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1
A Network of Noncoding Regulatory RNAs Acts in the Mammalian Brain
A Network of Noncoding Regulatory RNAs Acts in the Mammalian Brain
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A Network of Noncoding Regulatory RNAs Acts in the Mammalian Brain

Cell, 2018-07, Vol.174 (2), p.350-362.e17 [Peer Reviewed Journal]

2018 Elsevier Inc. ;Copyright © 2018 Elsevier Inc. All rights reserved. ;ISSN: 0092-8674 ;EISSN: 1097-4172 ;DOI: 10.1016/j.cell.2018.05.022 ;PMID: 29887379

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2
Structural Basis for Target-Directed MicroRNA Degradation
Structural Basis for Target-Directed MicroRNA Degradation
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Structural Basis for Target-Directed MicroRNA Degradation

Molecular cell, 2019-09, Vol.75 (6), p.1243-1255.e7 [Peer Reviewed Journal]

2019 Elsevier Inc. ;Copyright © 2019 Elsevier Inc. All rights reserved. ;ISSN: 1097-2765 ;EISSN: 1097-4164 ;DOI: 10.1016/j.molcel.2019.06.019 ;PMID: 31353209

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3
Addressing Extreme Propensity Scores via the Overlap Weights
Addressing Extreme Propensity Scores via the Overlap Weights
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Addressing Extreme Propensity Scores via the Overlap Weights

American journal of epidemiology, 2019-01, Vol.188 (1), p.250-257 [Peer Reviewed Journal]

ISSN: 0002-9262 ;EISSN: 1476-6256 ;DOI: 10.1093/aje/kwy201

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4
Towards an understanding of jet substructure
Towards an understanding of jet substructure
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Towards an understanding of jet substructure

The journal of high energy physics, 2013-09, Vol.2013 (9), p.1-57, Article 29 [Peer Reviewed Journal]

SISSA 2013 ;SISSA, Trieste, Italy 2013 ;ISSN: 1029-8479 ;EISSN: 1029-8479 ;DOI: 10.1007/JHEP09(2013)029

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5
Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads
Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads
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Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads

BMC bioinformatics, 2014-06, Vol.15 (1), p.182-182, Article 182 [Peer Reviewed Journal]

COPYRIGHT 2014 BioMed Central Ltd. ;2014 Jiang et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. ;Copyright © 2014 Jiang et al.; licensee BioMed Central Ltd. 2014 Jiang et al.; licensee BioMed Central Ltd. ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/1471-2105-15-182 ;PMID: 24925680

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6
ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference
ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference
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ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference

PLoS biology, 2020-12, Vol.18 (12), p.e3001007-e3001007 [Peer Reviewed Journal]

2020 Steenwyk et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2020 Steenwyk et al 2020 Steenwyk et al ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.3001007 ;PMID: 33264284

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7
cutPrimers: A New Tool for Accurate Cutting of Primers from Reads of Targeted Next Generation Sequencing
cutPrimers: A New Tool for Accurate Cutting of Primers from Reads of Targeted Next Generation Sequencing
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cutPrimers: A New Tool for Accurate Cutting of Primers from Reads of Targeted Next Generation Sequencing

Journal of computational biology, 2017-11, Vol.24 (11), p.1138-1143 [Peer Reviewed Journal]

ISSN: 1557-8666 ;EISSN: 1557-8666 ;DOI: 10.1089/cmb.2017.0096 ;PMID: 28715235

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8
An extensive evaluation of read trimming effects on Illumina NGS data analysis
An extensive evaluation of read trimming effects on Illumina NGS data analysis
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An extensive evaluation of read trimming effects on Illumina NGS data analysis

PloS one, 2013-12, Vol.8 (12), p.e85024-e85024 [Peer Reviewed Journal]

COPYRIGHT 2013 Public Library of Science ;COPYRIGHT 2013 Public Library of Science ;2013 Del Fabbro et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2013 Del Fabbro et al 2013 Del Fabbro et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0085024 ;PMID: 24376861

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9
pTrimmer: An efficient tool to trim primers of multiplex deep sequencing data
pTrimmer: An efficient tool to trim primers of multiplex deep sequencing data
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pTrimmer: An efficient tool to trim primers of multiplex deep sequencing data

BMC bioinformatics, 2019-05, Vol.20 (1), p.236-236, Article 236 [Peer Reviewed Journal]

COPYRIGHT 2019 BioMed Central Ltd. ;2019. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s). 2019 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-019-2854-x ;PMID: 31077131

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10
Structure-function analysis of microRNA 3′-end trimming by Nibbler
Structure-function analysis of microRNA 3′-end trimming by Nibbler
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Structure-function analysis of microRNA 3′-end trimming by Nibbler

Proceedings of the National Academy of Sciences - PNAS, 2020-12, Vol.117 (48), p.30370-30379 [Peer Reviewed Journal]

Copyright National Academy of Sciences Dec 1, 2020 ;2020 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.2018156117 ;PMID: 33199607

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11
Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference
Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference
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Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference

Systematic biology, 2015-09, Vol.64 (5), p.778-791 [Peer Reviewed Journal]

Copyright © 2015 Society of Systematic Biologists ;The Author(s) 2015. Published by Oxford University Press on behalf of the Society of Systematic Biologists. 2015 ;The Author(s) 2015. Published by Oxford University Press on behalf of the Society of Systematic Biologists. ;Copyright Oxford University Press, UK Sep 2015 ;ISSN: 1063-5157 ;EISSN: 1076-836X ;DOI: 10.1093/sysbio/syv033 ;PMID: 26031838

