3), p.219-251 [Peer Reviewed Journal]

FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2017 ;FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;Copyright Oxford University Press, UK May 2017 ;ISSN: 1574-6976 ;ISSN: 0168-6445 ;EISSN: 1574-6976 ;DOI: 10.1093/femsre/fux001 ;PMID: 28333307

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7
Little Evidence the Standard Genetic Code Is Optimized for Resource Conservation
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Little Evidence the Standard Genetic Code Is Optimized for Resource Conservation

Molecular biology and evolution, 2021-11, Vol.38 (11), p.5127-5133 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. 2021 ;The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. ;COPYRIGHT 2021 Oxford University Press ;ISSN: 0737-4038 ;EISSN: 1537-1719 ;DOI: 10.1093/molbev/msab236 ;PMID: 34373928

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8
Large Phylogenomic Data sets Reveal Deep Relationships and Trait Evolution in Chlorophyte Green Algae
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Large Phylogenomic Data sets Reveal Deep Relationships and Trait Evolution in Chlorophyte Green Algae

Genome biology and evolution, 2021-07, Vol.13 (7)

The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. 2021 ;The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. ;ISSN: 1759-6653 ;EISSN: 1759-6653 ;DOI: 10.1093/gbe/evab101 ;PMID: 33950183

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9
A hidden human proteome encoded by ‘non-coding’ genes
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A hidden human proteome encoded by ‘non-coding’ genes

Nucleic acids research, 2019-09, Vol.47 (15), p.8111-8125 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz646 ;PMID: 31340039

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10
Design powerful predictor for mRNA subcellular location prediction in Homo sapiens
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Design powerful predictor for mRNA subcellular location prediction in Homo sapiens

Briefings in bioinformatics, 2021-01, Vol.22 (1), p.526-535 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2020 ;The Author(s) 2020. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;The Author(s) 2020. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com ;ISSN: 1477-4054 ;ISSN: 1467-5463 ;EISSN: 1477-4054 ;DOI: 10.1093/bib/bbz177 ;PMID: 31994694

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11
Applications of genetic code expansion technology in eukaryotes
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Applications of genetic code expansion technology in eukaryotes

Protein & cell, 2024-05, Vol.15 (5), p.331-363 [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press on behalf of Higher Education Press. ;The Author(s) 2023. Published by Oxford University Press on behalf of Higher Education Press. 2023 ;ISSN: 1674-800X ;EISSN: 1674-8018 ;DOI: 10.1093/procel/pwad051 ;PMID: 37847216

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12
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
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CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine

Nucleic acids research, 2007-07, Vol.35 (Web Server issue), p.W345-W349 [Peer Reviewed Journal]

2007 The Author(s) 2007 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkm391 ;PMID: 17631615

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13
iNClusive: a database collecting useful information on non-canonical amino acids and their incorporation into proteins for easier genetic code expansion implementation
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iNClusive: a database collecting useful information on non-canonical amino acids and their incorporation into proteins for easier genetic code expansion implementation

Nucleic acids research, 2024-01, Vol.52 (D1), p.D476-D482 [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. 2024 ;The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkad1090 ;PMID: 37986218

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14
Inosine induces context-dependent recoding and translational stalling
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Inosine induces context-dependent recoding and translational stalling

Nucleic acids research, 2019-01, Vol.47 (1), p.3-14 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gky1163 ;PMID: 30462291

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15
A comprehensive, high-resolution map of a gene's fitness landscape
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A comprehensive, high-resolution map of a gene's fitness landscape

Molecular biology and evolution, 2014-06, Vol.31 (6), p.1581-1592 [Peer Reviewed Journal]

The Author 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. ;Copyright Oxford Publishing Limited(England) Jun 2014 ;The Author 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. 2014 ;ISSN: 0737-4038 ;EISSN: 1537-1719 ;DOI: 10.1093/molbev/msu081 ;PMID: 24567513

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16
Rapid genetic code evolution in green algal mitochondrial genomes
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Rapid genetic code evolution in green algal mitochondrial genomes

Molecular biology and evolution, 2019-04, Vol.36 (4), p.766-783 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. 2019 ;ISSN: 0737-4038 ;EISSN: 1537-1719 ;DOI: 10.1093/molbev/msz016 ;PMID: 30698742

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17
The tRNA discriminator base defines the mutual orthogonality of two distinct pyrrolysyl-tRNA synthetase/tRNAPyl pairs in the same organism
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The tRNA discriminator base defines the mutual orthogonality of two distinct pyrrolysyl-tRNA synthetase/tRNAPyl pairs in the same organism

Nucleic acids research, 2022-05, Vol.50 (8), p.4601-4615 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. 2022 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkac271 ;PMID: 35466371

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18
Illumination of growth, division and secretion by metabolic labeling of the bacterial cell surface
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Illumination of growth, division and secretion by metabolic labeling of the bacterial cell surface

FEMS microbiology reviews, 2015-03, Vol.39 (2), p.184-202 [Peer Reviewed Journal]

FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2015 ;FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com ;FEMS 2015. All rights reserved. For permissions, please e-mail: 2015 ;ISSN: 1574-6976 ;ISSN: 0168-6445 ;EISSN: 1574-6976 ;DOI: 10.1093/femsre/fuu012 ;PMID: 25725012

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19
Deciphering the genetic code of DNA methylation
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Deciphering the genetic code of DNA methylation

Briefings in bioinformatics, 2021-09, Vol.22 (5) [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;The Author(s) 2021. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2021 ;ISSN: 1467-5463 ;EISSN: 1477-4054 ;DOI: 10.1093/bib/bbaa424 ;PMID: 33432324

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20
Genetic code degeneracy is established by the decoding center of the ribosome
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Genetic code degeneracy is established by the decoding center of the ribosome

Nucleic acids research, 2022-04, Vol.50 (7), p.4113-4126 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. 2022 ;The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkac171 ;PMID: 35325219

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