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1
RAB11A Is Essential for Transport of the Influenza Virus Genome to the Plasma Membrane
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RAB11A Is Essential for Transport of the Influenza Virus Genome to the Plasma Membrane

Journal of Virology, 2011-07, Vol.85 (13), p.6117-6126 [Peer Reviewed Journal]

2015 INIST-CNRS ;Copyright © 2011, American Society for Microbiology 2011 American Society for Microbiology ;ISSN: 0022-538X ;EISSN: 1098-5514 ;DOI: 10.1128/JVI.00378-11 ;PMID: 21525351

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2
Characterization of H7N9 influenza A viruses isolated from humans
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Characterization of H7N9 influenza A viruses isolated from humans

Nature (London), 2013-09, Vol.501 (7468), p.551-555 [Peer Reviewed Journal]

COPYRIGHT 2013 Nature Publishing Group ;COPYRIGHT 2013 Nature Publishing Group ;ISSN: 0028-0836 ;EISSN: 1476-4687 ;DOI: 10.1038/nature12392 ;PMID: 23842494

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3
MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape
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MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape

Proceedings of the National Academy of Sciences - PNAS, 2018-01, Vol.115 (5), p.E1012-E1021 [Peer Reviewed Journal]

Volumes 1–89 and 106–114, copyright as a collective work only; author(s) retains copyright to individual articles ;Copyright © 2018 the Author(s). Published by PNAS. ;Copyright National Academy of Sciences Jan 30, 2018 ;Copyright © 2018 the Author(s). Published by PNAS. 2018 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1706928115 ;PMID: 29339515

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4
Plasma lipidome reveals critical illness and recovery from human Ebola virus disease
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Plasma lipidome reveals critical illness and recovery from human Ebola virus disease

Proceedings of the National Academy of Sciences - PNAS, 2019-02, Vol.116 (9), p.3919-3928 [Peer Reviewed Journal]

Copyright National Academy of Sciences Feb 26, 2019 ;2019 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1815356116 ;PMID: 30808769

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5
Hypergraph models of biological networks to identify genes critical to pathogenic viral response
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Hypergraph models of biological networks to identify genes critical to pathogenic viral response

BMC bioinformatics, 2021-05, Vol.22 (1), p.1-287, Article 287 [Peer Reviewed Journal]

2021. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2021 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-021-04197-2 ;PMID: 34051754

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6
Integrated Clinical, Pathologic, Virologic, and Transcriptomic Analysis of H5N1 Influenza Virus-Induced Viral Pneumonia in the Rhesus Macaque
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Integrated Clinical, Pathologic, Virologic, and Transcriptomic Analysis of H5N1 Influenza Virus-Induced Viral Pneumonia in the Rhesus Macaque

Journal of Virology, 2012-06, Vol.86 (11), p.6055-6066 [Peer Reviewed Journal]

2015 INIST-CNRS ;Copyright © 2012, American Society for Microbiology. All Rights Reserved. 2012 American Society for Microbiology ;ISSN: 0022-538X ;EISSN: 1098-5514 ;DOI: 10.1128/JVI.00365-12 ;PMID: 22491448

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7
Serological analysis of Ebola virus survivors and close contacts in Sierra Leone: A cross-sectional study
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Serological analysis of Ebola virus survivors and close contacts in Sierra Leone: A cross-sectional study

PLoS neglected tropical diseases, 2019-08, Vol.13 (8), p.e0007654-e0007654 [Peer Reviewed Journal]

COPYRIGHT 2019 Public Library of Science ;COPYRIGHT 2019 Public Library of Science ;2019 Halfmann et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2019 Halfmann et al 2019 Halfmann et al ;ISSN: 1935-2735 ;ISSN: 1935-2727 ;EISSN: 1935-2735 ;DOI: 10.1371/journal.pntd.0007654 ;PMID: 31369554

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8
C57BL/6J and C57BL/6NJ Mice Are Differentially Susceptible to Inflammation-Associated Disease Caused by Influenza A Virus
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C57BL/6J and C57BL/6NJ Mice Are Differentially Susceptible to Inflammation-Associated Disease Caused by Influenza A Virus

