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COVID-19 Docking Server: a meta server for docking small molecules, peptides and antibodies against potential targets of COVID-19
COVID-19 Docking Server: a meta server for docking small molecules, peptides and antibodies against potential targets of COVID-19
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COVID-19 Docking Server: a meta server for docking small molecules, peptides and antibodies against potential targets of COVID-19

Bioinformatics, 2020-12, Vol.36 (20), p.5109-5111 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2020 ;The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;2020. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;The Author(s) (2020). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2020 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa645 ;PMID: 32692801

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2
Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes
Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes
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Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes

Bioinformatics, 2020-06, Vol.36 (11), p.3552-3555 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. 2020 ;The Author(s) 2020. Published by Oxford University Press. ;2020. This work is licensed under http://creativecommons.org/licenses/by-nc/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa145 ;PMID: 32108862

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3
Cellinker: a platform of ligand–receptor interactions for intercellular communication analysis
Cellinker: a platform of ligand–receptor interactions for intercellular communication analysis
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Cellinker: a platform of ligand–receptor interactions for intercellular communication analysis

Bioinformatics, 2021-01, Vol.37 (14), p.2025-2032 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2021 ;The Author(s) (2021). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;2021. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab036 ;PMID: 33471060

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4
SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation
SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation
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SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation

Bioinformatics, 2019-02, Vol.35 (3), p.462-469 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. 2018 ;2018. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Attribution-NonCommercial-NoDerivs 4.0 Spain info:eu-repo/semantics/openAccess http://creativecommons.org/licenses/by-nc-nd/4.0/es/ ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty635 ;PMID: 30020414

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5
COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology
COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology
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COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology

Bioinformatics, 2021-06, Vol.37 (9), p.1332-1334 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. 2020 ;The Author(s) 2020. Published by Oxford University Press. ;2020. This work is licensed under http://creativecommons.org/licenses/by-nc/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa834 ;PMID: 32976572

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6
Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection
Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection
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Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection

Bioinformatics, 2014-02, Vol.30 (4), p.472-479 [Peer Reviewed Journal]

2013. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;The Author 2013. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2013 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btt709 ;PMID: 24318998

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7
Potential covalent drugs targeting the main protease of the SARS-CoV-2 coronavirus
Potential covalent drugs targeting the main protease of the SARS-CoV-2 coronavirus
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Potential covalent drugs targeting the main protease of the SARS-CoV-2 coronavirus

Bioinformatics, 2020-06, Vol.36 (11), p.3295-3298 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2020 ;The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;2020. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;The Author(s) (2020). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2020 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa224 ;PMID: 32239142

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8
The COVID-19 Ontology
The COVID-19 Ontology
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The COVID-19 Ontology

Bioinformatics, 2021-04, Vol.36 (24), p.5703-5705 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. 2020 ;The Author(s) 2020. Published by Oxford University Press. ;2020. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa1057 ;PMID: 33346828

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9
COVID-2019-associated overexpressed Prevotella proteins mediated host–pathogen interactions and their role in coronavirus outbreak
COVID-2019-associated overexpressed Prevotella proteins mediated host–pathogen interactions and their role in coronavirus outbreak
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COVID-2019-associated overexpressed Prevotella proteins mediated host–pathogen interactions and their role in coronavirus outbreak

Bioinformatics, 2020-07, Vol.36 (13), p.4065-4069 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2020 ;The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;2020. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;The Author(s) (2020). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2020 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa285 ;PMID: 32374823

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10
coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies
coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies
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coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies

Bioinformatics, 2021-12, Vol.38 (1), p.1-8 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2021 ;The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;2021. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab597 ;PMID: 34406356

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11
Structural basis of SARS-CoV-2 spike protein induced by ACE2
Structural basis of SARS-CoV-2 spike protein induced by ACE2
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Structural basis of SARS-CoV-2 spike protein induced by ACE2

Bioinformatics, 2021-05, Vol.37 (7), p.929-936 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2020 ;The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;2020. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;The Author(s) (2020). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2020 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa744 ;PMID: 32818261

