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1
Hepatocellular carcinoma: ESMO Clinical Practice Guidelines for diagnosis, treatment and follow-up
Hepatocellular carcinoma: ESMO Clinical Practice Guidelines for diagnosis, treatment and follow-up
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Hepatocellular carcinoma: ESMO Clinical Practice Guidelines for diagnosis, treatment and follow-up

Annals of oncology, 2018-10, Vol.29 (Supplement_4), p.iv238-iv255 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press on behalf of the European Society for Medical Oncology. All rights reserved. For permissions, please email: journals.permissions@oup.com. 2018 ;ISSN: 0923-7534 ;EISSN: 1569-8041 ;DOI: 10.1093/annonc/mdy308 ;PMID: 30285213

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2
The emerging landscape of single-molecule protein sequencing technologies
The emerging landscape of single-molecule protein sequencing technologies
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The emerging landscape of single-molecule protein sequencing technologies

Nature methods, 2021-06, Vol.18 (6), p.604-617 [Peer Reviewed Journal]

COPYRIGHT 2021 Nature Publishing Group ;Springer Nature America, Inc. 2021. ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-021-01143-1 ;PMID: 34099939

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3
High-resolution 3D imaging of fixed and cleared organoids
High-resolution 3D imaging of fixed and cleared organoids
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High-resolution 3D imaging of fixed and cleared organoids

Nature protocols, 2019-06, Vol.14 (6), p.1756-1771 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;The Author(s), under exclusive licence to Springer Nature Limited 2019. ;ISSN: 1754-2189 ;EISSN: 1750-2799 ;DOI: 10.1038/s41596-019-0160-8 ;PMID: 31053799

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4
Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping
Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping
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Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping

Nature protocols, 2015-11, Vol.10 (11), p.1860-1896 [Peer Reviewed Journal]

COPYRIGHT 2015 Nature Publishing Group ;COPYRIGHT 2015 Nature Publishing Group ;Copyright Nature Publishing Group Nov 2015 ;Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. 2015. ;ISSN: 1754-2189 ;EISSN: 1750-2799 ;DOI: 10.1038/nprot.2015.122 ;PMID: 26492141

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5
Phosphorylation of Neurogenin2 Specifies the Migration Properties and the Dendritic Morphology of Pyramidal Neurons in the Neocortex
Phosphorylation of Neurogenin2 Specifies the Migration Properties and the Dendritic Morphology of Pyramidal Neurons in the Neocortex
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Phosphorylation of Neurogenin2 Specifies the Migration Properties and the Dendritic Morphology of Pyramidal Neurons in the Neocortex

Neuron (Cambridge, Mass.), 2005-10, Vol.48 (1), p.45-62 [Peer Reviewed Journal]

2005 Elsevier Inc. ;2005. Elsevier Inc. ;ISSN: 0896-6273 ;ISSN: 1097-4199 ;EISSN: 1097-4199 ;DOI: 10.1016/j.neuron.2005.08.032 ;PMID: 16202708

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6
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

PLoS computational biology, 2017-06, Vol.13 (6), p.e1005595-e1005595 [Peer Reviewed Journal]

COPYRIGHT 2017 Public Library of Science ;COPYRIGHT 2017 Public Library of Science ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Wick RR, Judd LM, Gorrie CL, Holt KE (2017) Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. PLoS Comput Biol 13(6): e1005595. https://doi.org/10.1371/journal.pcbi.1005595 ;2017 Wick et al 2017 Wick et al ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Wick RR, Judd LM, Gorrie CL, Holt KE (2017) Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. PLoS Comput Biol 13(6): e1005595. https://doi.org/10.1371/journal.pcbi.1005595 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005595 ;PMID: 28594827

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7
Systematic evaluation of spliced alignment programs for RNA-seq data
Systematic evaluation of spliced alignment programs for RNA-seq data
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Systematic evaluation of spliced alignment programs for RNA-seq data

Nature methods, 2013-12, Vol.10 (12), p.1185-1191 [Peer Reviewed Journal]