Frontiers in microbiology, 2019-01, Vol.9, p.3307-3307 [Peer Reviewed Journal]

Copyright © 2019 Eisfeld, Gasper, Suresh and Kawaoka. 2019 Eisfeld, Gasper, Suresh and Kawaoka ;ISSN: 1664-302X ;EISSN: 1664-302X ;DOI: 10.3389/fmicb.2018.03307 ;PMID: 30713529

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9
Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses
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Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses

mBio, 2014-05, Vol.5 (3), p.e01174 [Peer Reviewed Journal]

Copyright © 2014 Menachery et al. ;Copyright © 2014 Menachery et al. 2014 Menachery et al. ;ISSN: 2161-2129 ;ISSN: 2150-7511 ;EISSN: 2150-7511 ;DOI: 10.1128/mbio.01174-14 ;PMID: 24846384

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10
Adding protein context to the human protein-protein interaction network to reveal meaningful interactions
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Adding protein context to the human protein-protein interaction network to reveal meaningful interactions

PLoS computational biology, 2013-01, Vol.9 (1), p.e1002860-e1002860 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;COPYRIGHT 2013 Public Library of Science ;2013 Schaefer et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Schaefer MH, Lopes TJS, Mah N, Shoemaker JE, Matsuoka Y, et al. (2013) Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions. PLoS Comput Biol 9(1): e1002860. doi:10.1371/journal.pcbi.1002860 ;2013 Schaefer et al 2013 Schaefer et al ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1002860 ;PMID: 23300433

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11
Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens
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Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens

PLoS computational biology, 2016-07, Vol.12 (7), p.e1005013-e1005013 [Peer Reviewed Journal]

COPYRIGHT 2016 Public Library of Science ;COPYRIGHT 2016 Public Library of Science ;2016 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Chasman D, Walters KB, Lopes TJS, Eisfeld AJ, Kawaoka Y, Roy S (2016) Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens. PLoS Comput Biol 12(7): e1005013. doi:10.1371/journal.pcbi.1005013 ;2016 Chasman et al 2016 Chasman et al ;2016 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Chasman D, Walters KB, Lopes TJS, Eisfeld AJ, Kawaoka Y, Roy S (2016) Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens. PLoS Comput Biol 12(7): e1005013. doi:10.1371/journal.pcbi.1005013 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005013 ;PMID: 27403523

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12
A comprehensive map of the influenza A virus replication cycle
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A comprehensive map of the influenza A virus replication cycle

BMC systems biology, 2013-10, Vol.7 (1), p.97-97, Article 97 [Peer Reviewed Journal]

COPYRIGHT 2013 BioMed Central Ltd. ;COPYRIGHT 2013 BioMed Central Ltd. ;2013 Matsuoka et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ;Copyright © 2013 Matsuoka et al.; licensee BioMed Central Ltd. 2013 Matsuoka et al.; licensee BioMed Central Ltd. ;ISSN: 1752-0509 ;EISSN: 1752-0509 ;DOI: 10.1186/1752-0509-7-97 ;PMID: 24088197

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13
The TLR4-TRIF Pathway Protects against H5N1 Influenza Virus Infection
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The TLR4-TRIF Pathway Protects against H5N1 Influenza Virus Infection

Journal of Virology, 2012-01, Vol.86 (1), p.19-24 [Peer Reviewed Journal]

2015 INIST-CNRS ;Copyright © 2012, American Society for Microbiology. All Rights Reserved. 2012 American Society for Microbiology ;ISSN: 0022-538X ;EISSN: 1098-5514 ;DOI: 10.1128/JVI.06168-11 ;PMID: 22031950

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14
At the centre: influenza A virus ribonucleoproteins
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At the centre: influenza A virus ribonucleoproteins

Nature reviews. Microbiology, 2015-01, Vol.13 (1), p.28-41 [Peer Reviewed Journal]

