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1
Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python
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Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python

AMIA ... Annual Symposium proceedings, 2021, Vol.2021, p.438-447 [Peer Reviewed Journal]

2021 AMIA - All rights reserved. ;2021 AMIA - All rights reserved. 2021 ;EISSN: 1942-597X ;PMID: 35308962

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2
Drug repurposing: progress, challenges and recommendations
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Drug repurposing: progress, challenges and recommendations

Nature reviews. Drug discovery, 2019-01, Vol.18 (1), p.41-58 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;Copyright Nature Publishing Group Jan 2019 ;ISSN: 1474-1776 ;EISSN: 1474-1784 ;DOI: 10.1038/nrd.2018.168 ;PMID: 30310233

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3
Natural Language Processing: Its Potential Role in Clinical Care and Clinical Research
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Natural Language Processing: Its Potential Role in Clinical Care and Clinical Research

Schizophrenia bulletin, 2022-09, Vol.48 (5), p.958-959 [Peer Reviewed Journal]

Published by Oxford University Press on behalf of the Maryland Psychiatric Research Center 2022. 2022 ;ISSN: 0586-7614 ;EISSN: 1745-1701 ;DOI: 10.1093/schbul/sbac092 ;PMID: 35849122

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4
AI am a rheumatologist: a practical primer to large language models for rheumatologists
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AI am a rheumatologist: a practical primer to large language models for rheumatologists

Rheumatology (Oxford, England), 2023-10, Vol.62 (10), p.3256-3260 [Peer Reviewed Journal]

The Author(s) 2023. Published by Oxford University Press on behalf of the British Society for Rheumatology. 2023 ;ISSN: 1462-0324 ;EISSN: 1462-0332 ;DOI: 10.1093/rheumatology/kead291

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5
Automated methods for the summarization of electronic health records
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Automated methods for the summarization of electronic health records

Journal of the American Medical Informatics Association : JAMIA, 2015-09, Vol.22 (5), p.938-947 [Peer Reviewed Journal]

The Author 2015. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. 2015 ;The Author 2015. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocv032 ;PMID: 25882031

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6
Natural Language Processing and Psychosis: On the Need for Comprehensive Psychometric Evaluation
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Natural Language Processing and Psychosis: On the Need for Comprehensive Psychometric Evaluation

Schizophrenia bulletin, 2022-09, Vol.48 (5), p.939-948 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press on behalf of the Maryland Psychiatric Research Center. All rights reserved. For permissions, please email: journals.permissions@oup.com 2022 ;The Author(s) 2022. Published by Oxford University Press on behalf of the Maryland Psychiatric Research Center. All rights reserved. For permissions, please email: journals.permissions@oup.com. ;info:eu-repo/semantics/openAccess ;ISSN: 0586-7614 ;ISSN: 1745-1701 ;EISSN: 1745-1701 ;DOI: 10.1093/schbul/sbac051 ;PMID: 35738008

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7
BioGPT: generative pre-trained transformer for biomedical text generation and mining
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BioGPT: generative pre-trained transformer for biomedical text generation and mining

Briefings in bioinformatics, 2022-11, Vol.23 (6) [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;ISSN: 1467-5463 ;EISSN: 1477-4054 ;DOI: 10.1093/bib/bbac409 ;PMID: 36156661

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8
A comprehensive study of named entity recognition in Chinese clinical text
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A comprehensive study of named entity recognition in Chinese clinical text

Journal of the American Medical Informatics Association : JAMIA, 2014-09, Vol.21 (5), p.808-814 [Peer Reviewed Journal]

Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions. ;Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions 2014 ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1136/amiajnl-2013-002381 ;PMID: 24347408

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9
Community challenges in biomedical text mining over 10 years: success, failure and the future
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Community challenges in biomedical text mining over 10 years: success, failure and the future

Briefings in bioinformatics, 2016-01, Vol.17 (1), p.132-144 [Peer Reviewed Journal]

Published by Oxford University Press 2015. This work is written by US Government employees and is in the public domain in the US. ;Published by Oxford University Press 2015. This work is written by US Government employees and is in the public domain in the US. 2015 ;ISSN: 1467-5463 ;EISSN: 1477-4054 ;DOI: 10.1093/bib/bbv024 ;PMID: 25935162

