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1
Metabolic dependencies drive species co-occurrence in diverse microbial communities
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Metabolic dependencies drive species co-occurrence in diverse microbial communities

Proceedings of the National Academy of Sciences - PNAS, 2015-05, Vol.112 (20), p.6449-6454 [Peer Reviewed Journal]

Volumes 1–89 and 106–112, copyright as a collective work only; author(s) retains copyright to individual articles ;Copyright National Academy of Sciences May 19, 2015 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1421834112 ;PMID: 25941371

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2
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
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Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

Nature communications, 2019-03, Vol.10 (1), p.1124-12, Article 1124 [Peer Reviewed Journal]

This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;Wageningen University & Research ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-08853-3 ;PMID: 30850636

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3
Unravelling the effects of the environment and host genotype on the gut microbiome
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Unravelling the effects of the environment and host genotype on the gut microbiome

Nature reviews. Microbiology, 2011-04, Vol.9 (4), p.279-290 [Peer Reviewed Journal]

COPYRIGHT 2011 Nature Publishing Group ;Copyright Nature Publishing Group Apr 2011 ;ISSN: 1740-1526 ;EISSN: 1740-1534 ;DOI: 10.1038/nrmicro2540 ;PMID: 21407244

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4
Bacteria as Emerging Indicators of Soil Condition
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Bacteria as Emerging Indicators of Soil Condition

Applied and environmental microbiology, 2017-01, Vol.83 (1), p.E02826 [Peer Reviewed Journal]

Copyright © 2016 American Society for Microbiology. ;Copyright © 2016 American Society for Microbiology. 2016 American Society for Microbiology ;ISSN: 0099-2240 ;EISSN: 1098-5336 ;DOI: 10.1128/aem.02826-16 ;PMID: 27793827 ;CODEN: AEMIDF

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5
Enhanced growth of halophyte plants in biochar-amended coastal soil: roles of nutrient availability and rhizosphere microbial modulation
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Enhanced growth of halophyte plants in biochar-amended coastal soil: roles of nutrient availability and rhizosphere microbial modulation

Plant, cell and environment, 2018-03 [Peer Reviewed Journal]

Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 0140-7791 ;EISSN: 1365-3040 ;DOI: 10.1111/pce.12944

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6
Quantifying the Importance of the Rare Biosphere for Microbial Community Response to Organic Pollutants in a Freshwater Ecosystem
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Quantifying the Importance of the Rare Biosphere for Microbial Community Response to Organic Pollutants in a Freshwater Ecosystem

Applied and environmental microbiology, 2017-04, Vol.83 (8), p.E03321 [Peer Reviewed Journal]

Copyright © 2017 American Society for Microbiology. ;Copyright © 2017 American Society for Microbiology. 2017 American Society for Microbiology ;ISSN: 0099-2240 ;EISSN: 1098-5336 ;DOI: 10.1128/AEM.03321-16 ;PMID: 28258138 ;CODEN: AEMIDF

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7
Cell morphology drives spatial patterning in microbial communities
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Cell morphology drives spatial patterning in microbial communities

Proceedings of the National Academy of Sciences - PNAS, 2017-01, Vol.114 (3), p.E280-E286 [Peer Reviewed Journal]

Volumes 1–89 and 106–113, copyright as a collective work only; author(s) retains copyright to individual articles ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1613007114 ;PMID: 28039436

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8
Genetic Determinants of the Gut Microbiome in UK Twins
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Genetic Determinants of the Gut Microbiome in UK Twins

Cell host & microbe, 2016-05, Vol.19 (5), p.731-743 [Peer Reviewed Journal]

2016 Elsevier Inc. ;Copyright © 2016 Elsevier Inc. All rights reserved. ;ISSN: 1931-3128 ;EISSN: 1934-6069 ;DOI: 10.1016/j.chom.2016.04.017 ;PMID: 27173935

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9
Microbial community responses to anthropogenically induced environmental change: towards a systems approach
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Microbial community responses to anthropogenically induced environmental change: towards a systems approach

Ecology letters, 2013-05, Vol.16 (s1), p.128-139 [Peer Reviewed Journal]

2013 John Wiley & Sons Ltd/CNRS and Commonwealth of Australia ;2013 John Wiley & Sons Ltd/CNRS and Commonwealth of Australia. ;ISSN: 1461-023X ;EISSN: 1461-0248 ;DOI: 10.1111/ele.12109 ;PMID: 23679012

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10
The clinical impact of bacterial biofilms
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The clinical impact of bacterial biofilms

International journal of oral science, 2011-04, Vol.3 (2), p.55-65 [Peer Reviewed Journal]

Copyright Nature Publishing Group Apr 2011 ;Copyright © Wanfang Data Co. Ltd. All Rights Reserved. ;Copyright © 2011 West China School of Stomatology 2011 West China School of Stomatology ;ISSN: 1674-2818 ;EISSN: 2049-3169 ;DOI: 10.4248/IJOS11026 ;PMID: 21485309

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11
Loss of microbial diversity in soils is coincident with reductions in some specialized functions
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Loss of microbial diversity in soils is coincident with reductions in some specialized functions

Environmental microbiology, 2014-08, Vol.16 (8), p.2408-2420 [Peer Reviewed Journal]

