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1
SymPy: symbolic computing in Python
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SymPy: symbolic computing in Python

PeerJ. Computer science, 2017-01, Vol.3, p.e103, Article e103 [Peer Reviewed Journal]

COPYRIGHT 2017 PeerJ. Ltd. ;2017 Meurer et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 2376-5992 ;EISSN: 2376-5992 ;DOI: 10.7717/peerj-cs.103

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2
Bracken: estimating species abundance in metagenomics data
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Bracken: estimating species abundance in metagenomics data

PeerJ. Computer science, 2017-01, Vol.3, p.e104, Article e104 [Peer Reviewed Journal]

COPYRIGHT 2017 PeerJ. Ltd. ;2017 Lu et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 2376-5992 ;EISSN: 2376-5992 ;DOI: 10.7717/peerj-cs.104

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3
Computational Tool to Design Small Synthetic Inhibitors Selective for XIAP-BIR3 Domain
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Computational Tool to Design Small Synthetic Inhibitors Selective for XIAP-BIR3 Domain

Molecules (Basel, Switzerland), 2023-07, Vol.28 (13) [Peer Reviewed Journal]

Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1420-3049 ;EISSN: 1420-3049 ;DOI: 10.3390/molecules28135155

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4
LM2K Model for Hosting a Based-Microservices Application in Multi-Cloud
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LM2K Model for Hosting a Based-Microservices Application in Multi-Cloud

Sensors (Basel, Switzerland), 2023 [Peer Reviewed Journal]

Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1424-8220 ;EISSN: 1424-8220

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5
Predicting judicial decisions of the European Court of Human Rights: a Natural Language Processing perspective
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Predicting judicial decisions of the European Court of Human Rights: a Natural Language Processing perspective

PeerJ. Computer science, 2016-10, Vol.2, p.e93, Article e93 [Peer Reviewed Journal]

COPYRIGHT 2016 PeerJ. Ltd. ;2016 Aletras etal. This is an open access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 2376-5992 ;EISSN: 2376-5992 ;DOI: 10.7717/peerj-cs.93

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6
Quantification of cell behaviors and computational modeling show that cell directional behaviors drive zebrafish pectoral fin morphogenesis
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Quantification of cell behaviors and computational modeling show that cell directional behaviors drive zebrafish pectoral fin morphogenesis

Bioinformatics (Oxford, England), 2021-09, Vol.37 (18), p.2946-2954 [Peer Reviewed Journal]

Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab201

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7
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

Bioinformatics, 2020-02, Vol.36 (4), p.1234-1240 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz682 ;PMID: 31501885

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8
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

Bioinformatics, 2019-11, Vol.35 (21), p.4453-4455 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz305 ;PMID: 31070718

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9
fastp: an ultra-fast all-in-one FASTQ preprocessor
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fastp: an ultra-fast all-in-one FASTQ preprocessor

Bioinformatics, 2018-09, Vol.34 (17), p.i884-i890 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty560 ;PMID: 30423086

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10
Minimap2: pairwise alignment for nucleotide sequences
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Minimap2: pairwise alignment for nucleotide sequences

Bioinformatics, 2018-09, Vol.34 (18), p.3094-3100 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty191 ;PMID: 29750242

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11
TISIDB: an integrated repository portal for tumor–immune system interactions
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TISIDB: an integrated repository portal for tumor–immune system interactions

Bioinformatics, 2019-10, Vol.35 (20), p.4200-4202 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2019 ;The Author(s) (2019). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz210 ;PMID: 30903160

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12
Nextstrain: real-time tracking of pathogen evolution
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Nextstrain: real-time tracking of pathogen evolution

Bioinformatics, 2018-12, Vol.34 (23), p.4121-4123 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty407 ;PMID: 29790939

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13
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold
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KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold

Bioinformatics, 2020-04, Vol.36 (7), p.2251-2252 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz859 ;PMID: 31742321

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14
VarSome: the human genomic variant search engine
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VarSome: the human genomic variant search engine

Bioinformatics (Oxford, England), 2019-06, Vol.35 (11), p.1978-1980 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. ;The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty897 ;PMID: 30376034

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15
clinker & clustermap.js: automatic generation of gene cluster comparison figures
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clinker & clustermap.js: automatic generation of gene cluster comparison figures

Bioinformatics (Oxford, England), 2021-08, Vol.37 (16), p.2473-2475 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2021 ;The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab007 ;PMID: 33459763

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16
Identifying and removing haplotypic duplication in primary genome assemblies
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Identifying and removing haplotypic duplication in primary genome assemblies

Bioinformatics, 2020-05, Vol.36 (9), p.2896-2898 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. 2020 ;The Author(s) 2020. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa025 ;PMID: 31971576

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17
NanoPack: visualizing and processing long-read sequencing data
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NanoPack: visualizing and processing long-read sequencing data

Bioinformatics, 2018-08, Vol.34 (15), p.2666-2669 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty149 ;PMID: 29547981

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18
Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences
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Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences

Bioinformatics (Oxford, England), 2019-06, Vol.35 (12), p.2084-2092 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. ;The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty895 ;PMID: 30395178

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19
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files
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PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files

Bioinformatics, 2019-05, Vol.35 (10), p.1786-1788 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2018 ;The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty875 ;PMID: 30321304

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20
Molecular representations in AI-driven drug discovery: a review and practical guide
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Molecular representations in AI-driven drug discovery: a review and practical guide

Journal of cheminformatics, 2020-09, Vol.12 (1), p.56-56, Article 56 [Peer Reviewed Journal]

The Author(s) 2020 ;COPYRIGHT 2020 BioMed Central Ltd. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-020-00460-5 ;PMID: 33431035

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