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10
Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources
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Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources

Journal of the American Medical Informatics Association : JAMIA, 2015-09, Vol.22 (5), p.993-1000 [Peer Reviewed Journal]

The Author 2015. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2015 ;The Author 2015. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocv034 ;PMID: 25929596

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11
MERIT: M inimal Sup E rvision Through Label Augmentation for Biomedical RelatIon Ex T raction
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MERIT: M inimal Sup E rvision Through Label Augmentation for Biomedical RelatIon Ex T raction

AMIA ... Annual Symposium proceedings, 2022, Vol.2022, p.425 [Peer Reviewed Journal]

2022 AMIA - All rights reserved. ;EISSN: 1942-597X ;PMID: 37128402

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12
Towards User-centered Corpus Development: Lessons Learnt from Designing and Developing MedTator
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Towards User-centered Corpus Development: Lessons Learnt from Designing and Developing MedTator

AMIA ... Annual Symposium proceedings, 2022, Vol.2022, p.532-541 [Peer Reviewed Journal]

2022 AMIA - All rights reserved. ;EISSN: 1942-597X ;PMID: 37128369

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13
Computer science: The learning machines
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Computer science: The learning machines

Nature (London), 2014-01, Vol.505 (7482), p.146-148 [Peer Reviewed Journal]

ISSN: 0028-0836 ;EISSN: 1476-4687 ;DOI: 10.1038/505146a ;PMID: 24402264

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14
Capturing the Patient’s Perspective: a Review of Advances in Natural Language Processing of Health-Related Text
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Capturing the Patient’s Perspective: a Review of Advances in Natural Language Processing of Health-Related Text

Yearbook of medical informatics, 2017-08, Vol.26 (1), p.214-227

Thieme Medical Publishers ;ISSN: 0943-4747 ;EISSN: 2364-0502 ;DOI: 10.15265/IY-2017-029 ;PMID: 29063568

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15
A comparative study of pretrained language models for long clinical text
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A comparative study of pretrained language models for long clinical text

Journal of the American Medical Informatics Association : JAMIA, 2023-01, Vol.30 (2), p.340-347 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com. ;The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com 2022 ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocac225 ;PMID: 36451266

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16
MIMIC-CXR, a de-identified publicly available database of chest radiographs with free-text reports
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MIMIC-CXR, a de-identified publicly available database of chest radiographs with free-text reports

Scientific data, 2019-12, Vol.6 (1), p.317-8, Article 317 [Peer Reviewed Journal]

2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 2052-4463 ;EISSN: 2052-4463 ;DOI: 10.1038/s41597-019-0322-0 ;PMID: 31831740

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17
Recent Advances in Using Natural Language Processing to Address Public Health Research Questions Using Social Media and ConsumerGenerated Data
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Recent Advances in Using Natural Language Processing to Address Public Health Research Questions Using Social Media and ConsumerGenerated Data

Yearbook of medical informatics, 2019-08, Vol.28 (1), p.208-217

ISSN: 0943-4747 ;EISSN: 2364-0502 ;DOI: 10.1055/s-0039-1677918 ;PMID: 31419834

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18
Clinical trial cohort selection based on multi-level rule-based natural language processing system
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Clinical trial cohort selection based on multi-level rule-based natural language processing system

Journal of the American Medical Informatics Association : JAMIA, 2019-11, Vol.26 (11), p.1218-1226 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com. ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocz109 ;PMID: 31300825

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19
Medical Information Extraction in the Age of Deep Learning
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Medical Information Extraction in the Age of Deep Learning

Yearbook of medical informatics, 2020-08, Vol.29 (1), p.208-220

ISSN: 0943-4747 ;EISSN: 2364-0502 ;DOI: 10.1055/s-0040-1702001 ;PMID: 32823318

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20
Extracting medications and associated adverse drug events using a natural language processing system combining knowledge base and deep learning
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Extracting medications and associated adverse drug events using a natural language processing system combining knowledge base and deep learning

Journal of the American Medical Informatics Association : JAMIA, 2020-01, Vol.27 (1), p.56-64 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com. ;ISSN: 1527-974X ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocz141 ;PMID: 31591641

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