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1
EMNGly: predicting N-linked glycosylation sites using the language models for feature extraction
EMNGly: predicting N-linked glycosylation sites using the language models for feature extraction
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EMNGly: predicting N-linked glycosylation sites using the language models for feature extraction

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11) [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press. 2023 ;ISSN: 1367-4811 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btad650 ;PMID: 37930896

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2
An evolution strategy approach for the balanced minimum evolution problem
An evolution strategy approach for the balanced minimum evolution problem
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An evolution strategy approach for the balanced minimum evolution problem

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11) [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press. 2023 ;ISSN: 1367-4811 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btad660 ;PMID: 37889263

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3
Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites
Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites
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Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11) [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press. 2023 ;ISSN: 1367-4811 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btad627 ;PMID: 37847658

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4
DELFOS—drug efficacy leveraging forked and specialized networks—benchmarking scRNA-seq data in multi-omics-based prediction of cancer sensitivity
DELFOS—drug efficacy leveraging forked and specialized networks—benchmarking scRNA-seq data in multi-omics-based prediction of cancer sensitivity
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DELFOS—drug efficacy leveraging forked and specialized networks—benchmarking scRNA-seq data in multi-omics-based prediction of cancer sensitivity

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11) [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press. 2023 ;ISSN: 1367-4811 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btad645 ;PMID: 37862234

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5
LexicHash: sequence similarity estimation via lexicographic comparison of hashes
LexicHash: sequence similarity estimation via lexicographic comparison of hashes
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LexicHash: sequence similarity estimation via lexicographic comparison of hashes

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11) [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press. 2023 ;ISSN: 1367-4811 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btad652 ;PMID: 37878809

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6
Automated exploitation of deep learning for cancer patient stratification across multiple types
Automated exploitation of deep learning for cancer patient stratification across multiple types
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Automated exploitation of deep learning for cancer patient stratification across multiple types

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11) [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press. 2023 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btad654 ;PMID: 37934154

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7
Optimization of drug–target affinity prediction methods through feature processing schemes
Optimization of drug–target affinity prediction methods through feature processing schemes
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Optimization of drug–target affinity prediction methods through feature processing schemes

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11) [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press. 2023 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btad615 ;PMID: 37812388

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8
A safety framework for flow decomposition problems via integer linear programming
A safety framework for flow decomposition problems via integer linear programming
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A safety framework for flow decomposition problems via integer linear programming

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11) [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press. 2023 ;ISSN: 1367-4811 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btad640 ;PMID: 37862229

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9
Bayesian linear mixed model with multiple random effects for prediction analysis on high-dimensional multi-omics data
Bayesian linear mixed model with multiple random effects for prediction analysis on high-dimensional multi-omics data
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Bayesian linear mixed model with multiple random effects for prediction analysis on high-dimensional multi-omics data

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11) [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press. 2023 ;ISSN: 1367-4811 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btad647 ;PMID: 37882747

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10
PC_ali: a tool for improved multiple alignments and evolutionary inference based on a hybrid protein sequence and structure similarity score
PC_ali: a tool for improved multiple alignments and evolutionary inference based on a hybrid protein sequence and structure similarity score
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PC_ali: a tool for improved multiple alignments and evolutionary inference based on a hybrid protein sequence and structure similarity score

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11) [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press. 2023 ;ISSN: 1367-4811 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btad630 ;PMID: 37847775

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11
THPLM: a sequence-based deep learning framework for protein stability changes prediction upon point variations using pretrained protein language model
THPLM: a sequence-based deep learning framework for protein stability changes prediction upon point variations using pretrained protein language model
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THPLM: a sequence-based deep learning framework for protein stability changes prediction upon point variations using pretrained protein language model

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11) [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press. 2023 ;ISSN: 1367-4811 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btad646 ;PMID: 37874953

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12
Multiple sequence alignment based on deep reinforcement learning with self-attention and positional encoding
Multiple sequence alignment based on deep reinforcement learning with self-attention and positional encoding
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Multiple sequence alignment based on deep reinforcement learning with self-attention and positional encoding

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11) [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press. 2023 ;ISSN: 1367-4811 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btad636 ;PMID: 37856335

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13
Inference of differential key regulatory networks and mechanistic drug repurposing candidates from scRNA-seq data with SCANet
Inference of differential key regulatory networks and mechanistic drug repurposing candidates from scRNA-seq data with SCANet
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Inference of differential key regulatory networks and mechanistic drug repurposing candidates from scRNA-seq data with SCANet

