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1
Snakemake—a scalable bioinformatics workflow engine
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Snakemake—a scalable bioinformatics workflow engine

Bioinformatics (Oxford, England), 2012-10, Vol.28 (19), p.2520-2522 [Peer Reviewed Journal]

2015 INIST-CNRS ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bts480 ;PMID: 22908215

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2
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
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DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

Bioinformatics, 2009-06, Vol.25 (11), p.1451-1452 [Peer Reviewed Journal]

The Author 2009. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org 2009 ;2009 INIST-CNRS ;(c) Librado Sanz, Pablo et al., 2009 info:eu-repo/semantics/openAccess ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btp187 ;PMID: 19346325 ;CODEN: BOINFP

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3
synbreed: a framework for the analysis of genomic prediction data using R
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synbreed: a framework for the analysis of genomic prediction data using R

Bioinformatics, 2012-08, Vol.28 (15), p.2086-2087 [Peer Reviewed Journal]

2015 INIST-CNRS ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/bts335 ;PMID: 22689388

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4
Manipulation of FASTQ data with Galaxy
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Manipulation of FASTQ data with Galaxy

Bioinformatics, 2010-07, Vol.26 (14), p.1783-1785 [Peer Reviewed Journal]

2015 INIST-CNRS ;The Author(s) 2010. Published by Oxford University Press. 2010 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btq281 ;PMID: 20562416

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5
A novel hybrid gene prediction method employing protein multiple sequence alignments
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A novel hybrid gene prediction method employing protein multiple sequence alignments

Bioinformatics, 2011-03, Vol.27 (6), p.757-763 [Peer Reviewed Journal]

2015 INIST-CNRS ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btr010 ;PMID: 21216780

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6
microeco: an R package for data mining in microbial community ecology
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microeco: an R package for data mining in microbial community ecology

FEMS microbiology ecology, 2021-02, Vol.97 (2), p.1 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press on behalf of FEMS. 2020 ;The Author(s) 2020. Published by Oxford University Press on behalf of FEMS. ;COPYRIGHT 2021 Oxford University Press ;ISSN: 1574-6941 ;ISSN: 0168-6496 ;EISSN: 1574-6941 ;DOI: 10.1093/femsec/fiaa255 ;PMID: 33332530

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7
rtracklayer: an R package for interfacing with genome browsers
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rtracklayer: an R package for interfacing with genome browsers

Bioinformatics, 2009-07, Vol.25 (14), p.1841-1842 [Peer Reviewed Journal]

2009 The Author(s) 2009 ;2009 INIST-CNRS ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btp328 ;PMID: 19468054 ;CODEN: BOINFP

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8
Multiple imputation by chained equations: what is it and how does it work?
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Multiple imputation by chained equations: what is it and how does it work?

International journal of methods in psychiatric research, 2011-03, Vol.20 (1), p.40-49 [Peer Reviewed Journal]

Copyright © 2011 John Wiley & Sons, Ltd. ;ISSN: 1049-8931 ;ISSN: 1557-0657 ;EISSN: 1557-0657 ;DOI: 10.1002/mpr.329 ;PMID: 21499542

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9
Pharmacometabonomics: data processing and statistical analysis
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Pharmacometabonomics: data processing and statistical analysis

Briefings in bioinformatics, 2021-09, Vol.22 (5) [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;ISSN: 1467-5463 ;EISSN: 1477-4054 ;DOI: 10.1093/bib/bbab138 ;PMID: 33866355

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10
ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
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ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

Bioinformatics, 2015-07, Vol.31 (14), p.2382-2383 [Peer Reviewed Journal]

The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/btv145 ;PMID: 25765347

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11
InterProScan 5: genome-scale protein function classification
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InterProScan 5: genome-scale protein function classification

Bioinformatics, 2014-05, Vol.30 (9), p.1236-1240 [Peer Reviewed Journal]

The Author 2014. Published by Oxford University Press. 2014 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btu031 ;PMID: 24451626

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12
PhiPipe: A multi‐modal MRI data processing pipeline with test–retest reliability and predicative validity assessments
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PhiPipe: A multi‐modal MRI data processing pipeline with test–retest reliability and predicative validity assessments

Human brain mapping, 2023-04, Vol.44 (5), p.2062-2084 [Peer Reviewed Journal]

2022 The Authors. published by Wiley Periodicals LLC. ;2022 The Authors. Human Brain Mapping published by Wiley Periodicals LLC. ;COPYRIGHT 2023 John Wiley & Sons, Inc. ;2022. This article is published under http://creativecommons.org/licenses/by-nc/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1065-9471 ;EISSN: 1097-0193 ;DOI: 10.1002/hbm.26194 ;PMID: 36583399

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13
Machine intelligence and the data-driven future of marine science
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Machine intelligence and the data-driven future of marine science

ICES journal of marine science, 2020-07, Vol.77 (4), p.1274-1285 [Peer Reviewed Journal]

International Council for the Exploration of the Sea 2019. All rights reserved. For permissions, please email: journals.permissions@oup.com 2019 ;ISSN: 1095-9289 ;EISSN: 1095-9289 ;DOI: 10.1093/icesjms/fsz057

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14
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
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IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

Bioinformatics (Oxford, England), 2012-06, Vol.28 (11), p.1420-1428 [Peer Reviewed Journal]

2015 INIST-CNRS ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bts174 ;PMID: 22495754

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15
CD-HIT: accelerated for clustering the next-generation sequencing data
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CD-HIT: accelerated for clustering the next-generation sequencing data

Bioinformatics, 2012-12, Vol.28 (23), p.3150-3152 [Peer Reviewed Journal]

2014 INIST-CNRS ;The Author 2012. Published by Oxford University Press. 2012 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/bts565 ;PMID: 23060610

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16
GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update
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GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update

Bioinformatics (Oxford, England), 2012-10, Vol.28 (19), p.2537-2539 [Peer Reviewed Journal]

2015 INIST-CNRS ;The Author(s) 2012. Published by Oxford University Press. 2012 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bts460 ;PMID: 22820204

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17
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
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Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

Bioinformatics (Oxford, England), 2012-06, Vol.28 (12), p.1647-1649 [Peer Reviewed Journal]

2015 INIST-CNRS ;The Author(s) 2012. Published by Oxford University Press. 2012 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bts199 ;PMID: 22543367

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18
Automated volumetry and regional thickness analysis of hippocampal subfields and medial temporal cortical structures in mild cognitive impairment
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Automated volumetry and regional thickness analysis of hippocampal subfields and medial temporal cortical structures in mild cognitive impairment

Human brain mapping, 2015-01, Vol.36 (1), p.258-287 [Peer Reviewed Journal]

2014 Wiley Periodicals, Inc. ;ISSN: 1065-9471 ;EISSN: 1097-0193 ;DOI: 10.1002/hbm.22627 ;PMID: 25181316

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19
Closing the circle: current state and perspectives of circular RNA databases
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Closing the circle: current state and perspectives of circular RNA databases

Briefings in bioinformatics, 2021-01, Vol.22 (1), p.288-297 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. 2020 ;The Author(s) 2020. Published by Oxford University Press. ;ISSN: 1477-4054 ;ISSN: 1467-5463 ;EISSN: 1477-4054 ;DOI: 10.1093/bib/bbz175 ;PMID: 31998941

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20
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
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SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

Bioinformatics, 2012-12, Vol.28 (24), p.3211-3217 [Peer Reviewed Journal]

2014 INIST-CNRS ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;EISSN: 1460-2059 ;DOI: 10.1093/bioinformatics/bts611 ;PMID: 23071270

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