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1
In silico pKaprediction
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In silico pKaprediction

Journal of cheminformatics, 2012-05, Vol.4 (Suppl 1) [Peer Reviewed Journal]

Körner et al; licensee BioMed Central Ltd. 2012. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ;EISSN: 1758-2946 ;DOI: 10.1186/1758-2946-4-S1-P55

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2
Mordred: a molecular descriptor calculator
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Mordred: a molecular descriptor calculator

Journal of cheminformatics, 2018-02, Vol.10 (1), p.4-4, Article 4 [Peer Reviewed Journal]

The Author(s) 2018 ;COPYRIGHT 2018 BioMed Central Ltd. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-018-0258-y ;PMID: 29411163

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3
Molecular de-novo design through deep reinforcement learning
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Molecular de-novo design through deep reinforcement learning

Journal of cheminformatics, 2017-09, Vol.9 (1), p.48-14, Article 48 [Peer Reviewed Journal]

The Author(s) 2017 ;COPYRIGHT 2017 BioMed Central Ltd. ;Journal of Cheminformatics is a copyright of Springer, (2017). All Rights Reserved. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-017-0235-x ;PMID: 29086083

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4
GNINA 1.0: molecular docking with deep learning
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GNINA 1.0: molecular docking with deep learning

Journal of cheminformatics, 2021-06, Vol.13 (1), p.43-43, Article 43 [Peer Reviewed Journal]

The Author(s) 2021 ;COPYRIGHT 2021 BioMed Central Ltd. ;The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-021-00522-2 ;PMID: 34108002

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5
TCMSP: a database of systems pharmacology for drug discovery from herbal medicines
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TCMSP: a database of systems pharmacology for drug discovery from herbal medicines

Journal of cheminformatics, 2014-04, Vol.6 (1), p.13-13, Article 13 [Peer Reviewed Journal]

Ru et al.; licensee Chemistry Central Ltd. 2014. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver ( ) applies to the data made available in this article, unless otherwise stated. ;COPYRIGHT 2014 BioMed Central Ltd. ;2014 Ru et al.; licensee Chemistry Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. ;Copyright © 2014 Ru et al.; licensee Chemistry Central Ltd. 2014 Ru et al.; licensee Chemistry Central Ltd. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/1758-2946-6-13 ;PMID: 24735618

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6
ClassyFire: automated chemical classification with a comprehensive, computable taxonomy
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ClassyFire: automated chemical classification with a comprehensive, computable taxonomy

Journal of cheminformatics, 2016-11, Vol.8 (1), p.61-61, Article 61 [Peer Reviewed Journal]

The Author(s) 2016 ;Journal of Cheminformatics is a copyright of Springer, 2016. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-016-0174-y ;PMID: 27867422

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7
MetFrag relaunched: incorporating strategies beyond in silico fragmentation
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MetFrag relaunched: incorporating strategies beyond in silico fragmentation

Journal of cheminformatics, 2016-01, Vol.8 (1), p.3-3, Article 3 [Peer Reviewed Journal]

Ruttkies et al. 2016 ;Journal of Cheminformatics is a copyright of Springer, 2016. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-016-0115-9 ;PMID: 26834843

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8
Molecular representations in AI-driven drug discovery: a review and practical guide
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Molecular representations in AI-driven drug discovery: a review and practical guide

Journal of cheminformatics, 2020-09, Vol.12 (1), p.56-56, Article 56 [Peer Reviewed Journal]

The Author(s) 2020 ;COPYRIGHT 2020 BioMed Central Ltd. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-020-00460-5 ;PMID: 33431035

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9
Could graph neural networks learn better molecular representation for drug discovery? A comparison study of descriptor-based and graph-based models
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Could graph neural networks learn better molecular representation for drug discovery? A comparison study of descriptor-based and graph-based models

Journal of cheminformatics, 2021-02, Vol.13 (1), p.12-12, Article 12 [Peer Reviewed Journal]

The Author(s) 2021 ;COPYRIGHT 2021 BioMed Central Ltd. ;The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-020-00479-8 ;PMID: 33597034

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10
Multi-objective de novo drug design with conditional graph generative model
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Multi-objective de novo drug design with conditional graph generative model

Journal of cheminformatics, 2018-07, Vol.10 (1), p.33-33, Article 33 [Peer Reviewed Journal]

The Author(s) 2018 ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-018-0287-6 ;PMID: 30043127

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11
Molecular generative model based on conditional variational autoencoder for de novo molecular design
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Molecular generative model based on conditional variational autoencoder for de novo molecular design

Journal of cheminformatics, 2018-07, Vol.10 (1), p.31-9, Article 31 [Peer Reviewed Journal]

