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1
Automated methods for the summarization of electronic health records
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Automated methods for the summarization of electronic health records

Journal of the American Medical Informatics Association : JAMIA, 2015-09, Vol.22 (5), p.938-947 [Peer Reviewed Journal]

The Author 2015. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. 2015 ;The Author 2015. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocv032 ;PMID: 25882031

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2
A comprehensive study of named entity recognition in Chinese clinical text
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A comprehensive study of named entity recognition in Chinese clinical text

Journal of the American Medical Informatics Association : JAMIA, 2014-09, Vol.21 (5), p.808-814 [Peer Reviewed Journal]

Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions. ;Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions 2014 ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1136/amiajnl-2013-002381 ;PMID: 24347408

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3
Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources
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Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources

Journal of the American Medical Informatics Association : JAMIA, 2015-09, Vol.22 (5), p.993-1000 [Peer Reviewed Journal]

The Author 2015. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2015 ;The Author 2015. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocv034 ;PMID: 25929596

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4
A comparative study of pretrained language models for long clinical text
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A comparative study of pretrained language models for long clinical text

Journal of the American Medical Informatics Association : JAMIA, 2023-01, Vol.30 (2), p.340-347 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com. ;The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com 2022 ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocac225 ;PMID: 36451266

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5
Clinical trial cohort selection based on multi-level rule-based natural language processing system
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Clinical trial cohort selection based on multi-level rule-based natural language processing system

Journal of the American Medical Informatics Association : JAMIA, 2019-11, Vol.26 (11), p.1218-1226 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com. ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocz109 ;PMID: 31300825

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6
Extracting medications and associated adverse drug events using a natural language processing system combining knowledge base and deep learning
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Extracting medications and associated adverse drug events using a natural language processing system combining knowledge base and deep learning

Journal of the American Medical Informatics Association : JAMIA, 2020-01, Vol.27 (1), p.56-64 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com. ;ISSN: 1527-974X ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocz141 ;PMID: 31591641

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7
CLAMP – a toolkit for efficiently building customized clinical natural language processing pipelines
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CLAMP – a toolkit for efficiently building customized clinical natural language processing pipelines

Journal of the American Medical Informatics Association : JAMIA, 2018-03, Vol.25 (3), p.331-336 [Peer Reviewed Journal]

The Author 2017. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2017 ;The Author 2017. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocx132 ;PMID: 29186491

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8
Conversational agents in healthcare: a systematic review
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Conversational agents in healthcare: a systematic review

Journal of the American Medical Informatics Association : JAMIA, 2018-09, Vol.25 (9), p.1248-1258 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press on behalf of the American Medical Informatics Association. 2018 ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocy072 ;PMID: 30010941

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9
Identifying relations of medications with adverse drug events using recurrent convolutional neural networks and gradient boosting
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Identifying relations of medications with adverse drug events using recurrent convolutional neural networks and gradient boosting

Journal of the American Medical Informatics Association : JAMIA, 2020-01, Vol.27 (1), p.65-72 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com. ;ISSN: 1527-974X ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocz144 ;PMID: 31504605

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10
MT-clinical BERT: scaling clinical information extraction with multitask learning
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MT-clinical BERT: scaling clinical information extraction with multitask learning

Journal of the American Medical Informatics Association : JAMIA, 2021-09, Vol.28 (10), p.2108-2115 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com. ;The Author(s) 2021. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com 2021 ;ISSN: 1527-974X ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocab126 ;PMID: 34333635

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11
Deep learning in clinical natural language processing: a methodical review
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Deep learning in clinical natural language processing: a methodical review

Journal of the American Medical Informatics Association : JAMIA, 2020-03, Vol.27 (3), p.457-470 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com. ;The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com 2019 ;ISSN: 1527-974X ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocz200 ;PMID: 31794016

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12
A long journey to short abbreviations: developing an open-source framework for clinical abbreviation recognition and disambiguation (CARD)
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A long journey to short abbreviations: developing an open-source framework for clinical abbreviation recognition and disambiguation (CARD)

