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1
Genome-wide Association Studies in Ancestrally Diverse Populations: Opportunities, Methods, Pitfalls, and Recommendations
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Genome-wide Association Studies in Ancestrally Diverse Populations: Opportunities, Methods, Pitfalls, and Recommendations

Cell, 2019-10, Vol.179 (3), p.589-603 [Peer Reviewed Journal]

2019 Elsevier Inc. ;Copyright © 2019 Elsevier Inc. All rights reserved. ;ISSN: 0092-8674 ;ISSN: 1097-4172 ;EISSN: 1097-4172 ;DOI: 10.1016/j.cell.2019.08.051 ;PMID: 31607513

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2
Genotyping‐by‐sequencing approaches to characterize crop genomes: choosing the right tool for the right application
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Genotyping‐by‐sequencing approaches to characterize crop genomes: choosing the right tool for the right application

Plant biotechnology journal, 2017-02, Vol.15 (2), p.149-161 [Peer Reviewed Journal]

2016 The Authors. published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd. ;2016 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd. ;COPYRIGHT 2017 John Wiley & Sons, Inc. ;2017 Society for Experimental Biology, Association of Applied Biologists and John Wiley & Sons Ltd ;2017. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1467-7644 ;EISSN: 1467-7652 ;DOI: 10.1111/pbi.12645 ;PMID: 27696619

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3
TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline
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TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline

PloS one, 2014-02, Vol.9 (2), p.e90346-e90346 [Peer Reviewed Journal]

COPYRIGHT 2014 Public Library of Science ;COPYRIGHT 2014 Public Library of Science ;2014. This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2014 ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0090346 ;PMID: 24587335

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4
FlashPCA2: principal component analysis of Biobank-scale genotype datasets
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FlashPCA2: principal component analysis of Biobank-scale genotype datasets

Bioinformatics (Oxford, England), 2017-09, Vol.33 (17), p.2776-2778 [Peer Reviewed Journal]

The Author (2017). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btx299 ;PMID: 28475694

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5
The genetic architecture of type 2 diabetes
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The genetic architecture of type 2 diabetes

Nature (London), 2016-08, Vol.536 (7614), p.41-47 [Peer Reviewed Journal]

COPYRIGHT 2016 Nature Publishing Group ;COPYRIGHT 2016 Nature Publishing Group ;Copyright Nature Publishing Group Aug 4, 2016 ;ISSN: 0028-0836 ;ISSN: 1476-4687 ;EISSN: 1476-4687 ;DOI: 10.1038/nature18642 ;PMID: 27398621 ;CODEN: NATUAS

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6
GraphTyper2 enables population-scale genotyping of structural variation using pangenome graphs
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GraphTyper2 enables population-scale genotyping of structural variation using pangenome graphs

Nature communications, 2019-11, Vol.10 (1), p.5402-8, Article 5402 [Peer Reviewed Journal]

2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-13341-9 ;PMID: 31776332

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7
Systematic comparison of variant calling pipelines using gold standard personal exome variants
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Systematic comparison of variant calling pipelines using gold standard personal exome variants

Scientific reports, 2015-12, Vol.5 (1), p.17875-17875, Article 17875 [Peer Reviewed Journal]

Copyright Nature Publishing Group Dec 2015 ;Copyright © 2015, Macmillan Publishers Limited 2015 Macmillan Publishers Limited ;ISSN: 2045-2322 ;EISSN: 2045-2322 ;DOI: 10.1038/srep17875 ;PMID: 26639839

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8
Upfront Genotyping of DPYD2A to Individualize Fluoropyrimidine Therapy: A Safety and Cost Analysis
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Upfront Genotyping of DPYD2A to Individualize Fluoropyrimidine Therapy: A Safety and Cost Analysis

Journal of clinical oncology, 2016-01, Vol.34 (3), p.227 [Peer Reviewed Journal]

2015 by American Society of Clinical Oncology. ;EISSN: 1527-7755 ;DOI: 10.1200/jco.2015.63.1325 ;PMID: 26573078

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9
Genotyping‐in‐Thousands by sequencing (GT‐seq): A cost effective SNP genotyping method based on custom amplicon sequencing
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Genotyping‐in‐Thousands by sequencing (GT‐seq): A cost effective SNP genotyping method based on custom amplicon sequencing

Molecular ecology resources, 2015-07, Vol.15 (4), p.855-867 [Peer Reviewed Journal]

2014 The Authors. Published by John Wiley & Sons Ltd. ;2014 The Authors. Molecular Ecology Resources Published by John Wiley & Sons Ltd. ;ISSN: 1755-098X ;EISSN: 1755-0998 ;DOI: 10.1111/1755-0998.12357 ;PMID: 25476721

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10
Clinical exome sequencing: results from 2819 samples reflecting 1000 families
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Clinical exome sequencing: results from 2819 samples reflecting 1000 families

European journal of human genetics : EJHG, 2017-02, Vol.25 (2), p.176-182 [Peer Reviewed Journal]

Copyright Nature Publishing Group Feb 2017 ;Copyright © 2017 The Author(s) 2017 The Author(s) ;ISSN: 1018-4813 ;EISSN: 1476-5438 ;DOI: 10.1038/ejhg.2016.146 ;PMID: 27848944