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11) [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press. 2023 ;ISSN: 1367-4811 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btad644 ;PMID: 37862243

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14
Causal associations and genetic overlap between COVID-19 and intelligence
Causal associations and genetic overlap between COVID-19 and intelligence
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Causal associations and genetic overlap between COVID-19 and intelligence

QJM : monthly journal of the Association of Physicians, 2023-10, Vol.116 (9), p.766-773 [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press on behalf of the Association of Physicians. ;The Author(s) 2023. Published by Oxford University Press on behalf of the Association of Physicians. 2023 ;ISSN: 1460-2725 ;EISSN: 1460-2393 ;DOI: 10.1093/qjmed/hcad122 ;PMID: 37286376

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15
A new approach to mentoring for research careers: the National Research Mentoring Network
A new approach to mentoring for research careers: the National Research Mentoring Network
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A new approach to mentoring for research careers: the National Research Mentoring Network

BMC proceedings, 2017-12, Vol.11 (Suppl 12), p.22-22, Article 22 [Peer Reviewed Journal]

The Author(s). 2017 ;ISSN: 1753-6561 ;EISSN: 1753-6561 ;DOI: 10.1186/s12919-017-0083-8 ;PMID: 29375663

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16
Food recalls associated with foodborne disease outbreaks, United States, 2006–2016
Food recalls associated with foodborne disease outbreaks, United States, 2006–2016
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Food recalls associated with foodborne disease outbreaks, United States, 2006–2016

Epidemiology and infection, 2021-07, Vol.149, Article e190 [Peer Reviewed Journal]

The Author(s) 2021 2021 The Author(s) ;ISSN: 0950-2688 ;EISSN: 1469-4409 ;DOI: 10.1017/S0950268821001722 ;PMID: 34275497

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17
Molecular epidemiology of Streptococcus pneumoniae isolated from children with community-acquired pneumonia under 5 years in Chengdu, China
Molecular epidemiology of Streptococcus pneumoniae isolated from children with community-acquired pneumonia under 5 years in Chengdu, China
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Molecular epidemiology of Streptococcus pneumoniae isolated from children with community-acquired pneumonia under 5 years in Chengdu, China

Epidemiology and infection, 2023, Vol.151, Article e2 [Peer Reviewed Journal]

Copyright © The Author(s), 2022. Published by Cambridge University Press ;ISSN: 0950-2688 ;EISSN: 1469-4409 ;DOI: 10.1017/S0950268822001881

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18
A simplified wall-based model for regional innervation/perfusion mismatch assessed by cardiac 123I-mIBG and rest 99mTc-tetrofosmin SPECT to predict arrhythmic events in ischaemic heart failure
A simplified wall-based model for regional innervation/perfusion mismatch assessed by cardiac 123I-mIBG and rest 99mTc-tetrofosmin SPECT to predict arrhythmic events in ischaemic heart failure
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A simplified wall-based model for regional innervation/perfusion mismatch assessed by cardiac 123I-mIBG and rest 99mTc-tetrofosmin SPECT to predict arrhythmic events in ischaemic heart failure

European heart journal cardiovascular imaging, 2022-08, Vol.23 (9), p.1201-1209 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of the European Society of Cardiology. 2021 ;ISSN: 2047-2404 ;EISSN: 2047-2412 ;DOI: 10.1093/ehjci/jeab132 ;PMID: 34427293

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19
Sepsis-associated hospitalisations and antimicrobial use in Hong Kong
Sepsis-associated hospitalisations and antimicrobial use in Hong Kong
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Sepsis-associated hospitalisations and antimicrobial use in Hong Kong

Epidemiology and infection, 2021-10, Vol.149 [Peer Reviewed Journal]

The University of Hong Kong 2021 2021 The University of Hong Kong ;ISSN: 0950-2688 ;EISSN: 1469-4409 ;DOI: 10.1017/S0950268821002193

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20
Novel lncRNA lncRNA001074 participates in the low salinity–induced response in the sea cucumber Apostichopus japonicus by targeting the let-7/NKAa axis
Novel lncRNA lncRNA001074 participates in the low salinity–induced response in the sea cucumber Apostichopus japonicus by targeting the let-7/NKAa axis
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Novel lncRNA lncRNA001074 participates in the low salinity–induced response in the sea cucumber Apostichopus japonicus by targeting the let-7/NKAa axis

Cell stress & chaperones, 2021-09, Vol.26 (5), p.785-798 [Peer Reviewed Journal]

Cell Stress Society International 2021 ;ISSN: 1355-8145 ;EISSN: 1466-1268

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