COPYRIGHT 2015 Nature Publishing Group ;Copyright Nature Publishing Group Jan 2015 ;ISSN: 1740-1526 ;EISSN: 1740-1534 ;DOI: 10.1038/nrmicro3367 ;PMID: 25417656

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15
Annotation of long non-coding RNAs expressed in Collaborative Cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts
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Annotation of long non-coding RNAs expressed in Collaborative Cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts

RNA biology, 2014-07, Vol.11 (7), p.875-890 [Peer Reviewed Journal]

Copyright © 2014 Landes Bioscience 2014 ;ISSN: 1547-6286 ;EISSN: 1555-8584 ;DOI: 10.4161/rna.29442 ;PMID: 24922324

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16
Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism
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Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism

Cell host & microbe, 2016-02, Vol.19 (2), p.254-266 [Peer Reviewed Journal]

2016 Elsevier Inc. ;Copyright © 2016 Elsevier Inc. All rights reserved. ;ISSN: 1931-3128 ;EISSN: 1934-6069 ;DOI: 10.1016/j.chom.2016.01.002 ;PMID: 26867183

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17
Human Immunodeficiency Virus Rev-Binding Protein Is Essential for Influenza A Virus Replication and Promotes Genome Trafficking in Late-Stage Infection
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Human Immunodeficiency Virus Rev-Binding Protein Is Essential for Influenza A Virus Replication and Promotes Genome Trafficking in Late-Stage Infection

Journal of Virology, 2011-09, Vol.85 (18), p.9588-9598 [Peer Reviewed Journal]

2015 INIST-CNRS ;Copyright © 2011, American Society for Microbiology. All Rights Reserved. 2011 American Society for Microbiology ;ISSN: 0022-538X ;EISSN: 1098-5514 ;DOI: 10.1128/JVI.05064-11 ;PMID: 21752912

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18
Host Regulatory Network Response to Infection with Highly Pathogenic H5N1 Avian Influenza Virus
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Host Regulatory Network Response to Infection with Highly Pathogenic H5N1 Avian Influenza Virus

Journal of Virology, 2011-11, Vol.85 (21), p.10955-10967 [Peer Reviewed Journal]

2015 INIST-CNRS ;Copyright © 2011, American Society for Microbiology. All Rights Reserved. 2011 American Society for Microbiology ;ISSN: 0022-538X ;EISSN: 1098-5514 ;DOI: 10.1128/JVI.05792-11 ;PMID: 21865398

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19
An Ultrasensitive Mechanism Regulates Influenza Virus-Induced Inflammation
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An Ultrasensitive Mechanism Regulates Influenza Virus-Induced Inflammation

PLoS pathogens, 2015-06, Vol.11 (6), p.e1004856-e1004856 [Peer Reviewed Journal]

2015 Shoemaker et al 2015 Shoemaker et al ;2015 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Shoemaker JE, Fukuyama S, Eisfeld AJ, Zhao D, Kawakami E, Sakabe S, et al. (2015) An Ultrasensitive Mechanism Regulates Influenza Virus-Induced Inflammation. PLoS Pathog 11(6): e1004856. doi:10.1371/journal.ppat.1004856 ;ISSN: 1553-7374 ;ISSN: 1553-7366 ;EISSN: 1553-7374 ;DOI: 10.1371/journal.ppat.1004856 ;PMID: 26046528

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20
Downregulation of Class I Major Histocompatibility Complex Surface Expression by Varicella-Zoster Virus Involves Open Reading Frame 66 Protein Kinase-Dependent and -Independent Mechanisms
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Downregulation of Class I Major Histocompatibility Complex Surface Expression by Varicella-Zoster Virus Involves Open Reading Frame 66 Protein Kinase-Dependent and -Independent Mechanisms

Journal of Virology, 2007-09, Vol.81 (17), p.9034-9049 [Peer Reviewed Journal]

2007 INIST-CNRS ;Copyright © 2007, American Society for Microbiology 2007 ;ISSN: 0022-538X ;EISSN: 1098-5514 ;DOI: 10.1128/JVI.00711-07 ;PMID: 17567702

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