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11
A multi-task convolutional deep neural network for variant calling in single molecule sequencing
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A multi-task convolutional deep neural network for variant calling in single molecule sequencing

Nature communications, 2019-03, Vol.10 (1), p.998-11, Article 998 [Peer Reviewed Journal]

This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-09025-z ;PMID: 30824707

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12
Strategies for processing and quality control of Illumina genotyping arrays
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Strategies for processing and quality control of Illumina genotyping arrays

Briefings in bioinformatics, 2018-09, Vol.19 (5), p.765-775 [Peer Reviewed Journal]

The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2017 ;The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com ;ISSN: 1467-5463 ;EISSN: 1477-4054 ;DOI: 10.1093/bib/bbx012 ;PMID: 28334151

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13
An improved genotyping by sequencing (GBS) approach offering increased versatility and efficiency of SNP discovery and genotyping
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An improved genotyping by sequencing (GBS) approach offering increased versatility and efficiency of SNP discovery and genotyping

PloS one, 2013-01, Vol.8 (1), p.e54603-e54603 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;COPYRIGHT 2013 Public Library of Science ;2013 Sonah et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2013 Sonah et al 2013 Sonah et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0054603 ;PMID: 23372741

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14
Clumpak: a program for identifying clustering modes and packaging population structure inferences across K
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Clumpak: a program for identifying clustering modes and packaging population structure inferences across K

Molecular ecology resources, 2015-09, Vol.15 (5), p.1179-1191 [Peer Reviewed Journal]

2015 John Wiley & Sons Ltd ;2015 John Wiley & Sons Ltd. ;ISSN: 1755-098X ;ISSN: 1755-0998 ;EISSN: 1755-0998 ;DOI: 10.1111/1755-0998.12387 ;PMID: 25684545

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15
UpSetR: an R package for the visualization of intersecting sets and their properties
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Article
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UpSetR: an R package for the visualization of intersecting sets and their properties

Bioinformatics (Oxford, England), 2017-09, Vol.33 (18), p.2938-2940 [Peer Reviewed Journal]

The Author(s) 2017. Published by Oxford University Press. ;The Author 2017. Published by Oxford University Press. 2017 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btx364 ;PMID: 28645171

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16
Benchmarking Relatedness Inference Methods with Genome-Wide Data from Thousands of Relatives
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Benchmarking Relatedness Inference Methods with Genome-Wide Data from Thousands of Relatives

Genetics (Austin), 2017-09, Vol.207 (1), p.75-82 [Peer Reviewed Journal]

Copyright © 2017 Ramstetter et al. ;Copyright Genetics Society of America Sep 2017 ;Copyright © 2017 Ramstetter . 2017 ;ISSN: 1943-2631 ;ISSN: 0016-6731 ;EISSN: 1943-2631 ;DOI: 10.1534/genetics.117.1122 ;PMID: 28739658

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17
Liquid Biopsies, What We Do Not Know (Yet)
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Article
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Liquid Biopsies, What We Do Not Know (Yet)

Cancer cell, 2017-02, Vol.31 (2), p.172-179 [Peer Reviewed Journal]

2017 Elsevier Inc. ;Copyright © 2017 Elsevier Inc. All rights reserved. ;ISSN: 1535-6108 ;EISSN: 1878-3686 ;DOI: 10.1016/j.ccell.2017.01.002 ;PMID: 28196593

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18
Content and Performance of the MiniMUGA Genotyping Array: A New Tool To Improve Rigor and Reproducibility in Mouse Research
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Article
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Content and Performance of the MiniMUGA Genotyping Array: A New Tool To Improve Rigor and Reproducibility in Mouse Research

Genetics (Austin), 2020-12, Vol.216 (4), p.905-930 [Peer Reviewed Journal]

Copyright © 2020 by the Genetics Society of America 2020 ;Copyright © 2020 by the Genetics Society of America. ;Copyright Genetics Society of America Dec 2020 ;ISSN: 1943-2631 ;ISSN: 0016-6731 ;EISSN: 1943-2631 ;DOI: 10.1534/genetics.120.303596 ;PMID: 33067325

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19
Nonbiopsy Diagnosis of Cardiac Transthyretin Amyloidosis
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Nonbiopsy Diagnosis of Cardiac Transthyretin Amyloidosis

Circulation (New York, N.Y.), 2016-06, Vol.133 (24), p.2404-2412 [Peer Reviewed Journal]

2016 by the American College of Cardiology Foundation and the American Heart Association, Inc. ;2016 American Heart Association, Inc. ;ISSN: 0009-7322 ;EISSN: 1524-4539 ;DOI: 10.1161/CIRCULATIONAHA.116.021612 ;PMID: 27143678

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20
Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples
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Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples

Genetics (Austin), 2019-07, Vol.212 (3), p.587-614 [Peer Reviewed Journal]

Copyright © 2019 by the Genetics Society of America. ;Copyright Genetics Society of America Jul 2019 ;Distributed under a Creative Commons Attribution 4.0 International License ;Copyright © 2019 by the Genetics Society of America 2019 ;ISSN: 1943-2631 ;ISSN: 0016-6731 ;EISSN: 1943-2631 ;DOI: 10.1534/genetics.119.302057 ;PMID: 31088861

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