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12
Enhancement of proteasome activity by a small-molecule inhibitor of USP14
Enhancement of proteasome activity by a small-molecule inhibitor of USP14
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Enhancement of proteasome activity by a small-molecule inhibitor of USP14

Nature (London), 2010-09, Vol.467 (7312), p.179-184 [Peer Reviewed Journal]

2015 INIST-CNRS ;COPYRIGHT 2010 Nature Publishing Group ;COPYRIGHT 2010 Nature Publishing Group ;Copyright Nature Publishing Group Sep 9, 2010 ;ISSN: 0028-0836 ;EISSN: 1476-4687 ;DOI: 10.1038/nature09299 ;PMID: 20829789 ;CODEN: NATUAS

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13
Weight trimming and propensity score weighting
Weight trimming and propensity score weighting
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Weight trimming and propensity score weighting

PloS one, 2011-03, Vol.6 (3), p.e18174-e18174 [Peer Reviewed Journal]

COPYRIGHT 2011 Public Library of Science ;COPYRIGHT 2011 Public Library of Science ;2011 Lee et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Lee et al. 2011 ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0018174 ;PMID: 21483818

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14
PNLDC1 is essential for piRNA 3' end trimming and transposon silencing during spermatogenesis in mice
PNLDC1 is essential for piRNA 3' end trimming and transposon silencing during spermatogenesis in mice
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PNLDC1 is essential for piRNA 3' end trimming and transposon silencing during spermatogenesis in mice

Nature communications, 2017-10, Vol.8 (1), p.819-10, Article 819 [Peer Reviewed Journal]

2017. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2017 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-017-00854-4 ;PMID: 29018194

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15
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
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BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

BMC evolutionary biology, 2010-07, Vol.10 (1), p.210-210 [Peer Reviewed Journal]

COPYRIGHT 2010 BioMed Central Ltd. ;COPYRIGHT 2010 BioMed Central Ltd. ;2010. This work is licensed under http://creativecommons.org/licenses/by/2.0 (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Attribution ;Copyright ©2010 Criscuolo and Gribaldo; licensee BioMed Central Ltd. 2010 Criscuolo and Gribaldo; licensee BioMed Central Ltd. ;ISSN: 1471-2148 ;EISSN: 1471-2148 ;DOI: 10.1186/1471-2148-10-210 ;PMID: 20626897

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16
Propensity Score Weighting and Trimming Strategies for Reducing Variance and Bias of Treatment Effect Estimates: A Simulation Study
Propensity Score Weighting and Trimming Strategies for Reducing Variance and Bias of Treatment Effect Estimates: A Simulation Study
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Propensity Score Weighting and Trimming Strategies for Reducing Variance and Bias of Treatment Effect Estimates: A Simulation Study

American journal of epidemiology, 2021-08, Vol.190 (8), p.1659-1670 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of the Johns Hopkins Bloomberg School of Public Health. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. 2021 ;The Author(s) 2021. Published by Oxford University Press on behalf of the Johns Hopkins Bloomberg School of Public Health. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 0002-9262 ;EISSN: 1476-6256 ;DOI: 10.1093/aje/kwab041 ;PMID: 33615349

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17
Comparison of preribosomal RNA processing pathways in yeast, plant and human cells – focus on coordinated action of endo‐ and exoribonucleases
Comparison of preribosomal RNA processing pathways in yeast, plant and human cells – focus on coordinated action of endo‐ and exoribonucleases
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Comparison of preribosomal RNA processing pathways in yeast, plant and human cells – focus on coordinated action of endo‐ and exoribonucleases

FEBS letters, 2017-07, Vol.591 (13), p.1801-1850 [Peer Reviewed Journal]

2017 Federation of European Biochemical Societies ;2017 Federation of European Biochemical Societies. ;ISSN: 0014-5793 ;EISSN: 1873-3468 ;DOI: 10.1002/1873-3468.12682 ;PMID: 28524231

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18
Flexible, Stretchable, Transparent Conducting Films Made from Superaligned Carbon Nanotubes
Flexible, Stretchable, Transparent Conducting Films Made from Superaligned Carbon Nanotubes
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Flexible, Stretchable, Transparent Conducting Films Made from Superaligned Carbon Nanotubes

Advanced functional materials, 2010-03, Vol.20 (6), p.885-891 [Peer Reviewed Journal]

Copyright © 2010 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim ;ISSN: 1616-301X ;ISSN: 1616-3028 ;EISSN: 1616-3028 ;DOI: 10.1002/adfm.200901960

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19
On the optimal trimming of high-throughput mRNA sequence data
On the optimal trimming of high-throughput mRNA sequence data
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On the optimal trimming of high-throughput mRNA sequence data

Frontiers in genetics, 2014, Vol.5, p.13-13 [Peer Reviewed Journal]

Copyright © 2014 MacManes. 2014 ;ISSN: 1664-8021 ;EISSN: 1664-8021 ;DOI: 10.3389/fgene.2014.00013 ;PMID: 24567737

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20
Trimming of sequence reads alters RNA-Seq gene expression estimates
Trimming of sequence reads alters RNA-Seq gene expression estimates
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Trimming of sequence reads alters RNA-Seq gene expression estimates

BMC bioinformatics, 2016-02, Vol.17 (103), p.103-103, Article 103 [Peer Reviewed Journal]

COPYRIGHT 2016 BioMed Central Ltd. ;Copyright BioMed Central 2016 ;Williams et al. 2016 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-016-0956-2 ;PMID: 26911985

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