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1
High-fat diet modifies the PPAR-γ pathway leading to disruption of microbial and physiological ecosystem in murine small intestine
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High-fat diet modifies the PPAR-γ pathway leading to disruption of microbial and physiological ecosystem in murine small intestine

Proceedings of the National Academy of Sciences - PNAS, 2016-10, Vol.113 (40), p.E5934-E5943 [Peer Reviewed Journal]

Volumes 1–89 and 106–113, copyright as a collective work only; author(s) retains copyright to individual articles ;Attribution - NonCommercial ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1612559113 ;PMID: 27638207

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2
Daily Sampling Reveals Personalized Diet-Microbiome Associations in Humans
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Daily Sampling Reveals Personalized Diet-Microbiome Associations in Humans

Cell host & microbe, 2019-06, Vol.25 (6), p.789-802.e5 [Peer Reviewed Journal]

2019 Elsevier Inc. ;Copyright © 2019 Elsevier Inc. All rights reserved. ;ISSN: 1931-3128 ;EISSN: 1934-6069 ;DOI: 10.1016/j.chom.2019.05.005 ;PMID: 31194939

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3
Gut microbiota associations with common diseases and prescription medications in a population-based cohort
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Gut microbiota associations with common diseases and prescription medications in a population-based cohort

Nature communications, 2018-07, Vol.9 (1), p.2655-8, Article 2655 [Peer Reviewed Journal]

2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2018 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-018-05184-7 ;PMID: 29985401

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4
Human genetics shape the gut microbiome
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Human genetics shape the gut microbiome

Cell, 2014-11, Vol.159 (4), p.789-799 [Peer Reviewed Journal]

2014 Elsevier Inc. All rights reserved. 2014 ;ISSN: 0092-8674 ;EISSN: 1097-4172 ;DOI: 10.1016/j.cell.2014.09.053 ;PMID: 25417156

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5
Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life
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Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

Cell host & microbe, 2015-05, Vol.17 (5), p.690-703 [Peer Reviewed Journal]

2015 Elsevier Inc. ;Copyright © 2015 Elsevier Inc. All rights reserved. ;ISSN: 1931-3128 ;ISSN: 1934-6069 ;EISSN: 1934-6069 ;DOI: 10.1016/j.chom.2015.04.004 ;PMID: 25974306

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6
Functional and Genomic Variation between Human-Derived Isolates of Lachnospiraceae Reveals Inter- and Intra-Species Diversity
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Functional and Genomic Variation between Human-Derived Isolates of Lachnospiraceae Reveals Inter- and Intra-Species Diversity

Cell host & microbe, 2020-07, Vol.28 (1), p.134-146.e4 [Peer Reviewed Journal]

2020 Elsevier Inc. ;Copyright © 2020 Elsevier Inc. All rights reserved. ;ISSN: 1931-3128 ;EISSN: 1934-6069 ;DOI: 10.1016/j.chom.2020.05.005 ;PMID: 32492369

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7
Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes
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Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes

Cell, 2019-08, Vol.178 (4), p.795-806.e12 [Peer Reviewed Journal]

2019 ;Published by Elsevier Inc. ;ISSN: 0092-8674 ;EISSN: 1097-4172 ;DOI: 10.1016/j.cell.2019.07.008 ;PMID: 31398337

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8
Disease-associated gut microbiome and metabolome changes in patients with chronic obstructive pulmonary disease
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Disease-associated gut microbiome and metabolome changes in patients with chronic obstructive pulmonary disease

Nature communications, 2020-11, Vol.11 (1), p.5886-5886, Article 5886 [Peer Reviewed Journal]

The Author(s) 2020 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-020-19701-0 ;PMID: 33208745

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9
Impact of delivery mode-associated gut microbiota dynamics on health in the first year of life
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Impact of delivery mode-associated gut microbiota dynamics on health in the first year of life

Nature communications, 2019-11, Vol.10 (1), p.4997-12, Article 4997 [Peer Reviewed Journal]

2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-13014-7 ;PMID: 31676793

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10
Exploring the effects of transport duration on the fecal microbial communities of surplus dairy calves
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Article
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Exploring the effects of transport duration on the fecal microbial communities of surplus dairy calves

Journal of dairy science, 2024-06, Vol.107 (6), p.3863-3884 [Peer Reviewed Journal]

2024 American Dairy Science Association ;The Authors. Published by Elsevier Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). ;ISSN: 0022-0302 ;EISSN: 1525-3198 ;DOI: 10.3168/jds.2023-24002 ;PMID: 38216047

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11
Depicting SARS-CoV-2 faecal viral activity in association with gut microbiota composition in patients with COVID-19
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Article
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Depicting SARS-CoV-2 faecal viral activity in association with gut microbiota composition in patients with COVID-19

Gut, 2021-02, Vol.70 (2), p.276-284 [Peer Reviewed Journal]

