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Material Type: Article
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CRIMSON: An open-source software framework for cardiovascular integrated modelling and simulationPLoS computational biology, 2021-05, Vol.17 (5), p.e1008881-e1008881 [Peer Reviewed Journal]COPYRIGHT 2021 Public Library of Science ;2021 Arthurs et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2021 Arthurs et al 2021 Arthurs et al ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1008881 ;PMID: 33970900Full text available |
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Computational prediction of drug response in short QT syndrome type 1 based on measurements of compound effect in stem cell-derived cardiomyocytesPLoS computational biology, 2021-02, Vol.17 (2), p.e1008089-e1008089 [Peer Reviewed Journal]2021 Jæger et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2021 Jæger et al 2021 Jæger et al ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1008089 ;PMID: 33591962Full text available |
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Predictive model identifies key network regulators of cardiomyocyte mechano-signalingPLoS computational biology, 2017-11, Vol.13 (11), p.e1005854-e1005854 [Peer Reviewed Journal]COPYRIGHT 2017 Public Library of Science ;COPYRIGHT 2017 Public Library of Science ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Tan PM, Buchholz KS, Omens JH, McCulloch AD, Saucerman JJ (2017) Predictive model identifies key network regulators of cardiomyocyte mechano-signaling. PLoS Comput Biol 13(11): e1005854. https://doi.org/10.1371/journal.pcbi.1005854 ;2017 Tan et al 2017 Tan et al ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Tan PM, Buchholz KS, Omens JH, McCulloch AD, Saucerman JJ (2017) Predictive model identifies key network regulators of cardiomyocyte mechano-signaling. PLoS Comput Biol 13(11): e1005854. https://doi.org/10.1371/journal.pcbi.1005854 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005854 ;PMID: 29131824Full text available |
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A method to quantify mechanobiologic forces during zebrafish cardiac development using 4-D light sheet imaging and computational modelingPLoS computational biology, 2017-10, Vol.13 (10), p.e1005828-e1005828 [Peer Reviewed Journal]COPYRIGHT 2017 Public Library of Science ;COPYRIGHT 2017 Public Library of Science ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Vedula V, Lee J, Xu H, Kuo C-CJ, Hsiai TK, Marsden AL (2017) A method to quantify mechanobiologic forces during zebrafish cardiac development using 4-D light sheet imaging and computational modeling. PLoS Comput Biol13(10): e1005828. https://doi.org/10.1371/journal.pcbi.1005828 ;2017 Vedula et al 2017 Vedula et al ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Vedula V, Lee J, Xu H, Kuo C-CJ, Hsiai TK, Marsden AL (2017) A method to quantify mechanobiologic forces during zebrafish cardiac development using 4-D light sheet imaging and computational modeling. PLoS Comput Biol13(10): e1005828. https://doi.org/10.1371/journal.pcbi.1005828 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005828 ;PMID: 29084212Full text available |
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Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variationPLoS computational biology, 2023-07, Vol.19 (7), p.e1011286-e1011286 [Peer Reviewed Journal]Copyright: © 2023 Baur et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ;COPYRIGHT 2023 Public Library of Science ;2023 Baur et al 2023 Baur et al ;2023 Baur et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1011286 ;PMID: 37428809Full text available |
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Mathematical modeling to understand the role of bivalent thrombin-fibrin binding during polymerizationPLoS computational biology, 2022-09, Vol.18 (9), p.e1010414-e1010414 [Peer Reviewed Journal]COPYRIGHT 2022 Public Library of Science ;2022 Kelley, Leiderman 2022 Kelley, Leiderman ;2022 Kelley, Leiderman. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1010414 ;PMID: 36107837Full text available |
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Material Type: Article
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Increased A-to-I RNA editing in atherosclerosis and cardiomyopathiesPLoS computational biology, 2023-04, Vol.19 (4), p.e1010923-e1010923 [Peer Reviewed Journal]Copyright: © 2023 Mann et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ;COPYRIGHT 2023 Public Library of Science ;2023 Mann et al 2023 Mann et al ;2023 Mann et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1010923 ;PMID: 37036839Full text available |
