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1
Nigella sativa Extract as a Potent Antioxidant for Petrochemical-Induced Oxidative Stress
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Nigella sativa Extract as a Potent Antioxidant for Petrochemical-Induced Oxidative Stress

Journal of chromatographic science, 2011-04, Vol.49 (4), p.321-326 [Peer Reviewed Journal]

2015 INIST-CNRS ;ISSN: 0021-9665 ;EISSN: 1945-239X ;DOI: 10.1093/chrsci/49.4.321 ;CODEN: JCHSBZ

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2
An expanded Notch-Delta model exhibiting long-range patterning and incorporating MicroRNA regulation
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An expanded Notch-Delta model exhibiting long-range patterning and incorporating MicroRNA regulation

PLoS computational biology, 2014-06, Vol.10 (6), p.e1003655-e1003655 [Peer Reviewed Journal]

COPYRIGHT 2014 Public Library of Science ;COPYRIGHT 2014 Public Library of Science ;2014 Chen et al 2014 Chen et al ;2014 Chen et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Chen JS, Gumbayan AM, Zeller RW, Mahaffy JM (2014) An Expanded Notch-Delta Model Exhibiting Long-Range Patterning and Incorporating MicroRNA Regulation. PLoS Comput Biol 10(6): e1003655. doi:10.1371/journal.pcbi.1003655 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1003655 ;PMID: 24945987

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3
An agar-microchamber cell-cultivation system: flexible change of microchamber shapes during cultivation by photo-thermal etching
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An agar-microchamber cell-cultivation system: flexible change of microchamber shapes during cultivation by photo-thermal etching

Lab on a chip, 2002-05, Vol.2 (2), p.125-132 [Peer Reviewed Journal]

ISSN: 1473-0197 ;EISSN: 1473-0189 ;DOI: 10.1039/b202569h ;PMID: 15100846

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4
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
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GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

Bioinformatics, 2019-11, Vol.36 (6), p.1925-1927 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz848 ;PMID: 31730192

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5
GTDB-Tk v2: memory friendly classification with the genome taxonomy database
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GTDB-Tk v2: memory friendly classification with the genome taxonomy database

Bioinformatics (Oxford, England), 2022-11, Vol.38 (23), p.5315-5316 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press. ;The Author(s) 2022. Published by Oxford University Press. 2022 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btac672 ;PMID: 36218463

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6
GraphDTA: predicting drug–target binding affinity with graph neural networks
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GraphDTA: predicting drug–target binding affinity with graph neural networks

Bioinformatics, 2021-05, Vol.37 (8), p.1140-1147 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2020 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa921

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7
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

Bioinformatics, 2020-02, Vol.36 (4), p.1234-1240 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz682 ;PMID: 31501885

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8
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

Bioinformatics, 2019-11, Vol.35 (21), p.4453-4455 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz305 ;PMID: 31070718

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9
Scaling tree-based automated machine learning to biomedical big data with a feature set selector
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Scaling tree-based automated machine learning to biomedical big data with a feature set selector

Bioinformatics, 2020-01, Vol.36 (1), p.250-256 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz470 ;PMID: 31165141

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10
fastp: an ultra-fast all-in-one FASTQ preprocessor
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fastp: an ultra-fast all-in-one FASTQ preprocessor

Bioinformatics, 2018-09, Vol.34 (17), p.i884-i890 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty560 ;PMID: 30423086

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11
Minimap2: pairwise alignment for nucleotide sequences
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Minimap2: pairwise alignment for nucleotide sequences

Bioinformatics, 2018-09, Vol.34 (18), p.3094-3100 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty191 ;PMID: 29750242

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12
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
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ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

Bioinformatics, 2019-02, Vol.35 (3), p.526-528 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2018 ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty633 ;PMID: 30016406

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13
TISIDB: an integrated repository portal for tumor–immune system interactions
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TISIDB: an integrated repository portal for tumor–immune system interactions

Bioinformatics, 2019-10, Vol.35 (20), p.4200-4202 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2019 ;The Author(s) (2019). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz210 ;PMID: 30903160

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14
Compound-protein interaction prediction with end-to-end learning of neural networks for graphs and sequences
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Compound-protein interaction prediction with end-to-end learning of neural networks for graphs and sequences

Bioinformatics, 2019-01, Vol.35 (2), p.309-318 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty535 ;PMID: 29982330

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15
ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes
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ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes

Bioinformatics, 2018-07, Vol.34 (13), p.2263-2270 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty053 ;PMID: 29408954

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16
Nextstrain: real-time tracking of pathogen evolution
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Nextstrain: real-time tracking of pathogen evolution

Bioinformatics, 2018-12, Vol.34 (23), p.4121-4123 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty407 ;PMID: 29790939

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17
Identifying and removing haplotypic duplication in primary genome assemblies
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Identifying and removing haplotypic duplication in primary genome assemblies

Bioinformatics, 2020-05, Vol.36 (9), p.2896-2898 [Peer Reviewed Journal]

The Author(s) 2020. Published by Oxford University Press. 2020 ;The Author(s) 2020. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btaa025 ;PMID: 31971576

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18
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold
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KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold

Bioinformatics, 2020-04, Vol.36 (7), p.2251-2252 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz859 ;PMID: 31742321

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19
The lncLocator: a subcellular localization predictor for long non-coding RNAs based on a stacked ensemble classifier
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The lncLocator: a subcellular localization predictor for long non-coding RNAs based on a stacked ensemble classifier

Bioinformatics, 2018-07, Vol.34 (13), p.2185-2194 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty085 ;PMID: 29462250

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20
VarSome: the human genomic variant search engine
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VarSome: the human genomic variant search engine

Bioinformatics (Oxford, England), 2019-06, Vol.35 (11), p.1978-1980 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. ;The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty897 ;PMID: 30376034

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