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1
SymPy: symbolic computing in Python
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SymPy: symbolic computing in Python

PeerJ. Computer science, 2017-01, Vol.3, p.e103, Article e103 [Peer Reviewed Journal]

COPYRIGHT 2017 PeerJ. Ltd. ;2017 Meurer et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 2376-5992 ;EISSN: 2376-5992 ;DOI: 10.7717/peerj-cs.103

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2
Bracken: estimating species abundance in metagenomics data
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Bracken: estimating species abundance in metagenomics data

PeerJ. Computer science, 2017-01, Vol.3, p.e104, Article e104 [Peer Reviewed Journal]

COPYRIGHT 2017 PeerJ. Ltd. ;2017 Lu et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 2376-5992 ;EISSN: 2376-5992 ;DOI: 10.7717/peerj-cs.104

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3
Predicting judicial decisions of the European Court of Human Rights: a Natural Language Processing perspective
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Predicting judicial decisions of the European Court of Human Rights: a Natural Language Processing perspective

PeerJ. Computer science, 2016-10, Vol.2, p.e93, Article e93 [Peer Reviewed Journal]

COPYRIGHT 2016 PeerJ. Ltd. ;2016 Aletras etal. This is an open access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 2376-5992 ;EISSN: 2376-5992 ;DOI: 10.7717/peerj-cs.93

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4
Computational Tool to Design Small Synthetic Inhibitors Selective for XIAP-BIR3 Domain
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Computational Tool to Design Small Synthetic Inhibitors Selective for XIAP-BIR3 Domain

Molecules (Basel, Switzerland), 2023-07, Vol.28 (13) [Peer Reviewed Journal]

Attribution ;ISSN: 1420-3049 ;EISSN: 1420-3049 ;DOI: 10.3390/molecules28135155

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5
Automatic Detection of Welding Defects using Deep Neural Network
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Automatic Detection of Welding Defects using Deep Neural Network

Journal of physics. Conference series, 2018-01, Vol.933 (1), p.12006 [Peer Reviewed Journal]

Published under licence by IOP Publishing Ltd ;2018. This work is published under http://creativecommons.org/licenses/by/3.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1742-6588 ;EISSN: 1742-6596 ;DOI: 10.1088/1742-6596/933/1/012006

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6
LM2K Model for Hosting a Based-Microservices Application in Multi-Cloud
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LM2K Model for Hosting a Based-Microservices Application in Multi-Cloud

Sensors (Basel, Switzerland), 2023 [Peer Reviewed Journal]

Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1424-8220 ;EISSN: 1424-8220

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7
Application of a Novel and Improved VGG-19 Network in the Detection of Workers Wearing Masks
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Application of a Novel and Improved VGG-19 Network in the Detection of Workers Wearing Masks

Journal of Physics: Conference Series, 2020-04, Vol.1518 (1), p.12041-012041 [Peer Reviewed Journal]

Published under licence by IOP Publishing Ltd ;2020. This work is published under http://creativecommons.org/licenses/by/3.0 (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Published under licence by IOP Publishing Ltd 2020 ;ISSN: 1742-6588 ;EISSN: 1742-6596 ;DOI: 10.1088/1742-6596/1518/1/012041 ;PMID: 34191934

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8
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

Bioinformatics, 2019-11, Vol.35 (21), p.4453-4455 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz305 ;PMID: 31070718

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9
fastp: an ultra-fast all-in-one FASTQ preprocessor
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fastp: an ultra-fast all-in-one FASTQ preprocessor

Bioinformatics, 2018-09, Vol.34 (17), p.i884-i890 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty560 ;PMID: 30423086

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10
Minimap2: pairwise alignment for nucleotide sequences
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Minimap2: pairwise alignment for nucleotide sequences

Bioinformatics, 2018-09, Vol.34 (18), p.3094-3100 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty191 ;PMID: 29750242

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11
Nextstrain: real-time tracking of pathogen evolution
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Nextstrain: real-time tracking of pathogen evolution

Bioinformatics, 2018-12, Vol.34 (23), p.4121-4123 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty407 ;PMID: 29790939

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12
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold
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KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold

Bioinformatics, 2020-04, Vol.36 (7), p.2251-2252 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz859 ;PMID: 31742321

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13
VarSome: the human genomic variant search engine
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VarSome: the human genomic variant search engine

Bioinformatics (Oxford, England), 2019-06, Vol.35 (11), p.1978-1980 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. ;The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty897 ;PMID: 30376034

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14
clinker & clustermap.js: automatic generation of gene cluster comparison figures
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clinker & clustermap.js: automatic generation of gene cluster comparison figures

Bioinformatics (Oxford, England), 2021-08, Vol.37 (16), p.2473-2475 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2021 ;The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab007 ;PMID: 33459763

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15
Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences
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Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences

Bioinformatics (Oxford, England), 2019-06, Vol.35 (12), p.2084-2092 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. ;The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty895 ;PMID: 30395178

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16
Molecular representations in AI-driven drug discovery: a review and practical guide
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Molecular representations in AI-driven drug discovery: a review and practical guide

Journal of cheminformatics, 2020-09, Vol.12 (1), p.56-56, Article 56 [Peer Reviewed Journal]

The Author(s) 2020 ;COPYRIGHT 2020 BioMed Central Ltd. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-020-00460-5 ;PMID: 33431035

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17
Could graph neural networks learn better molecular representation for drug discovery? A comparison study of descriptor-based and graph-based models
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Could graph neural networks learn better molecular representation for drug discovery? A comparison study of descriptor-based and graph-based models

Journal of cheminformatics, 2021-02, Vol.13 (1), p.12-12, Article 12 [Peer Reviewed Journal]

The Author(s) 2021 ;COPYRIGHT 2021 BioMed Central Ltd. ;The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-020-00479-8 ;PMID: 33597034

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18
Blockchain-Based Context-Aware Authorization Management as a Service in IoT
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Blockchain-Based Context-Aware Authorization Management as a Service in IoT

Sensors (Basel, Switzerland), 2021-11, Vol.21 (22) [Peer Reviewed Journal]

Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1424-8220 ;EISSN: 1424-8220 ;DOI: 10.3390/s21227656

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19
QMEANDisCo—distance constraints applied on model quality estimation
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QMEANDisCo—distance constraints applied on model quality estimation

Bioinformatics, 2020-03, Vol.36 (6), p.1765-1771 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz828 ;PMID: 31697312

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20
ipyrad: Interactive assembly and analysis of RADseq datasets
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ipyrad: Interactive assembly and analysis of RADseq datasets

Bioinformatics, 2020-04, Vol.36 (8), p.2592-2594 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2020 ;The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz966 ;PMID: 31904816

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