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1
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
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CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database

Nucleic acids research, 2020-01, Vol.48 (D1), p.D517-D525 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz935 ;PMID: 31665441

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More than 18,000 effectors in the Legionella genus genome provide multiple, independent combinations for replication in human cells
More than 18,000 effectors in the Legionella genus genome provide multiple, independent combinations for replication in human cells
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More than 18,000 effectors in the Legionella genus genome provide multiple, independent combinations for replication in human cells

Proceedings of the National Academy of Sciences - PNAS, 2019-02, Vol.116 (6), p.2265-2273 [Peer Reviewed Journal]

Copyright National Academy of Sciences Feb 5, 2019 ;Distributed under a Creative Commons Attribution 4.0 International License ;2019 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1808016116 ;PMID: 30659146

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3
Social cheating in a Pseudomonas aeruginosa quorum-sensing variant
Social cheating in a Pseudomonas aeruginosa quorum-sensing variant
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Social cheating in a Pseudomonas aeruginosa quorum-sensing variant

Proceedings of the National Academy of Sciences - PNAS, 2019-04, Vol.116 (14), p.7021-7026 [Peer Reviewed Journal]

Copyright National Academy of Sciences Apr 2, 2019 ;Attribution - NonCommercial - NoDerivatives ;2019 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1819801116 ;PMID: 30846553

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4
Biology and evolution of bacterial toxin-antitoxin systems
Biology and evolution of bacterial toxin-antitoxin systems
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Biology and evolution of bacterial toxin-antitoxin systems

Nature reviews. Microbiology, 2022-06, Vol.20 (6), p.335-350 [Peer Reviewed Journal]

2022. Springer Nature Limited. ;Springer Nature Limited 2022. ;ISSN: 1740-1526 ;EISSN: 1740-1534 ;DOI: 10.1038/s41579-021-00661-1 ;PMID: 34975154

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5
Expanded microbial genome coverage and improved protein family annotation in the COG database
Expanded microbial genome coverage and improved protein family annotation in the COG database
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Expanded microbial genome coverage and improved protein family annotation in the COG database

Nucleic acids research, 2015-01, Vol.43 (Database issue), p.D261-D269 [Peer Reviewed Journal]

Published by Oxford University Press on behalf of Nucleic Acids Research 2014. This work is written by US Government employees and is in the public domain in the US. ;Published by Oxford University Press on behalf of Nucleic Acids Research 2014. This work is written by US Government employees and is in the public domain in the US. 2015 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gku1223 ;PMID: 25428365

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6
Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain
Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain
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Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain

Nature communications, 2017-05, Vol.8 (1), p.15483-15483, Article 15483 [Peer Reviewed Journal]

Copyright Nature Publishing Group May 2017 ;Attribution ;Copyright © 2017, The Author(s) 2017 The Author(s) ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/ncomms15483 ;PMID: 28537263

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7
SignalP 5.0 improves signal peptide predictions using deep neural networks
SignalP 5.0 improves signal peptide predictions using deep neural networks
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SignalP 5.0 improves signal peptide predictions using deep neural networks

Nature biotechnology, 2019-04, Vol.37 (4), p.420-423 [Peer Reviewed Journal]

2019© The Author(s), under exclusive licence to Springer Nature America, Inc. 2019 ;ISSN: 1087-0156 ;ISSN: 1546-1696 ;EISSN: 1546-1696 ;DOI: 10.1038/s41587-019-0036-z ;PMID: 30778233

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8
Epidemiology of β-Lactamase-Producing Pathogens
Epidemiology of β-Lactamase-Producing Pathogens
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Epidemiology of β-Lactamase-Producing Pathogens

Clinical microbiology reviews, 2020-03, Vol.33 (2) [Peer Reviewed Journal]

Copyright © 2020 American Society for Microbiology. ;Copyright © 2020 American Society for Microbiology. 2020 American Society for Microbiology ;ISSN: 0893-8512 ;EISSN: 1098-6618 ;DOI: 10.1128/CMR.00047-19 ;PMID: 32102899

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9
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
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Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

Nucleic acids research, 2017-01, Vol.45 (D1), p.D535-D542 [Peer Reviewed Journal]

Published by Oxford University Press on behalf of Nucleic Acids Research 2016. This work is written by (a) US Government employee(s) and is in the public domain in the US. ;Published by Oxford University Press on behalf of Nucleic Acids Research 2016. This work is written by (a) US Government employee(s) and is in the public domain in the US. 2017 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkw1017 ;PMID: 27899627

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10
VFDB 2022: a general classification scheme for bacterial virulence factors
VFDB 2022: a general classification scheme for bacterial virulence factors
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VFDB 2022: a general classification scheme for bacterial virulence factors

Nucleic acids research, 2022-01, Vol.50 (D1), p.D912-D917 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2022 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab1107 ;PMID: 34850947

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11
A Novel Plasmid Entry Exclusion System in pKPC_UVA01, a Promiscuous Conjugative Plasmid Carrying the bla KPC Carbapenemase Gene
A Novel Plasmid Entry Exclusion System in pKPC_UVA01, a Promiscuous Conjugative Plasmid Carrying the bla KPC Carbapenemase Gene
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A Novel Plasmid Entry Exclusion System in pKPC_UVA01, a Promiscuous Conjugative Plasmid Carrying the bla KPC Carbapenemase Gene