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A computational model of spatio-temporal cardiac intracellular calcium handling with realistic structure and spatial flux distribution from sarcoplasmic reticulum and t-tubule reconstructionsPLoS computational biology, 2017-08, Vol.13 (8), p.e1005714-e1005714 [Peer Reviewed Journal]COPYRIGHT 2017 Public Library of Science ;COPYRIGHT 2017 Public Library of Science ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Colman MA, Pinali C, Trafford AW, Zhang H, Kitmitto A (2017) A computational model of spatio-temporal cardiac intracellular calcium handling with realistic structure and spatial flux distribution from sarcoplasmic reticulum and t-tubule reconstructions. PLoS Comput Biol 13(8): e1005714. https://doi.org/10.1371/journal.pcbi.1005714 ;2017 Colman et al 2017 Colman et al ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Colman MA, Pinali C, Trafford AW, Zhang H, Kitmitto A (2017) A computational model of spatio-temporal cardiac intracellular calcium handling with realistic structure and spatial flux distribution from sarcoplasmic reticulum and t-tubule reconstructions. PLoS Comput Biol 13(8): e1005714. https://doi.org/10.1371/journal.pcbi.1005714 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005714 ;PMID: 28859079Full text available |
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Material Type: Article
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Measurable health effects associated with the daylight saving time shiftPLoS computational biology, 2020-06, Vol.16 (6), p.e1007927-e1007927 [Peer Reviewed Journal]COPYRIGHT 2020 Public Library of Science ;COPYRIGHT 2020 Public Library of Science ;2020 Zhang et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2020 Zhang et al 2020 Zhang et al ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1007927 ;PMID: 32511231Full text available |
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Material Type: Article
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A computational model of pig ventricular cardiomyocyte electrophysiology and calcium handling: Translation from pig to human electrophysiologyPLoS computational biology, 2021-06, Vol.17 (6), p.e1009137-e1009137 [Peer Reviewed Journal]COPYRIGHT 2021 Public Library of Science ;2021 Gaur et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2021 Gaur et al 2021 Gaur et al ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1009137 ;PMID: 34191797Full text available |
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Material Type: Article
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Self-organization of conducting pathways explains electrical wave propagation in cardiac tissues with high fraction of non-conducting cellsPLoS computational biology, 2019-03, Vol.15 (3), p.e1006597-e1006597 [Peer Reviewed Journal]COPYRIGHT 2019 Public Library of Science ;COPYRIGHT 2019 Public Library of Science ;2019 Kudryashova et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2019 Kudryashova et al 2019 Kudryashova et al ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1006597 ;PMID: 30883540Full text available |
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Use of Angiotensin-Converting Enzyme Inhibitors and Angiotensin II Receptor Blockers During the COVID-19 Pandemic: A Modeling AnalysisPLoS computational biology, 2020-10, Vol.16 (10), p.e1008235-e1008235 [Peer Reviewed Journal]COPYRIGHT 2020 Public Library of Science ;COPYRIGHT 2020 Public Library of Science ;2020 Sadria, Layton. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2020 Sadria, Layton 2020 Sadria, Layton ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1008235 ;PMID: 33031368Full text available |
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Microheterogeneity-induced conduction slowing and wavefront collisions govern macroscopic conduction behavior: A computational and experimental studyPLoS computational biology, 2018-07, Vol.14 (7), p.e1006276-e1006276 [Peer Reviewed Journal]COPYRIGHT 2018 Public Library of Science ;COPYRIGHT 2018 Public Library of Science ;2018 Gokhale et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2018 Gokhale et al 2018 Gokhale et al ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1006276 ;PMID: 30011279Full text available |
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A model for cooperative gating of L-type Ca2+ channels and its effects on cardiac alternans dynamicsPLoS computational biology, 2018-01, Vol.14 (1), p.e1005906-e1005906 [Peer Reviewed Journal]2018 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: channels and its effects on cardiac alternans dynamics. PLoS Comput Biol 14(1): e1005906. https://doi.org/10.1371/journal.pcbi.1005906 ;2018 Sato et al 2018 Sato et al ;2018 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: channels and its effects on cardiac alternans dynamics. PLoS Comput Biol 14(1): e1005906. https://doi.org/10.1371/journal.pcbi.1005906 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005906 ;PMID: 29338006Full text available |
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Material Type: Article
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Allosteric modulation of cardiac myosin dynamics by omecamtiv mecarbilPLoS computational biology, 2017-11, Vol.13 (11), p.e1005826-e1005826 [Peer Reviewed Journal]COPYRIGHT 2017 Public Library of Science ;COPYRIGHT 2017 Public Library of Science ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Hashem S, Tiberti M, Fornili A (2017) Allosteric modulation of cardiac myosin dynamics by omecamtiv mecarbil. PLoS Comput Biol 13(11): e1005826. https://doi.org/10.1371/journal.pcbi.1005826 ;2017 Hashem et al 2017 Hashem et al ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Hashem S, Tiberti M, Fornili A (2017) Allosteric modulation of cardiac myosin dynamics by omecamtiv mecarbil. PLoS Comput Biol 13(11): e1005826. https://doi.org/10.1371/journal.pcbi.1005826 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005826 ;PMID: 29108014Full text available |
