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Refined by: subject: Dna Methylation remove
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1
Hypermethylation of gene body CpG islands predicts high dosage of functional oncogenes in liver cancer
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Hypermethylation of gene body CpG islands predicts high dosage of functional oncogenes in liver cancer

Nature communications, 2018-08, Vol.9 (1), p.3164-16, Article 3164 [Peer Reviewed Journal]

2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Distributed under a Creative Commons Attribution 4.0 International License ;The Author(s) 2018 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-018-05550-5 ;PMID: 30089774

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2
DNA methylation of intragenic CpG islands depends on their transcriptional activity during differentiation and disease
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DNA methylation of intragenic CpG islands depends on their transcriptional activity during differentiation and disease

Proceedings of the National Academy of Sciences - PNAS, 2017-09, Vol.114 (36), p.E7526-E7535 [Peer Reviewed Journal]

Volumes 1–89 and 106–114, copyright as a collective work only; author(s) retains copyright to individual articles ;Copyright National Academy of Sciences Sep 5, 2017 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1703087114 ;PMID: 28827334

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3
Gene activation precedes DNA demethylation in response to infection in human dendritic cells
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Gene activation precedes DNA demethylation in response to infection in human dendritic cells

Proceedings of the National Academy of Sciences - PNAS, 2019-04, Vol.116 (14), p.6938-6943 [Peer Reviewed Journal]

Copyright © 2019 the Author(s). Published by PNAS. ;Copyright National Academy of Sciences Apr 2, 2019 ;Attribution - NonCommercial - NoDerivatives ;Copyright © 2019 the Author(s). Published by PNAS. 2019 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1814700116 ;PMID: 30886108

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4
Two competing mechanisms of DNMT3A recruitment regulate the dynamics of de novo DNA methylation at PRC1-targeted CpG islands
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Two competing mechanisms of DNMT3A recruitment regulate the dynamics of de novo DNA methylation at PRC1-targeted CpG islands

Nature genetics, 2021-06, Vol.53 (6), p.794-800 [Peer Reviewed Journal]

COPYRIGHT 2021 Nature Publishing Group ;Copyright Nature Publishing Group Jun 2021 ;ISSN: 1061-4036 ;EISSN: 1546-1718 ;DOI: 10.1038/s41588-021-00856-5 ;PMID: 33986537

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5
DNA methylation loss promotes immune evasion of tumours with high mutation and copy number load
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DNA methylation loss promotes immune evasion of tumours with high mutation and copy number load

Nature communications, 2019-09, Vol.10 (1), p.4278-12, Article 4278 [Peer Reviewed Journal]

2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-12159-9 ;PMID: 31537801

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6
Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling
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Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling

Genome Biology, 2016-10, Vol.17 (1), p.208-208, Article 208 [Peer Reviewed Journal]

2016. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s). 2016 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-016-1066-1 ;PMID: 27717381

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7
Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma
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Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma

The New England journal of medicine, 2016-01, Vol.374 (2), p.135-145 [Peer Reviewed Journal]

Copyright © 2015 Massachusetts Medical Society. All rights reserved. ;ISSN: 0028-4793 ;EISSN: 1533-4406 ;DOI: 10.1056/NEJMoa1505917 ;PMID: 26536169

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8
The Dynamics of Genome-wide DNA Methylation Reprogramming in Mouse Primordial Germ Cells
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The Dynamics of Genome-wide DNA Methylation Reprogramming in Mouse Primordial Germ Cells

Molecular cell, 2012-12, Vol.48 (6), p.849-862 [Peer Reviewed Journal]

2012 Elsevier Inc. ;Copyright © 2012 Elsevier Inc. All rights reserved. ;2012 ELL & Excerpta Medica. 2012 Elsevier Inc. ;ISSN: 1097-2765 ;EISSN: 1097-4164 ;DOI: 10.1016/j.molcel.2012.11.001 ;PMID: 23219530

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9
A DNA methylation atlas of normal human cell types
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A DNA methylation atlas of normal human cell types

Nature (London), 2023-01, Vol.613 (7943), p.355-364 [Peer Reviewed Journal]

2023. The Author(s). ;Copyright Nature Publishing Group Jan 12, 2023 ;The Author(s) 2023 ;ISSN: 0028-0836 ;ISSN: 1476-4687 ;EISSN: 1476-4687 ;DOI: 10.1038/s41586-022-05580-6 ;PMID: 36599988