COPYRIGHT 2013 Nature Publishing Group ;Copyright Nature Publishing Group Dec 2013 ;info:eu-repo/semantics/openAccess © 2013 Nature America, Inc. All rights reserved. This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ http://creativecommons.org/licenses/by-nc-sa/3.0/ ;Distributed under a Creative Commons Attribution 4.0 International License ;The Author(s) 2013 ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/nmeth.2722 ;PMID: 24185836

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8
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
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A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Nature medicine, 2020-05, Vol.26 (5), p.792-802 [Peer Reviewed Journal]

COPYRIGHT 2020 Nature Publishing Group ;COPYRIGHT 2020 Nature Publishing Group ;The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2020 ;ISSN: 1078-8956 ;EISSN: 1546-170X ;DOI: 10.1038/s41591-020-0844-1 ;PMID: 32405060

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9
Soft tissue and visceral sarcomas: ESMO-EURACAN Clinical Practice Guidelines for diagnosis, treatment and follow-up
Soft tissue and visceral sarcomas: ESMO-EURACAN Clinical Practice Guidelines for diagnosis, treatment and follow-up
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Soft tissue and visceral sarcomas: ESMO-EURACAN Clinical Practice Guidelines for diagnosis, treatment and follow-up

Annals of oncology, 2018-10, Vol.29 (Supplement_4), p.iv51-iv67 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press on behalf of the European Society for Medical Oncology. All rights reserved. For permissions, please email: journals.permissions@oup.com. 2018 ;ISSN: 0923-7534 ;EISSN: 1569-8041 ;DOI: 10.1093/annonc/mdy096 ;PMID: 29846498

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10
MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites
MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites
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MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites

PloS one, 2017-09, Vol.12 (9), p.e0184661-e0184661 [Peer Reviewed Journal]

COPYRIGHT 2017 Public Library of Science ;COPYRIGHT 2017 Public Library of Science ;2017 Esteban et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2017 Esteban et al 2017 Esteban et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0184661 ;PMID: 28945803

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11
CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics
CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics
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CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics

Nucleic acids research, 2021-01, Vol.49 (D1), p.D1083-D1093 [Peer Reviewed Journal]

Published by Oxford University Press on behalf of Nucleic Acids Research 2020. 2021 ;Published by Oxford University Press on behalf of Nucleic Acids Research 2020. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkaa968 ;PMID: 33196823

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12
Benchmarking atlas-level data integration in single-cell genomics
Benchmarking atlas-level data integration in single-cell genomics
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Benchmarking atlas-level data integration in single-cell genomics

Nature methods, 2022-01, Vol.19 (1), p.41-50 [Peer Reviewed Journal]

2021. The Author(s). ;The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2021 ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-021-01336-8 ;PMID: 34949812

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13
DeLTA: Automated cell segmentation, tracking, and lineage reconstruction using deep learning
DeLTA: Automated cell segmentation, tracking, and lineage reconstruction using deep learning
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DeLTA: Automated cell segmentation, tracking, and lineage reconstruction using deep learning

PLoS computational biology, 2020-04, Vol.16 (4), p.e1007673-e1007673 [Peer Reviewed Journal]

COPYRIGHT 2020 Public Library of Science ;COPYRIGHT 2020 Public Library of Science ;2020 Lugagne et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2020 Lugagne et al 2020 Lugagne et al ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1007673 ;PMID: 32282792

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14
Staged multidisciplinary step-up management for necrotizing pancreatitis
Staged multidisciplinary step-up management for necrotizing pancreatitis
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Staged multidisciplinary step-up management for necrotizing pancreatitis

British journal of surgery, 2014-01, Vol.101 (1), p.e65-e79 [Peer Reviewed Journal]

2013 BJS Society Ltd. Published by John Wiley & Sons Ltd ;2013 BJS Society Ltd. Published by John Wiley & Sons Ltd. ;ISSN: 0007-1323 ;EISSN: 1365-2168 ;DOI: 10.1002/bjs.9346 ;PMID: 24272964 ;CODEN: BJSUAM