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Estimating the probabilities of rare arrhythmic events in multiscale computational models of cardiac cells and tissuePLoS computational biology, 2017-11, Vol.13 (11), p.e1005783-e1005783 [Peer Reviewed Journal]COPYRIGHT 2017 Public Library of Science ;COPYRIGHT 2017 Public Library of Science ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Walker MA, Gurev V, Rice JJ, Greenstein JL, Winslow RL (2017) Estimating the probabilities of rare arrhythmic events in multiscale computational models of cardiac cells and tissue. PLoS Comput Biol 13(11): e1005783. https://doi.org/10.1371/journal.pcbi.1005783 ;2017 Walker et al 2017 Walker et al ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Walker MA, Gurev V, Rice JJ, Greenstein JL, Winslow RL (2017) Estimating the probabilities of rare arrhythmic events in multiscale computational models of cardiac cells and tissue. PLoS Comput Biol 13(11): e1005783. https://doi.org/10.1371/journal.pcbi.1005783 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005783 ;PMID: 29145393Full text available |
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Stabilization of diastolic calcium signal via calcium pump regulation of complex local calcium releases and transient decay in a computational model of cardiac pacemaker cell with individual release channelsPLoS computational biology, 2017-08, Vol.13 (8), p.e1005675-e1005675 [Peer Reviewed Journal]COPYRIGHT 2017 Public Library of Science ;COPYRIGHT 2017 Public Library of Science ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Maltsev AV, Maltsev VA, Stern MD (2017) Stabilization of diastolic calcium signal via calcium pump regulation of complex local calcium releases and transient decay in a computational model of cardiac pacemaker cell with individual release channels. PLoS Comput Biol 13(8): e1005675. https://doi.org/10.1371/journal.pcbi.1005675 ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Maltsev AV, Maltsev VA, Stern MD (2017) Stabilization of diastolic calcium signal via calcium pump regulation of complex local calcium releases and transient decay in a computational model of cardiac pacemaker cell with individual release channels. PLoS Comput Biol 13(8): e1005675. https://doi.org/10.1371/journal.pcbi.1005675 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005675 ;PMID: 28792496Full text available |
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In silico study of multicellular automaticity of heterogeneous cardiac cell monolayers: Effects of automaticity strength and structural linear anisotropyPLoS computational biology, 2018-03, Vol.14 (3), p.e1005978-e1005978 [Peer Reviewed Journal]COPYRIGHT 2018 Public Library of Science ;COPYRIGHT 2018 Public Library of Science ;2018 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Duverger JE, Jacquemet V, Vinet A, Comtois P (2018) In silico study of multicellular automaticity of heterogeneous cardiac cell monolayers: Effects of automaticity strength and structural linear anisotropy. PLoS Comput Biol 14(3): e1005978. https://doi.org/10.1371/journal.pcbi.1005978 ;2018 Duverger et al 2018 Duverger et al ;2018 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Duverger JE, Jacquemet V, Vinet A, Comtois P (2018) In silico study of multicellular automaticity of heterogeneous cardiac cell monolayers: Effects of automaticity strength and structural linear anisotropy. PLoS Comput Biol 14(3): e1005978. https://doi.org/10.1371/journal.pcbi.1005978 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005978 ;PMID: 29529023Full text available |
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Mechanisms of ventricular arrhythmias elicited by coexistence of multiple electrophysiological remodeling in ischemia: A simulation studyPLoS computational biology, 2022-04, Vol.18 (4), p.e1009388-e1009388 [Peer Reviewed Journal]COPYRIGHT 2022 Public Library of Science ;2022 Liang et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2022 Liang et al 2022 Liang et al ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1009388 ;PMID: 35476614Full text available |
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Lipid exchange mechanism of the cholesteryl ester transfer protein clarified by atomistic and coarse-grained simulationsPLoS computational biology, 2012-01, Vol.8 (1), p.e1002299-e1002299 [Peer Reviewed Journal]COPYRIGHT 2012 Public Library of Science ;COPYRIGHT 2012 Public Library of Science ;2012 Koivuniemi et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Koivuniemi A, Vuorela T, Kovanen PT, Vattulainen I, Hyvönen MT (2012) Lipid Exchange Mechanism of the Cholesteryl Ester Transfer Protein Clarified by Atomistic and Coarse-grained Simulations. PLoS Comput Biol 8(1): e1002299. doi:10.1371/journal.pcbi.1002299 ;Koivuniemi et al. 2012 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1002299 ;PMID: 22253581Full text available |