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10
R-Loop Formation Is a Distinctive Characteristic of Unmethylated Human CpG Island Promoters
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R-Loop Formation Is a Distinctive Characteristic of Unmethylated Human CpG Island Promoters

Molecular cell, 2012-03, Vol.45 (6), p.814-825 [Peer Reviewed Journal]

2012 Elsevier Inc. ;Copyright © 2012 Elsevier Inc. All rights reserved. ;2012 Elsevier Inc. All rights reserved. 2012 ;ISSN: 1097-2765 ;EISSN: 1097-4164 ;DOI: 10.1016/j.molcel.2012.01.017 ;PMID: 22387027

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11
A DNA methylation biomarker of alcohol consumption
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A DNA methylation biomarker of alcohol consumption

Molecular psychiatry, 2018-02, Vol.23 (2), p.422-433 [Peer Reviewed Journal]

COPYRIGHT 2018 Nature Publishing Group ;Copyright Nature Publishing Group Feb 2018 ;Copyright © 2018 The Author(s) 2018 The Author(s) ;ISSN: 1359-4184 ;ISSN: 1476-5578 ;EISSN: 1476-5578 ;DOI: 10.1038/mp.2016.192 ;PMID: 27843151

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12
Genome-wide identification of DNA methylation QTLs in whole blood highlights pathways for cardiovascular disease
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Article
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Genome-wide identification of DNA methylation QTLs in whole blood highlights pathways for cardiovascular disease

Nature communications, 2019-09, Vol.10 (1), p.4267-14, Article 4267 [Peer Reviewed Journal]

2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-12228-z ;PMID: 31537805

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13
Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing
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Article
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Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

Nature methods, 2020-12, Vol.17 (12), p.1191-1199 [Peer Reviewed Journal]

The Author(s), under exclusive licence to Springer Nature America, Inc. 2020. ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-020-01000-7 ;PMID: 33230324

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14
DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns
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DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Genome Biology, 2014-04, Vol.15 (4), p.r54-r54, Article 3248 [Peer Reviewed Journal]

Copyright © 2014 Lokk et al.; licensee BioMed Central Ltd. 2014 Lokk et al.; licensee BioMed Central Ltd. ;ISSN: 1465-6906 ;ISSN: 1474-760X ;EISSN: 1465-6914 ;EISSN: 1474-760X ;DOI: 10.1186/gb-2014-15-4-r54 ;PMID: 24690455

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15
Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo
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Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo

Nature communications, 2018-01, Vol.9 (1), p.391-14, Article 391 [Peer Reviewed Journal]

2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2018 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-017-02762-z ;PMID: 29374152

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16
Chronic Chlamydia infection in human organoids increases stemness and promotes age-dependent CpG methylation
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Article
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Chronic Chlamydia infection in human organoids increases stemness and promotes age-dependent CpG methylation

Nature communications, 2019-03, Vol.10 (1), p.1194-1194, Article 1194 [Peer Reviewed Journal]

This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-09144-7 ;PMID: 30886143

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17
De novo DNA methyltransferase activity in colorectal cancer is directed towards H3K36me3 marked CpG islands
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Article
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De novo DNA methyltransferase activity in colorectal cancer is directed towards H3K36me3 marked CpG islands

Nature communications, 2021-01, Vol.12 (1), p.694-13, Article 694 [Peer Reviewed Journal]

The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2021 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-020-20716-w ;PMID: 33514701

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18
Elucidating the landscape of aberrant DNA methylation in hepatocellular carcinoma
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Elucidating the landscape of aberrant DNA methylation in hepatocellular carcinoma

PloS one, 2013-02, Vol.8 (2), p.e55761-e55761 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;COPYRIGHT 2013 Public Library of Science ;2013 Song et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2013 Song et al 2013 Song et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0055761 ;PMID: 23437062

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19
Epigenetic dysregulation of enhancers in neurons is associated with Alzheimer's disease pathology and cognitive symptoms
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Epigenetic dysregulation of enhancers in neurons is associated with Alzheimer's disease pathology and cognitive symptoms

Nature communications, 2019-05, Vol.10 (1), p.2246-2246, Article 2246 [Peer Reviewed Journal]

The Author(s) 2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-10101-7 ;PMID: 31113950

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20
Epigenetic modulation of inflammation and synaptic plasticity promotes resilience against stress in mice
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Epigenetic modulation of inflammation and synaptic plasticity promotes resilience against stress in mice

Nature communications, 2018-02, Vol.9 (1), p.477-14, Article 477 [Peer Reviewed Journal]

2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2018 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-017-02794-5 ;PMID: 29396460

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