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1
Plastid and mitochondrion genomic sequences from Arctic Chlorella sp. ArM0029B
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Plastid and mitochondrion genomic sequences from Arctic Chlorella sp. ArM0029B

BMC genomics, 2014-04, Vol.15 (1), p.286-286 [Peer Reviewed Journal]

COPYRIGHT 2014 BioMed Central Ltd. ;COPYRIGHT 2014 BioMed Central Ltd. ;2014 Jeong et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. ;Copyright © 2014 Jeong et al.; licensee BioMed Central Ltd. 2014 Jeong et al.; licensee BioMed Central Ltd. ;ISSN: 1471-2164 ;EISSN: 1471-2164 ;DOI: 10.1186/1471-2164-15-286 ;PMID: 24735464

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2
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes
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BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes

Molecular biology and evolution, 2021-10, Vol.38 (10), p.4647-4654 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. 2021 ;The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. ;COPYRIGHT 2021 Oxford University Press ;ISSN: 1537-1719 ;ISSN: 0737-4038 ;EISSN: 1537-1719 ;DOI: 10.1093/molbev/msab199 ;PMID: 34320186

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3
OrthoFinder: phylogenetic orthology inference for comparative genomics
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OrthoFinder: phylogenetic orthology inference for comparative genomics

Genome Biology, 2019-11, Vol.20 (1), p.238-238, Article 238 [Peer Reviewed Journal]

The Author(s). 2019 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-019-1832-y ;PMID: 31727128

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4
Am I ready for CRISPR? A user's guide to genetic screens
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Am I ready for CRISPR? A user's guide to genetic screens

Nature reviews. Genetics, 2018-02, Vol.19 (2), p.67-80 [Peer Reviewed Journal]

COPYRIGHT 2018 Nature Publishing Group ;COPYRIGHT 2018 Nature Publishing Group ;Copyright Nature Publishing Group Feb 2018 ;ISSN: 1471-0056 ;EISSN: 1471-0064 ;DOI: 10.1038/nrg.2017.97 ;PMID: 29199283

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5
Alternative splicing as a source of phenotypic diversity
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Alternative splicing as a source of phenotypic diversity

Nature reviews. Genetics, 2022-11, Vol.23 (11), p.697-710 [Peer Reviewed Journal]

Springer Nature Limited 2022. ;ISSN: 1471-0056 ;EISSN: 1471-0064 ;DOI: 10.1038/s41576-022-00514-4

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6
eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale
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eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale

Molecular biology and evolution, 2021-12, Vol.38 (12), p.5825-5829 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. 2021 ;The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. ;COPYRIGHT 2021 Oxford University Press ;ISSN: 1537-1719 ;ISSN: 0737-4038 ;EISSN: 1537-1719 ;DOI: 10.1093/molbev/msab293 ;PMID: 34597405

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7
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Genome biology, 2014-12, Vol.15 (12), p.550-550, Article 550 [Peer Reviewed Journal]

Love et al.; licensee BioMed Central. 2014 ;ISSN: 1474-760X ;ISSN: 1465-6906 ;EISSN: 1474-760X ;EISSN: 1465-6914 ;DOI: 10.1186/s13059-014-0550-8 ;PMID: 25516281

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8
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
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Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression

Genome Biology, 2019-12, Vol.20 (1), p.296-296, Article 296 [Peer Reviewed Journal]

2019. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-019-1874-1 ;PMID: 31870423

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9
The Gene Ontology knowledgebase in 2023
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The Gene Ontology knowledgebase in 2023

Genetics (Austin), 2023-05, Vol.224 (1) [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press on behalf of The Genetics Society of America. 2023 ;EISSN: 1943-2631 ;DOI: 10.1093/genetics/iyad031

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10
The genomic landscape of pediatric acute lymphoblastic leukemia
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Article
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The genomic landscape of pediatric acute lymphoblastic leukemia

Nature genetics, 2022-09, Vol.54 (9), p.1376-1389 [Peer Reviewed Journal]

2022. The Author(s), under exclusive licence to Springer Nature America, Inc. ;Copyright Nature Publishing Group Sep 2022 ;ISSN: 1061-4036 ;EISSN: 1546-1718 ;DOI: 10.1038/s41588-022-01159-z ;PMID: 36050548

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11
Chromatin accessibility and the regulatory epigenome
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Chromatin accessibility and the regulatory epigenome

