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Material Type: Article
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Museum of spatial transcriptomicsNature methods, 2022-05, Vol.19 (5), p.534-546 [Peer Reviewed Journal]2022. Springer Nature America, Inc. ;Springer Nature America, Inc. 2022. corrected publication 2022. ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-022-01409-2 ;PMID: 35273392Full text available |
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Material Type: Article
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UCSF ChimeraX: Structure visualization for researchers, educators, and developersProtein science, 2021-01, Vol.30 (1), p.70-82 [Peer Reviewed Journal]2020 The Protein Society ;2020 The Protein Society. ;2021 The Protein Society ;ISSN: 0961-8368 ;EISSN: 1469-896X ;DOI: 10.1002/pro.3943 ;PMID: 32881101Full text available |
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3 |
Material Type: Article
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Benchmarking spatial and single-cell transcriptomics integration methods for transcript distribution prediction and cell type deconvolutionNature methods, 2022-06, Vol.19 (6), p.662-670 [Peer Reviewed Journal]2022. The Author(s), under exclusive licence to Springer Nature America, Inc. ;The Author(s), under exclusive licence to Springer Nature America, Inc. 2022. ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-022-01480-9 ;PMID: 35577954Full text available |
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4 |
Material Type: Article
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Fast, sensitive and accurate integration of single-cell data with HarmonyNature methods, 2019-12, Vol.16 (12), p.1289-1296 [Peer Reviewed Journal]COPYRIGHT 2019 Nature Publishing Group ;The Author(s), under exclusive licence to Springer Nature America, Inc. 2019. ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-019-0619-0 ;PMID: 31740819Full text available |
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5 |
Material Type: Article
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Noncoding RNA:RNA Regulatory Networks in CancerInternational journal of molecular sciences, 2018-04, Vol.19 (5), p.1310 [Peer Reviewed Journal]Copyright MDPI AG 2018 ;2018 by the authors. 2018 ;ISSN: 1422-0067 ;ISSN: 1661-6596 ;EISSN: 1422-0067 ;DOI: 10.3390/ijms19051310 ;PMID: 29702599Full text available |
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6 |
Material Type: Article
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scmap: projection of single-cell RNA-seq data across data setsNature methods, 2018-05, Vol.15 (5), p.359-362 [Peer Reviewed Journal]COPYRIGHT 2018 Nature Publishing Group ;Copyright Nature Publishing Group May 2018 ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/nmeth.4644 ;PMID: 29608555Full text available |
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7 |
Material Type: Article
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Maftools: efficient and comprehensive analysis of somatic variants in cancerGenome research, 2018-11, Vol.28 (11), p.1747-1756 [Peer Reviewed Journal]2018 Mayakonda et al.; Published by Cold Spring Harbor Laboratory Press. ;Copyright Cold Spring Harbor Laboratory Press Nov 2018 ;2018 ;ISSN: 1088-9051 ;EISSN: 1549-5469 ;DOI: 10.1101/gr.239244.118 ;PMID: 30341162Full text available |
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8 |
Material Type: Article
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Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstructionNature methods, 2020-12, Vol.17 (12), p.1214-1221 [Peer Reviewed Journal]COPYRIGHT 2020 Nature Publishing Group ;The Author(s), under exclusive licence to Springer Nature America, Inc. 2020. ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-020-00990-8 ;PMID: 33257830Full text available |
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9 |
Material Type: Article
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NicheNet: modeling intercellular communication by linking ligands to target genesNature methods, 2020-02, Vol.17 (2), p.159-162 [Peer Reviewed Journal]COPYRIGHT 2020 Nature Publishing Group ;2019© The Author(s), under exclusive licence to Springer Nature America, Inc. 2019 ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-019-0667-5 ;PMID: 31819264Full text available |
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10 |
Material Type: Article
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Graph convolutional networks for computational drug development and discoveryBriefings in bioinformatics, 2020-05, Vol.21 (3), p.919-935 [Peer Reviewed Journal]The Author(s) 2019. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2019 ;The Author(s) 2019. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;The Author(s) 2019. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com ;ISSN: 1467-5463 ;EISSN: 1477-4054 ;DOI: 10.1093/bib/bbz042 ;PMID: 31155636Full text available |
