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Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regressionGenome Biology, 2019-12, Vol.20 (1), p.296-296, Article 296 [Peer Reviewed Journal]2019. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-019-1874-1 ;PMID: 31870423Full text available |
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Developmental diversification of cortical inhibitory interneuronsNature (London), 2018-03, Vol.555 (7697), p.457-462 [Peer Reviewed Journal]COPYRIGHT 2018 Nature Publishing Group ;COPYRIGHT 2018 Nature Publishing Group ;Copyright Nature Publishing Group Mar 22, 2018 ;ISSN: 0028-0836 ;EISSN: 1476-4687 ;DOI: 10.1038/nature25999 ;PMID: 29513653Full text available |
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Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysisNature communications, 2020-10, Vol.11 (1), p.5504-5504, Article 5504 [Peer Reviewed Journal]The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2020 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-020-19365-w ;PMID: 33127880Full text available |
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Multiple abiotic stimuli are integrated in the regulation of rice gene expression under field conditionseLife, 2015-11, Vol.4 [Peer Reviewed Journal]2015, Plessis et al. This work is licensed under the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2015, Plessis et al 2015 Plessis et al ;ISSN: 2050-084X ;EISSN: 2050-084X ;DOI: 10.7554/elife.08411 ;PMID: 26609814Full text available |
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Inference of Bacterial Small RNA Regulatory Networks and Integration with Transcription Factor-Driven Regulatory NetworksmSystems, 2020-06, Vol.5 (3) [Peer Reviewed Journal]Copyright © 2020 Arrieta-Ortiz et al. ;Copyright © 2020 Arrieta-Ortiz et al. 2020 Arrieta-Ortiz et al. ;ISSN: 2379-5077 ;EISSN: 2379-5077 ;DOI: 10.1128/mSystems.00057-20 ;PMID: 32487739Full text available |
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Identification of global alteration of translational regulation in glioma in vivoPloS one, 2012-10, Vol.7 (10), p.e46965 [Peer Reviewed Journal]COPYRIGHT 2012 Public Library of Science ;COPYRIGHT 2012 Public Library of Science ;Helmy et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2012 Helmy et al 2012 Helmy et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0046965 ;PMID: 23056544Full text available |
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Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics dataLife science alliance, 2020-11, Vol.3 (11), p.e202000867 [Peer Reviewed Journal]2020 Tanevski et al. ;2020 Tanevski et al. 2020 ;ISSN: 2575-1077 ;EISSN: 2575-1077 ;DOI: 10.26508/lsa.202000867 ;PMID: 32972997Full text available |
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Comprehensive Integration of Single-Cell DataCell, 2019-06, Vol.177 (7), p.1888-1902.e21 [Peer Reviewed Journal]2019 Elsevier Inc. ;Copyright © 2019 Elsevier Inc. All rights reserved. ;ISSN: 0092-8674 ;EISSN: 1097-4172 ;DOI: 10.1016/j.cell.2019.05.031 ;PMID: 31178118Full text available |
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Material Type: Article
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Robust data-driven incorporation of prior knowledge into the inference of dynamic regulatory networksBioinformatics, 2013-04, Vol.29 (8), p.1060-1067 [Peer Reviewed Journal]The Author 2013. Published by Oxford University Press. 2013 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btt099 ;PMID: 23525069Full text available |
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Simultaneous epitope and transcriptome measurement in single cellsNature methods, 2017-09, Vol.14 (9), p.865-868 [Peer Reviewed Journal]COPYRIGHT 2017 Nature Publishing Group ;Copyright Nature Publishing Group Sep 2017 ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/nmeth.4380 ;PMID: 28759029Full text available |
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EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function in the Response to Water Deficit, High Temperature, and Agricultural EnvironmentsThe Plant cell, 2016-10, Vol.28 (10), p.2365-2384 [Peer Reviewed Journal]2016 American Society of Plant Biologists ;2016 American Society of Plant Biologists. All rights reserved. ;2016 American Society of Plant Biologists. All rights reserved. 2016 ;ISSN: 1040-4651 ;EISSN: 1532-298X ;DOI: 10.1105/tpc.16.00158 ;PMID: 27655842Full text available |
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An experimentally supported model of the Bacillus subtilis global transcriptional regulatory networkMolecular systems biology, 2015-11, Vol.11 (11), p.839-n/a [Peer Reviewed Journal]2015 The Authors. Published under the terms of the CC BY 4.0 license ;2015 The Authors. Published under the terms of the CC BY 4.0 license. ;2015 EMBO ;2015. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1744-4292 ;EISSN: 1744-4292 ;DOI: 10.15252/msb.20156236 ;PMID: 26577401Full text available |
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Material Type: Article
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Biallelic NFATC1 mutations cause an inborn error of immunity with impaired CD8+ T-cell function and perturbed glycolysisBlood, 2023-08, Vol.142 (9), p.827-845 [Peer Reviewed Journal]2023 The American Society of Hematology ;2023 by The American Society of Hematology. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 0006-4971 ;EISSN: 1528-0020 ;DOI: 10.1182/blood.2022018303 ;PMID: 37249233Full text available |
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Material Type: Article
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A human neural crest model reveals the developmental impact of neuroblastoma-associated chromosomal aberrationsNature communications, 2024-05, Vol.15 (1), p.3745-3745 [Peer Reviewed Journal]2024. The Author(s). ;The Author(s) 2024. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-024-47945-7 ;PMID: 38702304Full text available |
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Material Type: Article
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Large-scale simultaneous measurement of epitopes and transcriptomes in single cellsNature methods, 2017-07, Vol.14 (9), p.865-868 [Peer Reviewed Journal]ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/nmeth.4380 ;PMID: 28759029Full text available |
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Inter-species pathway perturbation prediction via data-driven detection of functional homologyBioinformatics (Oxford, England), 2015-02, Vol.31 (4), p.501-508 [Peer Reviewed Journal]Published by Oxford University Press 2014. This work is written by US Government employees and is in the public domain in the US. ;Published by Oxford University Press 2014. This work is written by US Government employees and is in the public domain in the US. 2014 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btu570 ;PMID: 25150249Full text available |
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Material Type: Article
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Constrained mixture estimation for analysis and robust classification of clinical time seriesBioinformatics, 2009-06, Vol.25 (12), p.i6-i14 [Peer Reviewed Journal]2009 The Author(s) 2009 ;ISSN: 1367-4803 ;ISSN: 1367-4811 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btp222 ;PMID: 19478017 ;CODEN: BOINFPFull text available |
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Material Type: Article
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Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functionsBioinformatics, 2011-04, Vol.27 (7), p.946-952 [Peer Reviewed Journal]2015 INIST-CNRS ;ISSN: 1367-4803 ;ISSN: 1367-4811 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btr037 ;PMID: 21266444Full text available |
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Material Type: Article
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Abstract 3542: A stem cell model dissects detrimental effects of neuroblastoma-linked chromosomal aberrations on cell differentiation during neural crest developmentCancer research (Chicago, Ill.), 2023-04, Vol.83 (7_Supplement), p.3542-3542 [Peer Reviewed Journal]ISSN: 1538-7445 ;EISSN: 1538-7445 ;DOI: 10.1158/1538-7445.AM2023-3542Full text available |
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Material Type: Article
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Inferring differentiation pathways from gene expressionBioinformatics, 2008-07, Vol.24 (13), p.i156-i164 [Peer Reviewed Journal]2008 The Author(s) 2008 ;ISSN: 1367-4803 ;ISSN: 1367-4811 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btn153 ;PMID: 18586709 ;CODEN: BOINFPFull text available |