Author(s) (or their employer(s)) 2021. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. ;2021 Author(s) (or their employer(s)) 2021. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/4.0/ . Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Author(s) (or their employer(s)) 2021. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. 2021 ;ISSN: 0017-5749 ;EISSN: 1468-3288 ;DOI: 10.1136/gutjnl-2020-322294 ;PMID: 32690600

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12
Sialylated Milk Oligosaccharides Promote Microbiota-Dependent Growth in Models of Infant Undernutrition
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Sialylated Milk Oligosaccharides Promote Microbiota-Dependent Growth in Models of Infant Undernutrition

Cell, 2016-02, Vol.164 (5), p.859-871 [Peer Reviewed Journal]

2016 Elsevier Inc. ;Copyright © 2016 Elsevier Inc. All rights reserved. ;ISSN: 0092-8674 ;EISSN: 1097-4172 ;DOI: 10.1016/j.cell.2016.01.024 ;PMID: 26898329

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13
The oral microbiota in colorectal cancer is distinctive and predictive
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Article
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The oral microbiota in colorectal cancer is distinctive and predictive

Gut, 2018-08, Vol.67 (8), p.1454-1463 [Peer Reviewed Journal]

Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted. ;Copyright: 2018 © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted. ;Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted. 2018 ;ISSN: 0017-5749 ;EISSN: 1468-3288 ;DOI: 10.1136/gutjnl-2017-314814 ;PMID: 28988196

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14
Microbiota as Predictor of Mortality in Allogeneic Hematopoietic-Cell Transplantation
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Article
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Microbiota as Predictor of Mortality in Allogeneic Hematopoietic-Cell Transplantation

The New England journal of medicine, 2020-02, Vol.382 (9), p.822-834 [Peer Reviewed Journal]

Copyright © 2020 Massachusetts Medical Society. All rights reserved. ;Copyright © 2020 Massachusetts Medical Society. ;ISSN: 0028-4793 ;EISSN: 1533-4406 ;DOI: 10.1056/NEJMoa1900623 ;PMID: 32101664

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15
A purified membrane protein from Akkermansia muciniphila or the pasteurised bacterium blunts colitis associated tumourigenesis by modulation of CD8+ T cells in mice
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Article
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A purified membrane protein from Akkermansia muciniphila or the pasteurised bacterium blunts colitis associated tumourigenesis by modulation of CD8+ T cells in mice

Gut, 2020-11, Vol.69 (11), p.1988-1997 [Peer Reviewed Journal]

Author(s) (or their employer(s)) 2020. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. ;2020 Author(s) (or their employer(s)) 2020. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/4.0/ . Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Author(s) (or their employer(s)) 2020. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. 2020 ;ISSN: 0017-5749 ;EISSN: 1468-3288 ;DOI: 10.1136/gutjnl-2019-320105 ;PMID: 32169907

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16
Impact of commonly used drugs on the composition and metabolic function of the gut microbiota
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Article
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Impact of commonly used drugs on the composition and metabolic function of the gut microbiota

Nature communications, 2020-01, Vol.11 (1), p.362-11, Article 362 [Peer Reviewed Journal]

This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2020 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-14177-z ;PMID: 31953381

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17
The microbiome of professional athletes differs from that of more sedentary subjects in composition and particularly at the functional metabolic level
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Article
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The microbiome of professional athletes differs from that of more sedentary subjects in composition and particularly at the functional metabolic level

Gut, 2018-04, Vol.67 (4), p.625-633 [Peer Reviewed Journal]

Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing ;Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/. ;Copyright: 2018 Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing ;ISSN: 0017-5749 ;EISSN: 1468-3288 ;DOI: 10.1136/gutjnl-2016-313627 ;PMID: 28360096

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18
Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians
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Article
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Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians

Nature (London), 2021-11, Vol.599 (7885), p.458-464 [Peer Reviewed Journal]

2021. The Author(s), under exclusive licence to Springer Nature Limited. ;COPYRIGHT 2021 Nature Publishing Group ;Copyright Nature Publishing Group Nov 18, 2021 ;ISSN: 0028-0836 ;EISSN: 1476-4687 ;DOI: 10.1038/s41586-021-03832-5 ;PMID: 34325466

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19
Revealing the bacterial butyrate synthesis pathways by analyzing (meta)genomic data
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Article
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Revealing the bacterial butyrate synthesis pathways by analyzing (meta)genomic data

mBio, 2014-04, Vol.5 (2), p.e00889-e00889 [Peer Reviewed Journal]

Copyright © 2014 Vital et al. 2014 Vital et al. ;ISSN: 2161-2129 ;EISSN: 2150-7511 ;DOI: 10.1128/mbio.00889-14 ;PMID: 24757212

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20
Host variables confound gut microbiota studies of human disease
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Host variables confound gut microbiota studies of human disease

Nature (London), 2020-11, Vol.587 (7834), p.448-454 [Peer Reviewed Journal]

COPYRIGHT 2020 Nature Publishing Group ;Copyright Nature Publishing Group Nov 19, 2020 ;ISSN: 0028-0836 ;EISSN: 1476-4687 ;DOI: 10.1038/s41586-020-2881-9 ;PMID: 33149306

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