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1
Unsupervised multiple kernel learning for heterogeneous data integration
Unsupervised multiple kernel learning for heterogeneous data integration
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Article 		Add to My Research

Unsupervised multiple kernel learning for heterogeneous data integration

Bioinformatics, 2018-03, Vol.34 (6), p.1009-1015 [Peer Reviewed Journal]

The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2017 ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btx682 ;PMID: 29077792

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2
Automated calibration of consensus weighted distance-based clustering approaches using sharp
Automated calibration of consensus weighted distance-based clustering approaches using sharp
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Automated calibration of consensus weighted distance-based clustering approaches using sharp

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11) [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press. 2023 ;The Author(s) 2023. Published by Oxford University Press. ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1367-4811 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btad635 ;PMID: 37847776

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3
Protein model quality assessment using 3D oriented convolutional neural networks
Protein model quality assessment using 3D oriented convolutional neural networks
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Protein model quality assessment using 3D oriented convolutional neural networks

Bioinformatics, 2019-09, Vol.35 (18), p.3313-3319 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2019 ;The Author(s) 2019. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz122 ;PMID: 30874723

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4
Plasma amyloid β 40/42 ratio predicts cerebral amyloidosis in cognitively normal individuals at risk for Alzheimer's disease
Plasma amyloid β 40/42 ratio predicts cerebral amyloidosis in cognitively normal individuals at risk for Alzheimer's disease
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Plasma amyloid β 40/42 ratio predicts cerebral amyloidosis in cognitively normal individuals at risk for Alzheimer's disease

Alzheimer's & dementia, 2019-06, Vol.15 (6), p.764-775 [Peer Reviewed Journal]

Attribution - NonCommercial ;ISSN: 1552-5260 ;EISSN: 1552-5279 ;DOI: 10.1016/j.jalz.2019.03.009

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5
Machine learning in marine ecology: an overview of techniques and applications
Machine learning in marine ecology: an overview of techniques and applications
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Article 		Add to My Research

Machine learning in marine ecology: an overview of techniques and applications

ICES journal of marine science, 2023-09, Vol.80 (7), p.1829-1853 [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press on behalf of International Council for the Exploration of the Sea. 2023 ;Attribution ;ISSN: 1054-3139 ;EISSN: 1095-9289 ;DOI: 10.1093/icesjms/fsad100

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6
VoroCNN: deep convolutional neural network built on 3D Voronoi tessellation of protein structures
VoroCNN: deep convolutional neural network built on 3D Voronoi tessellation of protein structures
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VoroCNN: deep convolutional neural network built on 3D Voronoi tessellation of protein structures

Bioinformatics (Oxford, England), 2021-08, Vol.37 (16), p.2332-2339 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2021 ;The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;Attribution - NonCommercial ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab118 ;PMID: 33620450

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7
Design of a decision support system for predicting the progression of Alzheimer’s disease
Design of a decision support system for predicting the progression of Alzheimer’s disease
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Conference Proceeding 		Add to My Research

Design of a decision support system for predicting the progression of Alzheimer’s disease

Distributed under a Creative Commons Attribution 4.0 International License ;DOI: 10.1016/j.jalz.2018.06.371

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8
GraphGONet: a self-explaining neural network encapsulating the Gene Ontology graph for phenotype prediction on gene expression
GraphGONet: a self-explaining neural network encapsulating the Gene Ontology graph for phenotype prediction on gene expression
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GraphGONet: a self-explaining neural network encapsulating the Gene Ontology graph for phenotype prediction on gene expression

Bioinformatics (Oxford, England), 2022-04, Vol.38 (9), p.2504-2511 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2022 ;The Author(s) (2022). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btac147 ;PMID: 35266505

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9
Fast metabolite identification with Input Output Kernel Regression
Fast metabolite identification with Input Output Kernel Regression
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Fast metabolite identification with Input Output Kernel Regression

Bioinformatics, 2016-06, Vol.32 (12), p.i28-i36 [Peer Reviewed Journal]

The Author 2016. Published by Oxford University Press. ;Attribution - NonCommercial ;The Author 2016. Published by Oxford University Press. 2016 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btw246 ;PMID: 27307628

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10
An overview of machine learning methods for monotherapy drug response prediction
An overview of machine learning methods for monotherapy drug response prediction
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Article 		Add to My Research

An overview of machine learning methods for monotherapy drug response prediction

Briefings in bioinformatics, 2022-01, Vol.23 (1) [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press. 2021 ;The Author(s) 2021. Published by Oxford University Press. ;Attribution ;ISSN: 1467-5463 ;EISSN: 1477-4054 ;DOI: 10.1093/bib/bbab408 ;PMID: 34619752