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15
Recommendations for the imaging assessment of prosthetic heart valves: a report from the European Association of Cardiovascular Imaging endorsed by the Chinese Society of Echocardiography, the Inter-American Society of Echocardiography, and the Brazilian Department of Cardiovascular Imaging
Recommendations for the imaging assessment of prosthetic heart valves: a report from the European Association of Cardiovascular Imaging endorsed by the Chinese Society of Echocardiography, the Inter-American Society of Echocardiography, and the Brazilian Department of Cardiovascular Imaging
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Recommendations for the imaging assessment of prosthetic heart valves: a report from the European Association of Cardiovascular Imaging endorsed by the Chinese Society of Echocardiography, the Inter-American Society of Echocardiography, and the Brazilian Department of Cardiovascular Imaging

European heart journal cardiovascular imaging, 2016-06, Vol.17 (6), p.589-590 [Peer Reviewed Journal]

Published on behalf of the European Society of Cardiology. All rights reserved. © The Author 2016. For permissions please email: journals.permissions@oup.com. ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 2047-2404 ;ISSN: 2047-2412 ;EISSN: 2047-2412 ;DOI: 10.1093/ehjci/jew025 ;PMID: 27143783

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16
Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research
Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research
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Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research

Nature methods, 2021-07, Vol.18 (7), p.733-746 [Peer Reviewed Journal]

COPYRIGHT 2021 Nature Publishing Group ;The Author(s), under exclusive licence to Springer Nature America, Inc. 2021. ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-021-01116-4 ;PMID: 33972782

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17
Non-parametric combination and related permutation tests for neuroimaging
Non-parametric combination and related permutation tests for neuroimaging
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Non-parametric combination and related permutation tests for neuroimaging

Human brain mapping, 2016-04, Vol.37 (4), p.1486-1511 [Peer Reviewed Journal]

2016 The Authors Human Brain Mapping Published by Wiley Periodicals, Inc. ;2016 Wiley Periodicals, Inc. ;ISSN: 1065-9471 ;ISSN: 1097-0193 ;EISSN: 1097-0193 ;DOI: 10.1002/hbm.23115 ;PMID: 26848101

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18
Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data
Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data
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Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data

Nature protocols, 2021-01, Vol.16 (1), p.1-9 [Peer Reviewed Journal]

COPYRIGHT 2021 Nature Publishing Group ;The Author(s), under exclusive licence to Springer Nature Limited 2020. ;ISSN: 1754-2189 ;EISSN: 1750-2799 ;DOI: 10.1038/s41596-020-00409-w ;PMID: 33288955

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19
Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments
Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments
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Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments

PLoS computational biology, 2016-11, Vol.12 (11), p.e1005177-e1005177 [Peer Reviewed Journal]

COPYRIGHT 2016 Public Library of Science ;COPYRIGHT 2016 Public Library of Science ;2016 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Van Valen DA, Kudo T, Lane KM, Macklin DN, Quach NT, DeFelice MM, et al. (2016) Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments. PLoS Comput Biol 12(11): e1005177. doi:10.1371/journal.pcbi.1005177 ;2016 Van Valen et al 2016 Van Valen et al ;2016 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Van Valen DA, Kudo T, Lane KM, Macklin DN, Quach NT, DeFelice MM, et al. (2016) Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments. PLoS Comput Biol 12(11): e1005177. doi:10.1371/journal.pcbi.1005177 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005177 ;PMID: 27814364

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20
Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons
Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons
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Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons

Nature protocols, 2016-03, Vol.11 (3), p.499-524 [Peer Reviewed Journal]

COPYRIGHT 2016 Nature Publishing Group ;COPYRIGHT 2016 Nature Publishing Group ;Copyright Nature Publishing Group Mar 2016 ;Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. 2016. ;ISSN: 1754-2189 ;EISSN: 1750-2799 ;DOI: 10.1038/nprot.2016.015 ;PMID: 26890679

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