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1
Computational Methods for Next Generation Sequencing Data Analysis
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Book
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Computational Methods for Next Generation Sequencing Data Analysis

ISBN: 1118169484 ;ISBN: 9781118169483 ;EISBN: 1119272173 ;EISBN: 9781119272175 ;EISBN: 1119272165 ;EISBN: 9781119272168 ;DOI: 10.1002/9781119272182 ;OCLC: 959149276

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2
Controlling CRISPR-Cas9 activity
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Article
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Controlling CRISPR-Cas9 activity

Nature reviews. Drug discovery, 2019-07, Vol.18 (7), p.500-500 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;Nature 2019. ;ISSN: 1474-1776 ;EISSN: 1474-1784 ;DOI: 10.1038/d41573-019-00094-9 ;PMID: 31267075

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3
Erratum for Miller et al., “Phylogenetic and Biogeographic Patterns of Vibrio parahaemolyticus Strains from North America Inferred from Whole-Genome Sequence Data”
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Article
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Erratum for Miller et al., “Phylogenetic and Biogeographic Patterns of Vibrio parahaemolyticus Strains from North America Inferred from Whole-Genome Sequence Data”

Applied and environmental microbiology, 2021-05, Vol.87 (12), p.1-e0069321 [Peer Reviewed Journal]

Copyright © 2021 American Society for Microbiology. ;Copyright American Society for Microbiology May 2021 ;Copyright © 2021 American Society for Microbiology. 2021 American Society for Microbiology ;ISSN: 0099-2240 ;EISSN: 1098-5336 ;DOI: 10.1128/AEM.00693-21 ;PMID: 34037462

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4
Spatial and temporal characterization of the rich fraction of plastid DNA present in the nuclear genome of Moringa oleifera reveals unanticipated complexity in NUPTs´ formation
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Article
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Spatial and temporal characterization of the rich fraction of plastid DNA present in the nuclear genome of Moringa oleifera reveals unanticipated complexity in NUPTs´ formation

BMC genomics, 2024-01, Vol.25 (1) [Peer Reviewed Journal]

COPYRIGHT 2024 BioMed Central Ltd. ;ISSN: 1471-2164 ;EISSN: 1471-2164 ;DOI: 10.1186/s12864-024-09979-5

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5
De novo reconstruction of satellite repeat units from sequence data
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Article
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De novo reconstruction of satellite repeat units from sequence data

Genome research, 2023-11, Vol.33 (11), p.1994-2001 [Peer Reviewed Journal]

2023 Zhang et al.; Published by Cold Spring Harbor Laboratory Press. ;Copyright Cold Spring Harbor Laboratory Press Nov 2023 ;2023 ;ISSN: 1088-9051 ;EISSN: 1549-5469 ;DOI: 10.1101/gr.278005.123 ;PMID: 37918962

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6
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
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Article
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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Genome biology, 2013-04, Vol.14 (4), p.R36-R36 [Peer Reviewed Journal]

Copyright © 2013 Kim et al.; licensee BioMed Central Ltd. 2013 Kim et al.; licensee BioMed Central Ltd. ;ISSN: 1465-6906 ;EISSN: 1465-6914 ;EISSN: 1474-760X ;DOI: 10.1186/gb-2013-14-4-r36 ;PMID: 23618408

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7
AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
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Article
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AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence

Scientific reports, 2021-06, Vol.11 (1), p.12728-12728, Article 12728 [Peer Reviewed Journal]

This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2021 ;ISSN: 2045-2322 ;EISSN: 2045-2322 ;DOI: 10.1038/s41598-021-91456-0 ;PMID: 34135355

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8
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
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Article
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Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

Nature methods, 2021-02, Vol.18 (2), p.170-175 [Peer Reviewed Journal]

COPYRIGHT 2021 Nature Publishing Group ;The Author(s), under exclusive licence to Springer Nature America, Inc. 2021. ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-020-01056-5 ;PMID: 33526886

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9
Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus
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Article
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Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus

Nature medicine, 2022-08, Vol.28 (8), p.1569-1572 [Peer Reviewed Journal]

2022. The Author(s). ;The Author(s) 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2022 ;ISSN: 1078-8956 ;EISSN: 1546-170X ;DOI: 10.1038/s41591-022-01907-y ;PMID: 35750157

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10
Retraction: Novel insights into Pinus species plastids genome through phylogenetic relationships and repeat sequence analysis
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Article
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Retraction: Novel insights into Pinus species plastids genome through phylogenetic relationships and repeat sequence analysis

PloS one, 2023-04, Vol.18 (4), p.e0283918-e0283918 [Peer Reviewed Journal]