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11
Biological sequence modeling with convolutional kernel networks
Biological sequence modeling with convolutional kernel networks
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Biological sequence modeling with convolutional kernel networks

Bioinformatics, 2019-09, Vol.35 (18), p.3294-3302 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2019 ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz094 ;PMID: 30753280

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12
Coral reef structural complexity provides important coastal protection from waves under rising sea levels
Coral reef structural complexity provides important coastal protection from waves under rising sea levels
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Article 		Add to My Research

Coral reef structural complexity provides important coastal protection from waves under rising sea levels

Science advances, 2018-02, Vol.4 (2), p.eaao4350-eaao4350 [Peer Reviewed Journal]

Attribution - NonCommercial ;Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC). 2018 The Authors ;ISSN: 2375-2548 ;EISSN: 2375-2548 ;DOI: 10.1126/sciadv.aao4350 ;PMID: 29503866

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13
Probabilistic count matrix factorization for single cell expression data analysis
Probabilistic count matrix factorization for single cell expression data analysis
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Article 		Add to My Research

Probabilistic count matrix factorization for single cell expression data analysis

Bioinformatics, 2019-10, Vol.35 (20), p.4011-4019 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2019 ;The Author(s) (2019). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1367-4803 ;ISSN: 1367-4811 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz177 ;PMID: 30865271

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14
Defining the extent of gene function using ROC curvature
Defining the extent of gene function using ROC curvature
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Article 		Add to My Research

Defining the extent of gene function using ROC curvature

Bioinformatics (Oxford, England), 2022-12, Vol.38 (24), p.5390-5397 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press. ;Attribution ;The Author(s) 2022. Published by Oxford University Press. 2022 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btac692 ;PMID: 36271855

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15
quicksom: Self-Organizing Maps on GPUs for clustering of molecular dynamics trajectories
quicksom: Self-Organizing Maps on GPUs for clustering of molecular dynamics trajectories
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quicksom: Self-Organizing Maps on GPUs for clustering of molecular dynamics trajectories

Bioinformatics, 2021-08, Vol.37 (14), p.2064-2065 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. 2020 ;Attribution - NonCommercial ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa925 ;PMID: 33135048

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16
BraneMF: integration of biological networks for functional analysis of proteins
BraneMF: integration of biological networks for functional analysis of proteins
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Article 		Add to My Research

BraneMF: integration of biological networks for functional analysis of proteins

Bioinformatics (Oxford, England), 2022-12, Vol.38 (24), p.5383-5389 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com. ;Attribution ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btac691 ;PMID: 36321881

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17
Guided interactive image segmentation using machine learning and color-based image set clustering
Guided interactive image segmentation using machine learning and color-based image set clustering
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Article 		Add to My Research

Guided interactive image segmentation using machine learning and color-based image set clustering

Bioinformatics (Oxford, England), 2022-09, Vol.38 (19), p.4622-4628 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press. ;Distributed under a Creative Commons Attribution 4.0 International License ;The Author(s) 2022. Published by Oxford University Press. 2022 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btac547 ;PMID: 35976110

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18
Prediction of 7‐year's conversion from subjective cognitive decline to mild cognitive impairment
Prediction of 7‐year's conversion from subjective cognitive decline to mild cognitive impairment
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Article 		Add to My Research

Prediction of 7‐year's conversion from subjective cognitive decline to mild cognitive impairment

Human brain mapping, 2021-01, Vol.42 (1), p.192-203 [Peer Reviewed Journal]

2020 The Authors. published by Wiley Periodicals LLC. ;2020 The Authors. Human Brain Mapping published by Wiley Periodicals LLC. ;2020. This article is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1065-9471 ;EISSN: 1097-0193 ;DOI: 10.1002/hbm.25216 ;PMID: 33030795

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19
Model learning to identify systemic regulators of the peripheral circadian clock
Model learning to identify systemic regulators of the peripheral circadian clock
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Article 		Add to My Research

Model learning to identify systemic regulators of the peripheral circadian clock

Bioinformatics, 2021-07, Vol.37 (Supplement_1), p.i401-i409 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press. 2021 ;Attribution ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab297 ;PMID: 34252929

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20
Efficient RNA isoform identification and quantification from RNA-Seq data with network flows
Efficient RNA isoform identification and quantification from RNA-Seq data with network flows
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Article 		Add to My Research

Efficient RNA isoform identification and quantification from RNA-Seq data with network flows

Bioinformatics (Oxford, England), 2014-09, Vol.30 (17), p.2447-2455 [Peer Reviewed Journal]

The Author 2014. Published by Oxford University Press. ;Distributed under a Creative Commons Attribution 4.0 International License ;The Author 2014. Published by Oxford University Press. 2014 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btu317 ;PMID: 24813214

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