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12
VIDHOP, viral host prediction with deep learning
VIDHOP, viral host prediction with deep learning
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VIDHOP, viral host prediction with deep learning

Bioinformatics, 2021-04, Vol.37 (3), p.318-325 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;2020. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;The Author(s) (2020). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2020 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa705 ;PMID: 32777818

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13
Novel SARS-CoV-2 encoded small RNAs in the passage to humans
Novel SARS-CoV-2 encoded small RNAs in the passage to humans
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Novel SARS-CoV-2 encoded small RNAs in the passage to humans

Bioinformatics, 2021-04, Vol.36 (24), p.5571-5581 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2020 ;The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;2020. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;The Author(s) (2020). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2020 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa1002 ;PMID: 33244583

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14
COVID-19 Knowledge Graph from semantic integration of biomedical literature and databases
COVID-19 Knowledge Graph from semantic integration of biomedical literature and databases
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COVID-19 Knowledge Graph from semantic integration of biomedical literature and databases

Bioinformatics, 2021-12, Vol.37 (23), p.4597-4598 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2021 ;The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;2021. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab694 ;PMID: 34613368

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15
FBA reveals guanylate kinase as a potential target for antiviral therapies against SARS-CoV-2
FBA reveals guanylate kinase as a potential target for antiviral therapies against SARS-CoV-2
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FBA reveals guanylate kinase as a potential target for antiviral therapies against SARS-CoV-2

Bioinformatics, 2020-12, Vol.36 (Supplement_2), p.i813-i821 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. 2020 ;The Author(s) 2020. Published by Oxford University Press. ;2020. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa813 ;PMID: 33381848

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16
CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes
CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes
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CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes

Bioinformatics, 2021-04, Vol.36 (22-23), p.5522-5523 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2020 ;The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;2020. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa1047 ;PMID: 33346830

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17
Differentially conserved amino acid positions may reflect differences in SARS-CoV-2 and SARS-CoV behaviour
Differentially conserved amino acid positions may reflect differences in SARS-CoV-2 and SARS-CoV behaviour
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Differentially conserved amino acid positions may reflect differences in SARS-CoV-2 and SARS-CoV behaviour

Bioinformatics, 2021-08, Vol.37 (16), p.2282-2288 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press. 2021 ;The Author(s) 2021. Published by Oxford University Press. ;2021. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab094 ;PMID: 33560365

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18
Publishing and peer reviewing as indicators of the impact of COVID-19 on the productivity of the aquatic science community
Publishing and peer reviewing as indicators of the impact of COVID-19 on the productivity of the aquatic science community
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Publishing and peer reviewing as indicators of the impact of COVID-19 on the productivity of the aquatic science community

ICES Journal of Marine Science, 2020-12, Vol.77 (7-8), p.2439-2444 [Peer Reviewed Journal]

International Council for the Exploration of the Sea 2020. All rights reserved. For permissions, please email: journals.permissions@oup.com 2020 ;2020. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;ISSN: 1095-9289 ;ISSN: 1054-3139 ;EISSN: 1095-9289 ;DOI: 10.1093/icesjms/fsaa151

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19
Accurate prediction of human essential genes using only nucleotide composition and association information
Accurate prediction of human essential genes using only nucleotide composition and association information
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Accurate prediction of human essential genes using only nucleotide composition and association information

Bioinformatics, 2017-06, Vol.33 (12), p.1758-1764 [Peer Reviewed Journal]

The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com ;2017. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2017 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btx055 ;PMID: 28158612

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20
SARS2020: an integrated platform for identification of novel coronavirus by a consensus sequence-function model
SARS2020: an integrated platform for identification of novel coronavirus by a consensus sequence-function model
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SARS2020: an integrated platform for identification of novel coronavirus by a consensus sequence-function model

Bioinformatics, 2021-05, Vol.37 (8), p.1182-1183 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2020 ;2020. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the associated terms available at https://academic.oup.com/journals/pages/coronavirus . ;The Author(s) (2020). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2020 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa767 ;PMID: 32871007

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