Nature reviews. Genetics, 2019-04, Vol.20 (4), p.207-220 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;COPYRIGHT 2019 Nature Publishing Group ;2018© Springer Nature Limited 2018 ;ISSN: 1471-0056 ;EISSN: 1471-0064 ;DOI: 10.1038/s41576-018-0089-8 ;PMID: 30675018

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12
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases
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Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases

Nature genetics, 2017-04, Vol.49 (4), p.515-526 [Peer Reviewed Journal]

Copyright Nature Publishing Group Apr 2017 ;ISSN: 1061-4036 ;ISSN: 1546-1718 ;EISSN: 1546-1718 ;DOI: 10.1038/ng.3792 ;PMID: 28191889

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13
xCell: digitally portraying the tissue cellular heterogeneity landscape
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xCell: digitally portraying the tissue cellular heterogeneity landscape

Genome Biology, 2017-11, Vol.18 (1), p.220-220, Article 220 [Peer Reviewed Journal]

2017. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s). 2017 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-017-1349-1 ;PMID: 29141660

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14
Model-free Estimation of Recent Genetic Relatedness
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Model-free Estimation of Recent Genetic Relatedness

American journal of human genetics, 2016-01, Vol.98 (1), p.127-148 [Peer Reviewed Journal]

2016 The American Society of Human Genetics ;Copyright © 2016 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved. ;Copyright Cell Press Jan 7, 2016 ;2016 by The American Society of Human Genetics. All rights reserved. 2016 The American Society of Human Genetics ;ISSN: 0002-9297 ;EISSN: 1537-6605 ;DOI: 10.1016/j.ajhg.2015.11.022 ;PMID: 26748516

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15
A benchmark of batch-effect correction methods for single-cell RNA sequencing data
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A benchmark of batch-effect correction methods for single-cell RNA sequencing data

Genome Biology, 2020-01, Vol.21 (1), p.12-12, Article 12 [Peer Reviewed Journal]

2020. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s). 2020 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-019-1850-9 ;PMID: 31948481

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16
Large-scale association analyses identify host factors influencing human gut microbiome composition
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Large-scale association analyses identify host factors influencing human gut microbiome composition

Nature genetics, 2021-02, Vol.53 (2), p.156-165 [Peer Reviewed Journal]

COPYRIGHT 2021 Nature Publishing Group ;ISSN: 1061-4036 ;ISSN: 1546-1718 ;EISSN: 1546-1718 ;DOI: 10.1038/s41588-020-00763-1 ;PMID: 33462485

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17
PIWI-interacting RNAs: small RNAs with big functions
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PIWI-interacting RNAs: small RNAs with big functions

Nature reviews. Genetics, 2019-02, Vol.20 (2), p.89-108 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;Copyright Nature Publishing Group Feb 2019 ;ISSN: 1471-0056 ;EISSN: 1471-0064 ;DOI: 10.1038/s41576-018-0073-3 ;PMID: 30446728

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18
Durum wheat genome highlights past domestication signatures and future improvement targets
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Durum wheat genome highlights past domestication signatures and future improvement targets

Nature genetics, 2019-05, Vol.51 (5), p.885-895 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;COPYRIGHT 2019 Nature Publishing Group ;Copyright Nature Publishing Group May 2019 ;ISSN: 1061-4036 ;EISSN: 1546-1718 ;DOI: 10.1038/s41588-019-0381-3 ;PMID: 30962619

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19
ACMG SF v3.0 list for reporting of secondary findings in clinical exome and genome sequencing: a policy statement of the American College of Medical Genetics and Genomics (ACMG)
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ACMG SF v3.0 list for reporting of secondary findings in clinical exome and genome sequencing: a policy statement of the American College of Medical Genetics and Genomics (ACMG)

Genetics in medicine, 2021-08, Vol.23 (8), p.1381-1390 [Peer Reviewed Journal]

2021 The Author(s) ;The Author(s), under exclusive licence to the American College of Medical Genetics and Genomics 2021. corrected publication 2021. ;ISSN: 1098-3600 ;EISSN: 1530-0366 ;DOI: 10.1038/s41436-021-01172-3 ;PMID: 34012068

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20
The Ensembl Variant Effect Predictor
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Article
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The Ensembl Variant Effect Predictor

Genome Biology, 2016-06, Vol.17 (1), p.122-122, Article 122 [Peer Reviewed Journal]

2016. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;McLaren et al. 2016 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-016-0974-4 ;PMID: 27268795

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