2014 Society for Applied Microbiology and John Wiley & Sons Ltd ;2015 INIST-CNRS ;2014 Society for Applied Microbiology and John Wiley & Sons Ltd. ;ISSN: 1462-2912 ;ISSN: 1462-2920 ;EISSN: 1462-2920 ;DOI: 10.1111/1462-2920.12353 ;PMID: 24422656

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12
Changes in the microbial community of an anammox consortium during adaptation to marine conditions revealed by 454 pyrosequencing
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Changes in the microbial community of an anammox consortium during adaptation to marine conditions revealed by 454 pyrosequencing

Applied microbiology and biotechnology, 2017-06, Vol.101 (12), p.5149-5162 [Peer Reviewed Journal]

Springer-Verlag Berlin Heidelberg 2017 ;COPYRIGHT 2017 Springer ;Applied Microbiology and Biotechnology is a copyright of Springer, 2017. ;ISSN: 0175-7598 ;EISSN: 1432-0614 ;DOI: 10.1007/s00253-017-8160-5 ;PMID: 28280868

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13
Microbiome evolution during host aging
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Microbiome evolution during host aging

PLoS pathogens, 2019-07, Vol.15 (7), p.e1007727-e1007727 [Peer Reviewed Journal]

COPYRIGHT 2019 Public Library of Science ;COPYRIGHT 2019 Public Library of Science ;2019 Aleman, Valenzano. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2019 Aleman, Valenzano 2019 Aleman, Valenzano ;ISSN: 1553-7374 ;ISSN: 1553-7366 ;EISSN: 1553-7374 ;DOI: 10.1371/journal.ppat.1007727 ;PMID: 31344129

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14
Complementary symbiont contributions to plant decomposition in a fungus-farming termite
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Complementary symbiont contributions to plant decomposition in a fungus-farming termite

Proceedings of the National Academy of Sciences - PNAS, 2014-10, Vol.111 (40), p.14500-14505 [Peer Reviewed Journal]

copyright © 1993–2008 National Academy of Sciences of the United States of America ;Copyright National Academy of Sciences Oct 7, 2014 ;Wageningen University & Research ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1319718111 ;PMID: 25246537

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15
Open challenges for microbial network construction and analysis
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Open challenges for microbial network construction and analysis

The ISME Journal, 2021-11, Vol.15 (11), p.3111-3118 [Peer Reviewed Journal]

2021. The Author(s). ;The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2021 ;ISSN: 1751-7362 ;EISSN: 1751-7370 ;DOI: 10.1038/s41396-021-01027-4 ;PMID: 34108668

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16
Bacterial community compositions in sediment polluted by perfluoroalkyl acids (PFAAs) using Illumina high-throughput sequencing
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Bacterial community compositions in sediment polluted by perfluoroalkyl acids (PFAAs) using Illumina high-throughput sequencing

Environmental science and pollution research international, 2016-06, Vol.23 (11), p.10556-10565 [Peer Reviewed Journal]

Springer-Verlag Berlin Heidelberg 2016 ;ISSN: 0944-1344 ;EISSN: 1614-7499 ;DOI: 10.1007/s11356-016-6055-0 ;PMID: 26780047

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17
Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning
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Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

Nature communications, 2019-10, Vol.10 (1), p.4841-10, Article 4841 [Peer Reviewed Journal]

2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-12798-y ;PMID: 31649246

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18
Linking the Belowground Microbial Composition, Diversity and Activity to Soilborne Disease Suppression and Growth Promotion of Tomato Amended with Biochar
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Article
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Linking the Belowground Microbial Composition, Diversity and Activity to Soilborne Disease Suppression and Growth Promotion of Tomato Amended with Biochar

Scientific reports, 2017-03, Vol.7 (1), p.44382-44382, Article 44382 [Peer Reviewed Journal]

Copyright Nature Publishing Group Mar 2017 ;Copyright © 2017, The Author(s) 2017 The Author(s) ;ISSN: 2045-2322 ;EISSN: 2045-2322 ;DOI: 10.1038/srep44382 ;PMID: 28287177

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19
Stochastic Community Assembly: Does It Matter in Microbial Ecology?
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Stochastic Community Assembly: Does It Matter in Microbial Ecology?

Microbiology and molecular biology reviews, 2017-12, Vol.81 (4) [Peer Reviewed Journal]

Copyright © 2017 American Society for Microbiology. ;Copyright American Society for Microbiology Dec 2017 ;Copyright © 2017 American Society for Microbiology. 2017 American Society for Microbiology ;ISSN: 1092-2172 ;EISSN: 1098-5557 ;DOI: 10.1128/MMBR.00002-17 ;PMID: 29021219

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20
Sedimentary DNA Reveals Cyanobacterial Community Diversity over 200 Years in Two Perialpine Lakes
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Sedimentary DNA Reveals Cyanobacterial Community Diversity over 200 Years in Two Perialpine Lakes

Applied and environmental microbiology, 2016-11, Vol.82 (21), p.6472-6482 [Peer Reviewed Journal]

Copyright © 2016, American Society for Microbiology. All Rights Reserved. ;Copyright American Society for Microbiology Nov 2016 ;Copyright © 2016, American Society for Microbiology. All Rights Reserved. 2016 American Society for Microbiology ;ISSN: 0099-2240 ;EISSN: 1098-5336 ;DOI: 10.1128/aem.02174-16 ;PMID: 27565621 ;CODEN: AEMIDF

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