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1
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
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GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

Bioinformatics, 2019-11, Vol.36 (6), p.1925-1927 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz848 ;PMID: 31730192

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2
GTDB-Tk v2: memory friendly classification with the genome taxonomy database
GTDB-Tk v2: memory friendly classification with the genome taxonomy database
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GTDB-Tk v2: memory friendly classification with the genome taxonomy database

Bioinformatics (Oxford, England), 2022-11, Vol.38 (23), p.5315-5316 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press. ;The Author(s) 2022. Published by Oxford University Press. 2022 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btac672 ;PMID: 36218463

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3
GraphDTA: predicting drug–target binding affinity with graph neural networks
GraphDTA: predicting drug–target binding affinity with graph neural networks
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GraphDTA: predicting drug–target binding affinity with graph neural networks

Bioinformatics, 2021-05, Vol.37 (8), p.1140-1147 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2020 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa921

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4
User involvement in digital health: Working together to design smart home health technology
User involvement in digital health: Working together to design smart home health technology
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User involvement in digital health: Working together to design smart home health technology

Health expectations : an international journal of public participation in health care and health policy, 2019-02, Vol.22 (1), p.65-73 [Peer Reviewed Journal]

2018 The Authors. published by John Wiley & Sons Ltd. ;2018 The Authors. Health Expectations published by John Wiley & Sons Ltd. ;COPYRIGHT 2018 John Wiley & Sons, Inc. ;Copyright © 2019 John Wiley & Sons Ltd ;2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1369-6513 ;EISSN: 1369-7625 ;DOI: 10.1111/hex.12831 ;PMID: 30289590

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5
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

Bioinformatics, 2020-02, Vol.36 (4), p.1234-1240 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz682 ;PMID: 31501885

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6
Assessing the Potential of Wearable Health Monitors for Health System Strengthening in Low- and Middle-Income Countries: A Prospective Study of Technology Adoption in Cambodia
Assessing the Potential of Wearable Health Monitors for Health System Strengthening in Low- and Middle-Income Countries: A Prospective Study of Technology Adoption in Cambodia
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Assessing the Potential of Wearable Health Monitors for Health System Strengthening in Low- and Middle-Income Countries: A Prospective Study of Technology Adoption in Cambodia

Health policy and planning, 2022-09, Vol.37 (8), p.943-951 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press in association with The London School of Hygiene and Tropical Medicine. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;The Author(s) 2022. Published by Oxford University Press in association with The London School of Hygiene and Tropical Medicine. 2022 ;ISSN: 1460-2237 ;ISSN: 0268-1080 ;EISSN: 1460-2237 ;DOI: 10.1093/heapol/czac019 ;PMID: 35262172

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7
Graph embedding on biomedical networks: methods, applications and evaluations
Graph embedding on biomedical networks: methods, applications and evaluations
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Graph embedding on biomedical networks: methods, applications and evaluations

Bioinformatics, 2020-02, Vol.36 (4), p.1241-1251 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz718 ;PMID: 31584634

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8
Animal‐cell culture media: History, characteristics, and current issues
Animal‐cell culture media: History, characteristics, and current issues
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Animal‐cell culture media: History, characteristics, and current issues

Reproductive medicine and biology, 2017-04, Vol.16 (2), p.99-117 [Peer Reviewed Journal]

2017 The Authors. Reproductive Medicine and Biology published by John Wiley & Sons Australia, Ltd on behalf of Japan Society for Reproductive Medicine. ;2017. This work is published under http://creativecommons.org/licenses/by-nc/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1445-5781 ;EISSN: 1447-0578 ;DOI: 10.1002/rmb2.12024 ;PMID: 29259457

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9
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

Bioinformatics, 2019-11, Vol.35 (21), p.4453-4455 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz305 ;PMID: 31070718

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10
Improving the public health impact of eHealth and mHealth interventions
Improving the public health impact of eHealth and mHealth interventions
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Improving the public health impact of eHealth and mHealth interventions

Australian and New Zealand journal of public health, 2018-04, Vol.42 (2), p.118-119 [Peer Reviewed Journal]

2017 Copyright 2017 THE AUTHORS. ;2017 The Authors ;2018. This work is published under http://creativecommons.org/licenses/by-nc-nd/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1326-0200 ;EISSN: 1753-6405 ;DOI: 10.1111/1753-6405.12771 ;PMID: 29384248

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11
Scaling tree-based automated machine learning to biomedical big data with a feature set selector
Scaling tree-based automated machine learning to biomedical big data with a feature set selector
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Scaling tree-based automated machine learning to biomedical big data with a feature set selector

Bioinformatics, 2020-01, Vol.36 (1), p.250-256 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz470 ;PMID: 31165141

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12
fastp: an ultra-fast all-in-one FASTQ preprocessor
fastp: an ultra-fast all-in-one FASTQ preprocessor
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fastp: an ultra-fast all-in-one FASTQ preprocessor

Bioinformatics, 2018-09, Vol.34 (17), p.i884-i890 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty560 ;PMID: 30423086

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13
Minimap2: pairwise alignment for nucleotide sequences
Minimap2: pairwise alignment for nucleotide sequences
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Minimap2: pairwise alignment for nucleotide sequences

Bioinformatics, 2018-09, Vol.34 (18), p.3094-3100 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty191 ;PMID: 29750242

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14
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
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ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

Bioinformatics, 2019-02, Vol.35 (3), p.526-528 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2018 ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty633 ;PMID: 30016406

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15
TISIDB: an integrated repository portal for tumor–immune system interactions
TISIDB: an integrated repository portal for tumor–immune system interactions
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TISIDB: an integrated repository portal for tumor–immune system interactions

Bioinformatics, 2019-10, Vol.35 (20), p.4200-4202 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2019 ;The Author(s) (2019). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz210 ;PMID: 30903160

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16
Compound-protein interaction prediction with end-to-end learning of neural networks for graphs and sequences
Compound-protein interaction prediction with end-to-end learning of neural networks for graphs and sequences
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Compound-protein interaction prediction with end-to-end learning of neural networks for graphs and sequences

Bioinformatics, 2019-01, Vol.35 (2), p.309-318 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty535 ;PMID: 29982330

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17
ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes
ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes
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ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes

Bioinformatics, 2018-07, Vol.34 (13), p.2263-2270 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty053 ;PMID: 29408954

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18
Nextstrain: real-time tracking of pathogen evolution
Nextstrain: real-time tracking of pathogen evolution
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Nextstrain: real-time tracking of pathogen evolution

Bioinformatics, 2018-12, Vol.34 (23), p.4121-4123 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty407 ;PMID: 29790939

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19
Identifying and removing haplotypic duplication in primary genome assemblies
Identifying and removing haplotypic duplication in primary genome assemblies
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Identifying and removing haplotypic duplication in primary genome assemblies

Bioinformatics, 2020-05, Vol.36 (9), p.2896-2898 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. 2020 ;The Author(s) 2020. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa025 ;PMID: 31971576

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20
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold
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KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold

Bioinformatics, 2020-04, Vol.36 (7), p.2251-2252 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz859 ;PMID: 31742321

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