Antimicrobial agents and chemotherapy, 2022-03, Vol.66 (3), p.e0232221 [Peer Reviewed Journal]

ISSN: 0066-4804 ;EISSN: 1098-6596 ;DOI: 10.1128/aac.02322-21 ;PMID: 35007138

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12
Systems strategies for developing industrial microbial strains
Systems strategies for developing industrial microbial strains
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Systems strategies for developing industrial microbial strains

Nature biotechnology, 2015-10, Vol.33 (10), p.1061-1072 [Peer Reviewed Journal]

COPYRIGHT 2015 Nature Publishing Group ;COPYRIGHT 2015 Nature Publishing Group ;Copyright Nature Publishing Group Oct 2015 ;ISSN: 1087-0156 ;EISSN: 1546-1696 ;DOI: 10.1038/nbt.3365 ;PMID: 26448090

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13
Engineered CRISPR-Cas12a variants with increased activities and improved targeting ranges for gene, epigenetic and base editing
Engineered CRISPR-Cas12a variants with increased activities and improved targeting ranges for gene, epigenetic and base editing
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Engineered CRISPR-Cas12a variants with increased activities and improved targeting ranges for gene, epigenetic and base editing

Nature biotechnology, 2019-03, Vol.37 (3), p.276-282 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;The Author(s), under exclusive licence to Springer Nature America, Inc. 2019. ;ISSN: 1087-0156 ;EISSN: 1546-1696 ;DOI: 10.1038/s41587-018-0011-0 ;PMID: 30742127

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14
Species-level functional profiling of metagenomes and metatranscriptomes
Species-level functional profiling of metagenomes and metatranscriptomes
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Species-level functional profiling of metagenomes and metatranscriptomes

Nature methods, 2018-11, Vol.15 (11), p.962-968 [Peer Reviewed Journal]

COPYRIGHT 2018 Nature Publishing Group ;Copyright Nature Publishing Group Nov 2018 ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-018-0176-y ;PMID: 30377376

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15
Bacillus subtilis biofilm formation and social interactions
Bacillus subtilis biofilm formation and social interactions
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Bacillus subtilis biofilm formation and social interactions

Nature reviews. Microbiology, 2021-09, Vol.19 (9), p.600-614 [Peer Reviewed Journal]

2021. Springer Nature Limited. ;COPYRIGHT 2021 Nature Publishing Group ;Springer Nature Limited 2021. ;ISSN: 1740-1526 ;EISSN: 1740-1534 ;DOI: 10.1038/s41579-021-00540-9 ;PMID: 33824496

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16
Multiplex gene editing by CRISPR-Cpf1 using a single crRNA array
Multiplex gene editing by CRISPR-Cpf1 using a single crRNA array
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Multiplex gene editing by CRISPR-Cpf1 using a single crRNA array

Nature biotechnology, 2017-01, Vol.35 (1), p.31-34 [Peer Reviewed Journal]

COPYRIGHT 2017 Nature Publishing Group ;COPYRIGHT 2017 Nature Publishing Group ;Copyright Nature Publishing Group Jan 2017 ;Wageningen University & Research ;ISSN: 1087-0156 ;EISSN: 1546-1696 ;DOI: 10.1038/nbt.3737 ;PMID: 27918548

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17
COG database update: focus on microbial diversity, model organisms, and widespread pathogens
COG database update: focus on microbial diversity, model organisms, and widespread pathogens
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COG database update: focus on microbial diversity, model organisms, and widespread pathogens

Nucleic acids research, 2021-01, Vol.49 (D1), p.D274-D281 [Peer Reviewed Journal]

Published by Oxford University Press on behalf of Nucleic Acids Research 2020. 2021 ;Published by Oxford University Press on behalf of Nucleic Acids Research 2020. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkaa1018 ;PMID: 33167031

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18
Increasing the genome-targeting scope and precision of base editing with engineered Cas9-cytidine deaminase fusions
Increasing the genome-targeting scope and precision of base editing with engineered Cas9-cytidine deaminase fusions
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Increasing the genome-targeting scope and precision of base editing with engineered Cas9-cytidine deaminase fusions

Nature biotechnology, 2017-04, Vol.35 (4), p.371-376 [Peer Reviewed Journal]

COPYRIGHT 2017 Nature Publishing Group ;COPYRIGHT 2017 Nature Publishing Group ;Copyright Nature Publishing Group Apr 2017 ;ISSN: 1087-0156 ;EISSN: 1546-1696 ;DOI: 10.1038/nbt.3803 ;PMID: 28191901

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19
Fast hierarchical Bayesian analysis of population structure
Fast hierarchical Bayesian analysis of population structure
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Fast hierarchical Bayesian analysis of population structure

Nucleic acids research, 2019-06, Vol.47 (11), p.5539-5549 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. ;info:eu-repo/semantics/openAccess ;The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz361 ;PMID: 31076776

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20
Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems
Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems
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Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems

Molecular cell, 2015-11, Vol.60 (3), p.385-397 [Peer Reviewed Journal]

2015 Elsevier Inc. ;Copyright © 2015 Elsevier Inc. All rights reserved. ;ISSN: 1097-2765 ;EISSN: 1097-4164 ;DOI: 10.1016/j.molcel.2015.10.008 ;PMID: 26593719

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