COPYRIGHT 2023 Public Library of Science ;2023 The PLOS ONE Editors. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2023 The PLOS ONE Editors 2023 The PLOS ONE Editors ;2023 The PLOS ONE Editors. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0283918 ;PMID: 37075011

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11
Molecular mechanisms of transgenerational epigenetic inheritance
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Article
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Molecular mechanisms of transgenerational epigenetic inheritance

Nature reviews. Genetics, 2022-06, Vol.23 (6), p.325-341 [Peer Reviewed Journal]

2022. Springer Nature Limited. ;Springer Nature Limited 2022. ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1471-0056 ;EISSN: 1471-0064 ;DOI: 10.1038/s41576-021-00438-5 ;PMID: 34983971

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12
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
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Article
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Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

Nature biotechnology, 2019-10, Vol.37 (10), p.1155-1162 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;COPYRIGHT 2019 Nature Publishing Group ;Copyright Nature Publishing Group Oct 2019 ;ISSN: 1087-0156 ;EISSN: 1546-1696 ;DOI: 10.1038/s41587-019-0217-9 ;PMID: 31406327

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13
Corrigendum: Discovery and genotyping of structural variation from long-read haploid genome sequence data
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Article
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Corrigendum: Discovery and genotyping of structural variation from long-read haploid genome sequence data

Genome research, 2018-01, Vol.28 (1), p.144-144 [Peer Reviewed Journal]

Copyright Cold Spring Harbor Laboratory Press Jan 2018 ;2018 ;ISSN: 1088-9051 ;EISSN: 1549-5469 ;DOI: 10.1101/gr.233007.117 ;PMID: 29295848

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14
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
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Article
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MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

Briefings in bioinformatics, 2019-07, Vol.20 (4), p.1160-1166 [Peer Reviewed Journal]

The Author 2017. Published by Oxford University Press. 2017 ;The Author 2017. Published by Oxford University Press. ;ISSN: 1467-5463 ;EISSN: 1477-4054 ;DOI: 10.1093/bib/bbx108 ;PMID: 28968734

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15
Correction to: Sequence and structural variation in the genome of the Biomphalaria glabrata embryonic (Bge) cell line
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Article
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Correction to: Sequence and structural variation in the genome of the Biomphalaria glabrata embryonic (Bge) cell line

Parasites & vectors, 2018-10, Vol.11 (1), p.566-566, Article 566 [Peer Reviewed Journal]

Copyright © 2018. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s). 2018 ;ISSN: 1756-3305 ;EISSN: 1756-3305 ;DOI: 10.1186/s13071-018-3135-7 ;PMID: 30373629

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16
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing
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Article
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High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

Nature methods, 2021-02, Vol.18 (2), p.165-169 [Peer Reviewed Journal]

COPYRIGHT 2021 Nature Publishing Group ;The Author(s), under exclusive licence to Springer Nature America, Inc. 2021. ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-020-01041-y ;PMID: 33432244

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17
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
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Article
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Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

Nature biotechnology, 2019-08, Vol.37 (8), p.907-915 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;COPYRIGHT 2019 Nature Publishing Group ;Copyright Nature Publishing Group Aug 2019 ;ISSN: 1087-0156 ;EISSN: 1546-1696 ;DOI: 10.1038/s41587-019-0201-4 ;PMID: 31375807

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18
A draft human pangenome reference
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Article
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A draft human pangenome reference

Nature (London), 2023-05, Vol.617 (7960), p.312-324 [Peer Reviewed Journal]

2023. The Author(s). ;Copyright Nature Publishing Group May 11, 2023 ;The Author(s) 2023 ;ISSN: 0028-0836 ;EISSN: 1476-4687 ;DOI: 10.1038/s41586-023-05896-x ;PMID: 37165242

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19
CRISPResso2 provides accurate and rapid genome editing sequence analysis
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Article
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CRISPResso2 provides accurate and rapid genome editing sequence analysis

Nature biotechnology, 2019-03, Vol.37 (3), p.224-226 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;2019© The Author(s), under exclusive licence to Springer Nature America, Inc. 2019 ;ISSN: 1087-0156 ;EISSN: 1546-1696 ;DOI: 10.1038/s41587-019-0032-3 ;PMID: 30809026

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20
Assembly of a pan-genome from deep sequencing of 910 humans of African descent
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Article
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Assembly of a pan-genome from deep sequencing of 910 humans of African descent

Nature genetics, 2019-01, Vol.51 (1), p.30-35 [Peer Reviewed Journal]

Copyright Nature Publishing Group Jan 2019 ;ISSN: 1061-4036 ;EISSN: 1546-1718 ;DOI: 10.1038/s41588-018-0273-y ;PMID: 30455414

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