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1
The coefficient of determination R-squared is more informative than SMAPE, MAE, MAPE, MSE and RMSE in regression analysis evaluation
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The coefficient of determination R-squared is more informative than SMAPE, MAE, MAPE, MSE and RMSE in regression analysis evaluation

PeerJ. Computer science, 2021-07, Vol.7, p.e623-e623, Article e623 [Peer Reviewed Journal]

COPYRIGHT 2021 PeerJ. Ltd. ;2021 Chicco et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2021 Chicco et al. 2021 Chicco et al. ;ISSN: 2376-5992 ;EISSN: 2376-5992 ;DOI: 10.7717/peerj-cs.623 ;PMID: 34307865

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2
SymPy: symbolic computing in Python
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SymPy: symbolic computing in Python

PeerJ. Computer science, 2017-01, Vol.3, p.e103, Article e103 [Peer Reviewed Journal]

COPYRIGHT 2017 PeerJ. Ltd. ;2017 Meurer et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 2376-5992 ;EISSN: 2376-5992 ;DOI: 10.7717/peerj-cs.103

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3
Bracken: estimating species abundance in metagenomics data
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Bracken: estimating species abundance in metagenomics data

PeerJ. Computer science, 2017-01, Vol.3, p.e104, Article e104 [Peer Reviewed Journal]

COPYRIGHT 2017 PeerJ. Ltd. ;2017 Lu et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 2376-5992 ;EISSN: 2376-5992 ;DOI: 10.7717/peerj-cs.104

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4
Data and its (dis)contents: A survey of dataset development and use in machine learning research
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Data and its (dis)contents: A survey of dataset development and use in machine learning research

Patterns (New York, N.Y.), 2021-11, Vol.2 (11), p.100336-100336, Article 100336 [Peer Reviewed Journal]

2021 The Authors ;2021 The Authors. ;2021 The Authors 2021 ;ISSN: 2666-3899 ;EISSN: 2666-3899 ;DOI: 10.1016/j.patter.2021.100336 ;PMID: 34820643

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5
Computational Tool to Design Small Synthetic Inhibitors Selective for XIAP-BIR3 Domain
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Computational Tool to Design Small Synthetic Inhibitors Selective for XIAP-BIR3 Domain

Molecules (Basel, Switzerland), 2023-07, Vol.28 (13) [Peer Reviewed Journal]

Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1420-3049 ;EISSN: 1420-3049 ;DOI: 10.3390/molecules28135155

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6
RIdeogram : drawing SVG graphics to visualize and map genome-wide data on the idiograms
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RIdeogram : drawing SVG graphics to visualize and map genome-wide data on the idiograms

PeerJ. Computer science, 2020-01, Vol.6, p.e251-e251, Article e251 [Peer Reviewed Journal]

2020 Hao et al. ;COPYRIGHT 2020 PeerJ. Ltd. ;2020 Hao et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2020 Hao et al. 2020 Hao et al. ;ISSN: 2376-5992 ;EISSN: 2376-5992 ;DOI: 10.7717/peerj-cs.251 ;PMID: 33816903

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7
LM2K Model for Hosting a Based-Microservices Application in Multi-Cloud
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LM2K Model for Hosting a Based-Microservices Application in Multi-Cloud

Sensors (Basel, Switzerland), 2023 [Peer Reviewed Journal]

Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1424-8220 ;EISSN: 1424-8220

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8
Joint embedding VQA model based on dynamic word vector
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Joint embedding VQA model based on dynamic word vector

PeerJ. Computer science, 2021-03, Vol.7, p.e353-e353, Article e353 [Peer Reviewed Journal]

2021 Ma et al. ;COPYRIGHT 2021 PeerJ. Ltd. ;2021 Ma et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2021 Ma et al. 2021 Ma et al. ;ISSN: 2376-5992 ;EISSN: 2376-5992 ;DOI: 10.7717/peerj-cs.353 ;PMID: 33817003

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9
OncoLnc: linking TCGA survival data to mRNAs, miRNAs, and lncRNAs
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OncoLnc: linking TCGA survival data to mRNAs, miRNAs, and lncRNAs

PeerJ. Computer science, 2016-06, Vol.2, p.e67, Article e67 [Peer Reviewed Journal]

COPYRIGHT 2016 PeerJ. Ltd. ;2016 Anaya. This is an open access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 2376-5992 ;EISSN: 2376-5992 ;DOI: 10.7717/peerj-cs.67

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10
Predicting judicial decisions of the European Court of Human Rights: a Natural Language Processing perspective
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Article
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Predicting judicial decisions of the European Court of Human Rights: a Natural Language Processing perspective

PeerJ. Computer science, 2016-10, Vol.2, p.e93, Article e93 [Peer Reviewed Journal]

COPYRIGHT 2016 PeerJ. Ltd. ;2016 Aletras etal. This is an open access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 2376-5992 ;EISSN: 2376-5992 ;DOI: 10.7717/peerj-cs.93

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11
Quantification of cell behaviors and computational modeling show that cell directional behaviors drive zebrafish pectoral fin morphogenesis
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Quantification of cell behaviors and computational modeling show that cell directional behaviors drive zebrafish pectoral fin morphogenesis

Bioinformatics (Oxford, England), 2021-09, Vol.37 (18), p.2946-2954 [Peer Reviewed Journal]

Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab201

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12
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

Bioinformatics, 2020-02, Vol.36 (4), p.1234-1240 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz682 ;PMID: 31501885

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13
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
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Article
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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

Bioinformatics, 2019-11, Vol.35 (21), p.4453-4455 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz305 ;PMID: 31070718

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14
fastp: an ultra-fast all-in-one FASTQ preprocessor
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fastp: an ultra-fast all-in-one FASTQ preprocessor

Bioinformatics, 2018-09, Vol.34 (17), p.i884-i890 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty560 ;PMID: 30423086

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15
Minimap2: pairwise alignment for nucleotide sequences
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Article
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Minimap2: pairwise alignment for nucleotide sequences

Bioinformatics, 2018-09, Vol.34 (18), p.3094-3100 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty191 ;PMID: 29750242

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16
TISIDB: an integrated repository portal for tumor–immune system interactions
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Article
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TISIDB: an integrated repository portal for tumor–immune system interactions

Bioinformatics, 2019-10, Vol.35 (20), p.4200-4202 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2019 ;The Author(s) (2019). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz210 ;PMID: 30903160

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17
Nextstrain: real-time tracking of pathogen evolution
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Article
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Nextstrain: real-time tracking of pathogen evolution

Bioinformatics, 2018-12, Vol.34 (23), p.4121-4123 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty407 ;PMID: 29790939

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18
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold
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KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold

Bioinformatics, 2020-04, Vol.36 (7), p.2251-2252 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press. 2019 ;The Author(s) 2019. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btz859 ;PMID: 31742321

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19
Gender differences and bias in open source: pull request acceptance of women versus men
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Article
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Gender differences and bias in open source: pull request acceptance of women versus men

PeerJ. Computer science, 2017-05, Vol.3, p.e111, Article e111 [Peer Reviewed Journal]

COPYRIGHT 2017 PeerJ. Ltd. ;2017 Terrell et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 2376-5992 ;EISSN: 2376-5992 ;DOI: 10.7717/peerj-cs.111

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20
VarSome: the human genomic variant search engine
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VarSome: the human genomic variant search engine

Bioinformatics (Oxford, England), 2019-06, Vol.35 (11), p.1978-1980 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press. ;The Author(s) 2018. Published by Oxford University Press. 2018 ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/bty897 ;PMID: 30376034

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