Journal of the American Medical Informatics Association : JAMIA, 2017-04, Vol.24 (e1), p.e79-e86 [Peer Reviewed Journal]

The Author 2016. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2016 ;The Author 2016. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocw109 ;PMID: 27539197

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13
ProteinBERT: a universal deep-learning model of protein sequence and function
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Article
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ProteinBERT: a universal deep-learning model of protein sequence and function

Bioinformatics, 2022-04, Vol.38 (8), p.2102-2110 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press. 2022 ;The Author(s) 2022. Published by Oxford University Press. ;ISSN: 1367-4803 ;EISSN: 1460-2059 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btac020 ;PMID: 35020807

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14
Ensemble method–based extraction of medication and related information from clinical texts
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Article
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Ensemble method–based extraction of medication and related information from clinical texts

Journal of the American Medical Informatics Association : JAMIA, 2020-01, Vol.27 (1), p.31-38 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com. ;ISSN: 1527-974X ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocz100 ;PMID: 31282932

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15
Enhancing clinical concept extraction with contextual embeddings
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Article
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Enhancing clinical concept extraction with contextual embeddings

Journal of the American Medical Informatics Association : JAMIA, 2019-11, Vol.26 (11), p.1297-1304 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com. ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocz096 ;PMID: 31265066

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16
2018 n2c2 shared task on adverse drug events and medication extraction in electronic health records
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Article
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2018 n2c2 shared task on adverse drug events and medication extraction in electronic health records

Journal of the American Medical Informatics Association : JAMIA, 2020-01, Vol.27 (1), p.3-12 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com. ;ISSN: 1527-974X ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocz166 ;PMID: 31584655

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17
Learning regular expressions for clinical text classification
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Article
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Learning regular expressions for clinical text classification

Journal of the American Medical Informatics Association : JAMIA, 2014-09, Vol.21 (5), p.850-857 [Peer Reviewed Journal]

Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions. ;Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions 2014 ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1136/amiajnl-2013-002411 ;PMID: 24578357

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18
Artificial intelligence bot ChatGPT in medical research: the potential game changer as a double-edged sword
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Artificial intelligence bot ChatGPT in medical research: the potential game changer as a double-edged sword

Knee surgery, sports traumatology, arthroscopy : official journal of the ESSKA, 2023-04, Vol.31 (4), p.1187-1189 [Peer Reviewed Journal]

The Author(s) under exclusive licence to European Society of Sports Traumatology, Knee Surgery, Arthroscopy (ESSKA) 2023 ;The Author(s) under exclusive licence to European Society of Sports Traumatology, Knee Surgery, Arthroscopy (ESSKA) 2023. ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 0942-2056 ;EISSN: 1433-7347 ;DOI: 10.1007/s00167-023-07355-6 ;PMID: 36809511

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19
Pharmacovigilance from social media: mining adverse drug reaction mentions using sequence labeling with word embedding cluster features
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Pharmacovigilance from social media: mining adverse drug reaction mentions using sequence labeling with word embedding cluster features

Journal of the American Medical Informatics Association : JAMIA, 2015-05, Vol.22 (3), p.671-681 [Peer Reviewed Journal]

The Author 2015. Published by Oxford University Press on behalf of the American Medical Informatics Association. 2015 ;The Author 2015. Published by Oxford University Press on behalf of the American Medical Informatics Association. ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocu041 ;PMID: 25755127

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20
NLPReViz: an interactive tool for natural language processing on clinical text
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Article
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NLPReViz: an interactive tool for natural language processing on clinical text

Journal of the American Medical Informatics Association : JAMIA, 2018-01, Vol.25 (1), p.81-87 [Peer Reviewed Journal]

The Author 2017. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2017 ;The Author 2017. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;ISSN: 1067-5027 ;EISSN: 1527-974X ;DOI: 10.1093/jamia/ocx070 ;PMID: 29016825

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