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11 |
Material Type: Article
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ASAP: assemble species by automatic partitioningMolecular ecology resources, 2021-02, Vol.21 (2) [Peer Reviewed Journal]Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1755-098X ;EISSN: 1755-0998 ;DOI: 10.1111/1755-0998.13281Digital Resources/Online E-Resources |
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12 |
Material Type: Article
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Predicting drug–disease associations through layer attention graph convolutional networkBriefings in bioinformatics, 2021-07, Vol.22 (4) [Peer Reviewed Journal]The Author(s) 2020. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2020 ;The Author(s) 2020. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com ;ISSN: 1467-5463 ;EISSN: 1477-4054 ;DOI: 10.1093/bib/bbaa243Full text available |
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13 |
Material Type: Article
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Transcriptional Regulation by Nrf2Antioxidants & redox signaling, 2018-12, Vol.29 (17), p.1727-1745 [Peer Reviewed Journal]Copyright Mary Ann Liebert, Inc. Dec 10, 2018 ;Claudia Tonelli , 2017; Published by Mary Ann Liebert, Inc. 2017 ;ISSN: 1523-0864 ;EISSN: 1557-7716 ;DOI: 10.1089/ars.2017.7342 ;PMID: 28899199Full text available |
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14 |
Material Type: Article
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A structural biology community assessment of AlphaFold2 applicationsNature structural & molecular biology, 2022-11, Vol.29 (11), p.1056-1067 [Peer Reviewed Journal]2022. The Author(s). ;The Author(s) 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Distributed under a Creative Commons Attribution 4.0 International License ;The Author(s) 2022 ;ISSN: 1545-9993 ;EISSN: 1545-9985 ;DOI: 10.1038/s41594-022-00849-w ;PMID: 36344848Full text available |
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15 |
Material Type: Article
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Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographsNature methods, 2019-11, Vol.16 (11), p.1153-1160 [Peer Reviewed Journal]COPYRIGHT 2019 Nature Publishing Group ;Copyright Nature Publishing Group Nov 2019 ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-019-0575-8 ;PMID: 31591578Full text available |
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16 |
Material Type: Article
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ilastik: interactive machine learning for (bio)image analysisNature methods, 2019-12, Vol.16 (12), p.1226-1232 [Peer Reviewed Journal]COPYRIGHT 2019 Nature Publishing Group ;Copyright Nature Publishing Group Dec 2019 ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-019-0582-9 ;PMID: 31570887Full text available |
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17 |
Material Type: Article
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Improvements to the APBS biomolecular solvation software suiteProtein science, 2018-01, Vol.27 (1), p.112-128 [Peer Reviewed Journal]2017 The Protein Society ;2017 The Protein Society. ;2018 The Protein Society ;ISSN: 0961-8368 ;EISSN: 1469-896X ;DOI: 10.1002/pro.3280 ;PMID: 28836357Full text available |
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18 |
Material Type: Article
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A computational framework to explore large-scale biosynthetic diversityNature chemical biology, 2020-01, Vol.16 (1), p.60-68 [Peer Reviewed Journal]Copyright Nature Publishing Group Jan 2020 ;ISSN: 1552-4450 ;EISSN: 1552-4469 ;DOI: 10.1038/s41589-019-0400-9 ;PMID: 31768033Full text available |
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19 |
Material Type: Article
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Metagenome analysis using the Kraken software suiteNature protocols, 2022-12, Vol.17 (12), p.2815-2839 [Peer Reviewed Journal]Springer Nature Limited 2022. Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. ;ISSN: 1754-2189 ;EISSN: 1750-2799 ;DOI: 10.1038/s41596-022-00738-y ;PMID: 36171387Full text available |
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20 |
Material Type: Article
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CellProfiler 4: improvements in speed, utility and usabilityBMC bioinformatics, 2021-09, Vol.22 (1), p.1-433, Article 433 [Peer Reviewed Journal]COPYRIGHT 2021 BioMed Central Ltd. ;2021. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2021 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-021-04344-9 ;PMID: 34507520Full text available |