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1
Epigenetic therapy induces transcription of inverted SINEs and ADAR1 dependency
Epigenetic therapy induces transcription of inverted SINEs and ADAR1 dependency
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Epigenetic therapy induces transcription of inverted SINEs and ADAR1 dependency

Nature (London), 2020-12, Vol.588 (7836), p.169-173 [Peer Reviewed Journal]

Copyright Nature Publishing Group Dec 3, 2020 ;ISSN: 0028-0836 ;EISSN: 1476-4687 ;DOI: 10.1038/s41586-020-2844-1 ;PMID: 33087935

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2
Gene activation precedes DNA demethylation in response to infection in human dendritic cells
Gene activation precedes DNA demethylation in response to infection in human dendritic cells
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Gene activation precedes DNA demethylation in response to infection in human dendritic cells

Proceedings of the National Academy of Sciences - PNAS, 2019-04, Vol.116 (14), p.6938-6943 [Peer Reviewed Journal]

Copyright © 2019 the Author(s). Published by PNAS. ;Copyright National Academy of Sciences Apr 2, 2019 ;Attribution - NonCommercial - NoDerivatives ;Copyright © 2019 the Author(s). Published by PNAS. 2019 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1814700116 ;PMID: 30886108

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3
H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem cells
H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem cells
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H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem cells

BMC genomics, 2012-08, Vol.13 (1), p.424-424, Article 424 [Peer Reviewed Journal]

COPYRIGHT 2012 BioMed Central Ltd. ;COPYRIGHT 2012 BioMed Central Ltd. ;2012 Karmodiya et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ;Distributed under a Creative Commons Attribution 4.0 International License ;Copyright ©2012 Karmodiya et al.; licensee BioMed Central Ltd. 2012 Karmodiya et al.; licensee BioMed Central Ltd. ;ISSN: 1471-2164 ;EISSN: 1471-2164 ;DOI: 10.1186/1471-2164-13-424 ;PMID: 22920947

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4
DNA methylation loss promotes immune evasion of tumours with high mutation and copy number load
DNA methylation loss promotes immune evasion of tumours with high mutation and copy number load
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DNA methylation loss promotes immune evasion of tumours with high mutation and copy number load

Nature communications, 2019-09, Vol.10 (1), p.4278-12, Article 4278 [Peer Reviewed Journal]

2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-12159-9 ;PMID: 31537801

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5
Correction: CpG island hypermethylation-associated silencing of non-coding RNAs transcribed from ultraconserved regions in human cancer
Correction: CpG island hypermethylation-associated silencing of non-coding RNAs transcribed from ultraconserved regions in human cancer
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Correction: CpG island hypermethylation-associated silencing of non-coding RNAs transcribed from ultraconserved regions in human cancer

Oncogene, 2019-01, Vol.38 (5), p.765-766 [Peer Reviewed Journal]

COPYRIGHT 2019 Nature Publishing Group ;2018. This work is published under http://creativecommons.org/licenses/by-nc-nd/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2018 ;ISSN: 0950-9232 ;EISSN: 1476-5594 ;DOI: 10.1038/s41388-018-0560-1 ;PMID: 30397238

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6
Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling
Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling
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Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling

Genome Biology, 2016-10, Vol.17 (1), p.208-208, Article 208 [Peer Reviewed Journal]

2016. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s). 2016 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-016-1066-1 ;PMID: 27717381

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7
Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma
Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma
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Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma

The New England journal of medicine, 2016-01, Vol.374 (2), p.135-145 [Peer Reviewed Journal]

Copyright © 2015 Massachusetts Medical Society. All rights reserved. ;ISSN: 0028-4793 ;EISSN: 1533-4406 ;DOI: 10.1056/NEJMoa1505917 ;PMID: 26536169

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8
Structure-based programming of lymph-node targeting in molecular vaccines
Structure-based programming of lymph-node targeting in molecular vaccines
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Structure-based programming of lymph-node targeting in molecular vaccines

Nature (London), 2014-03, Vol.507 (7493), p.519-522 [Peer Reviewed Journal]

COPYRIGHT 2014 Nature Publishing Group ;COPYRIGHT 2014 Nature Publishing Group ;Copyright Nature Publishing Group Mar 27, 2014 ;ISSN: 0028-0836 ;EISSN: 1476-4687 ;DOI: 10.1038/nature12978 ;PMID: 24531764 ;CODEN: NATUAS

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9
A DNA methylation atlas of normal human cell types
A DNA methylation atlas of normal human cell types
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A DNA methylation atlas of normal human cell types

Nature (London), 2023-01, Vol.613 (7943), p.355-364 [Peer Reviewed Journal]

2023. The Author(s). ;Copyright Nature Publishing Group Jan 12, 2023 ;The Author(s) 2023 ;ISSN: 0028-0836 ;ISSN: 1476-4687 ;EISSN: 1476-4687 ;DOI: 10.1038/s41586-022-05580-6 ;PMID: 36599988