The Author(s) 2018 ;COPYRIGHT 2018 BioMed Central Ltd. ;Journal of Cheminformatics is a copyright of Springer, (2018). All Rights Reserved. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-018-0286-7 ;PMID: 29995272

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12
Review on natural products databases: where to find data in 2020
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Article
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Review on natural products databases: where to find data in 2020

Journal of cheminformatics, 2020-04, Vol.12 (1), p.20-20, Article 20 [Peer Reviewed Journal]

The Author(s) 2020 ;COPYRIGHT 2020 BioMed Central Ltd. ;The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-020-00424-9 ;PMID: 33431011

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13
PyBioMed: a python library for various molecular representations of chemicals, proteins and DNAs and their interactions
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PyBioMed: a python library for various molecular representations of chemicals, proteins and DNAs and their interactions

Journal of cheminformatics, 2018-03, Vol.10 (1), p.16-16, Article 16 [Peer Reviewed Journal]

The Author(s) 2018 ;COPYRIGHT 2018 BioMed Central Ltd. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-018-0270-2 ;PMID: 29556758

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14
COCONUT online: Collection of Open Natural Products database
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COCONUT online: Collection of Open Natural Products database

Journal of cheminformatics, 2021-01, Vol.13 (1), p.2-2, Article 2 [Peer Reviewed Journal]

The Author(s) 2021 ;COPYRIGHT 2021 BioMed Central Ltd. ;The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-020-00478-9 ;PMID: 33423696

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15
Why is Tanimoto index an appropriate choice for fingerprint-based similarity calculations?
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Article
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Why is Tanimoto index an appropriate choice for fingerprint-based similarity calculations?

Journal of cheminformatics, 2015-05, Vol.7 (1), p.20-20, Article 20 [Peer Reviewed Journal]

Bajusz et al. 2015. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver ( ) applies to the data made available in this article, unless otherwise stated. ;Journal of Cheminformatics is a copyright of Springer, 2015. ;Bajusz et al. 2015 ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-015-0069-3 ;PMID: 26052348

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16
An open source chemical structure curation pipeline using RDKit
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Article
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An open source chemical structure curation pipeline using RDKit

Journal of cheminformatics, 2020-09, Vol.12 (1), p.51-51, Article 51 [Peer Reviewed Journal]

The Author(s) 2020 ;COPYRIGHT 2020 BioMed Central Ltd. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-020-00456-1 ;PMID: 33431044

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17
ADMETlab: a platform for systematic ADMET evaluation based on a comprehensively collected ADMET database
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Article
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ADMETlab: a platform for systematic ADMET evaluation based on a comprehensively collected ADMET database

Journal of cheminformatics, 2018-06, Vol.10 (1), p.29-11, Article 29 [Peer Reviewed Journal]

The Author(s) 2018 ;COPYRIGHT 2018 BioMed Central Ltd. ;Journal of Cheminformatics is a copyright of Springer, (2018). All Rights Reserved. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-018-0283-x ;PMID: 29943074

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18
Open Babel: An open chemical toolbox
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Article
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Open Babel: An open chemical toolbox

Journal of cheminformatics, 2011-10, Vol.3 (1), p.33-33, Article 33 [Peer Reviewed Journal]

O'Boyle et al; licensee Chemistry Central Ltd. 2011. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ;COPYRIGHT 2011 BioMed Central Ltd. ;2011 O'Boyle et al; licensee Chemistry Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ;Copyright ©2011 O'Boyle et al; licensee Chemistry Central Ltd. 2011 O'Boyle et al; licensee Chemistry Central Ltd. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/1758-2946-3-33 ;PMID: 21982300

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19
The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching
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The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching

Journal of cheminformatics, 2017-06, Vol.9 (1), p.33-19, Article 33 [Peer Reviewed Journal]

The Author(s) 2017 ;COPYRIGHT 2017 BioMed Central Ltd. ;Journal of Cheminformatics is a copyright of Springer, (2017). All Rights Reserved. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-017-0220-4 ;PMID: 29086040

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20
The CompTox Chemistry Dashboard: a community data resource for environmental chemistry
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Article
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The CompTox Chemistry Dashboard: a community data resource for environmental chemistry

Journal of cheminformatics, 2017-11, Vol.9 (1), p.61-27, Article 61 [Peer Reviewed Journal]

The Author(s) 2017 ;COPYRIGHT 2017 BioMed Central Ltd. ;Journal of Cheminformatics is a copyright of Springer, (2017). All Rights Reserved. © 2017. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1758-2946 ;EISSN: 1758-2946 ;DOI: 10.1186/s13321-017-0247-6 ;PMID: 29185060

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