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10
Functions of DNA methylation: islands, start sites, gene bodies and beyond
Functions of DNA methylation: islands, start sites, gene bodies and beyond
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Functions of DNA methylation: islands, start sites, gene bodies and beyond

Nature reviews. Genetics, 2012-07, Vol.13 (7), p.484-492 [Peer Reviewed Journal]

2015 INIST-CNRS ;COPYRIGHT 2012 Nature Publishing Group ;COPYRIGHT 2012 Nature Publishing Group ;Copyright Nature Publishing Group Jul 2012 ;ISSN: 1471-0056 ;EISSN: 1471-0064 ;DOI: 10.1038/nrg3230 ;PMID: 22641018

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11
A DNA methylation biomarker of alcohol consumption
A DNA methylation biomarker of alcohol consumption
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A DNA methylation biomarker of alcohol consumption

Molecular psychiatry, 2018-02, Vol.23 (2), p.422-433 [Peer Reviewed Journal]

COPYRIGHT 2018 Nature Publishing Group ;Copyright Nature Publishing Group Feb 2018 ;Copyright © 2018 The Author(s) 2018 The Author(s) ;ISSN: 1359-4184 ;ISSN: 1476-5578 ;EISSN: 1476-5578 ;DOI: 10.1038/mp.2016.192 ;PMID: 27843151

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12
Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing
Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing
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Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing

Nature methods, 2020-12, Vol.17 (12), p.1191-1199 [Peer Reviewed Journal]

The Author(s), under exclusive licence to Springer Nature America, Inc. 2020. ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-020-01000-7 ;PMID: 33230324

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13
H3K27M induces defective chromatin spread of PRC2-mediated repressive H3K27me2/me3 and is essential for glioma tumorigenesis
H3K27M induces defective chromatin spread of PRC2-mediated repressive H3K27me2/me3 and is essential for glioma tumorigenesis
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H3K27M induces defective chromatin spread of PRC2-mediated repressive H3K27me2/me3 and is essential for glioma tumorigenesis

Nature communications, 2019-03, Vol.10 (1), p.1262-13, Article 1262 [Peer Reviewed Journal]

This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-09140-x ;PMID: 30890717

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14
Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin
Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin
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Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin

Nature communications, 2018-10, Vol.9 (1), p.4268-14, Article 4268 [Peer Reviewed Journal]

2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Attribution ;The Author(s) 2018 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-018-06739-4 ;PMID: 30323189

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15
Corrigendum: Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites
Corrigendum: Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites
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Corrigendum: Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites

Genome research, 2020-02, Vol.30 (2), p.313-313 [Peer Reviewed Journal]

Copyright Cold Spring Harbor Laboratory Press Feb 2020 ;2020 ;ISSN: 1088-9051 ;EISSN: 1549-5469 ;DOI: 10.1101/gr.261677.120 ;PMID: 32079650

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16
Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo
Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo
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Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo

Nature communications, 2018-01, Vol.9 (1), p.391-14, Article 391 [Peer Reviewed Journal]

2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2018 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-017-02762-z ;PMID: 29374152

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17
Genome-wide identification of DNA methylation QTLs in whole blood highlights pathways for cardiovascular disease
Genome-wide identification of DNA methylation QTLs in whole blood highlights pathways for cardiovascular disease
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Genome-wide identification of DNA methylation QTLs in whole blood highlights pathways for cardiovascular disease

Nature communications, 2019-09, Vol.10 (1), p.4267-14, Article 4267 [Peer Reviewed Journal]

2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-12228-z ;PMID: 31537805

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18
Chronic Chlamydia infection in human organoids increases stemness and promotes age-dependent CpG methylation
Chronic Chlamydia infection in human organoids increases stemness and promotes age-dependent CpG methylation
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Chronic Chlamydia infection in human organoids increases stemness and promotes age-dependent CpG methylation

Nature communications, 2019-03, Vol.10 (1), p.1194-1194, Article 1194 [Peer Reviewed Journal]

This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-09144-7 ;PMID: 30886143

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19
Epigenetic dysregulation of enhancers in neurons is associated with Alzheimer's disease pathology and cognitive symptoms
Epigenetic dysregulation of enhancers in neurons is associated with Alzheimer's disease pathology and cognitive symptoms
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Epigenetic dysregulation of enhancers in neurons is associated with Alzheimer's disease pathology and cognitive symptoms

Nature communications, 2019-05, Vol.10 (1), p.2246-2246, Article 2246 [Peer Reviewed Journal]

The Author(s) 2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-10101-7 ;PMID: 31113950

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20
DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
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DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases

Genome Biology, 2016-12, Vol.17 (1), p.255, Article 255 [Peer Reviewed Journal]

2016. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s). 2016 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-016-1119-5 ;PMID: 27955697

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