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A brief history of bioinformaticsBriefings in bioinformatics, 2019-11, Vol.20 (6), p.1981-1996 [Peer Reviewed Journal]The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permissions@oup.com 2018 ;The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permissions@oup.com. ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1467-5463 ;EISSN: 1477-4054 ;DOI: 10.1093/bib/bby063 ;PMID: 30084940Full text available |
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AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations [version 1; peer review: 2 approved]F1000 research, 2016, Vol.5, p.1717-1717 [Peer Reviewed Journal]Copyright: © 2016 Kucera M et al. ;Copyright: © 2016 Kucera M et al. This work is licensed under the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Copyright: © 2016 Kucera M et al. 2016 ;ISSN: 2046-1402 ;EISSN: 2046-1402 ;DOI: 10.12688/f1000research.9090.1 ;PMID: 27830058Full text available |
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Identification of hub genes in colorectal cancer based on weighted gene co-expression network analysis and clinical data from The Cancer Genome AtlasBioscience reports, 2021-07, Vol.41 (7) [Peer Reviewed Journal]2021 The Author(s). 2021 ;ISSN: 0144-8463 ;EISSN: 1573-4935 ;DOI: 10.1042/BSR20211280 ;PMID: 34308980 ;PMID: 34259324Full text available |
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Correction: Modifying the false discovery rate procedure based on the information theory under arbitrary correlation structure and its performance in high-dimensional genomic dataBMC bioinformatics, 2024-02, Vol.25 (1), p.83-83 [Peer Reviewed Journal]COPYRIGHT 2024 BioMed Central Ltd. ;2024. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-024-05696-8 ;PMID: 38395790Full text available |
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High-quality de novo assembly of the apple genome and methylome dynamics of early fruit developmentNature genetics, 2017-07, Vol.49 (7), p.1099-1106 [Peer Reviewed Journal]COPYRIGHT 2017 Nature Publishing Group ;COPYRIGHT 2017 Nature Publishing Group ;Copyright Nature Publishing Group Jul 2017 ;Attribution ;Wageningen University & Research ;ISSN: 1061-4036 ;EISSN: 1546-1718 ;DOI: 10.1038/ng.3886 ;PMID: 28581499Full text available |
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Ensemble of correlation, parenclitic and synolitic graphs as a tool to detect universal changes in complex biological systems2021 Elsevier Ltd. All rights reserved. This manuscript is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International Licence http://creativecommons.org/licenses/by-nc-nd/4.0/ http://creativecommons.org/licenses/by-nc-nd/4.0 ;ISSN: 1571-0645 ;EISSN: 1873-1457 ;DOI: 10.1016/j.plrev.2021.05.009Digital Resources/Online E-Resources |
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Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbiosesProceedings of the National Academy of Sciences - PNAS, 2018-05, Vol.115 (20), p.E4700-E4709 [Peer Reviewed Journal]Volumes 1–89 and 106–114, copyright as a collective work only; author(s) retains copyright to individual articles ;Copyright © 2018 the Author(s). Published by PNAS. ;Copyright National Academy of Sciences May 15, 2018 ;Copyright © 2018 the Author(s). Published by PNAS. 2018 ;Wageningen University & Research ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1721395115 ;PMID: 29717040Full text available |
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Bringing bioinformatics to the scientific massesEMBO reports, 2018-06, Vol.19 (6), p.n/a [Peer Reviewed Journal]2018 The Author ;2018 EMBO ;ISSN: 1469-221X ;EISSN: 1469-3178 ;DOI: 10.15252/embr.201846262Full text available |
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ANALYTICAL DEVELOPMENT STRATEGY FOR DOPAMINERGIC NEURON PRECURSOR CELL REPLACEMENT THERAPY FOR PARKINSON'S DISEASECytotherapy (Oxford, England), 2024-06, Vol.26 (6), p.S225-S225 [Peer Reviewed Journal]2024 ;ISSN: 1465-3249 ;EISSN: 1477-2566 ;DOI: 10.1016/j.jcyt.2024.03.457Full text available |
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Correction: MGcount: a total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcriptsBMC bioinformatics, 2022-06, Vol.23 (1), p.209-209, Article 209 [Peer Reviewed Journal]COPYRIGHT 2022 BioMed Central Ltd. ;2022. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2022 ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/s12859-022-04725-8 ;PMID: 35650556Full text available |
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Correction: Unraveling Kinase Activation Dynamics Using Kinase-Substrate Relationships from Temporal Large-Scale Phosphoproteomics StudiesPloS one, 2017-09, Vol.12 (9), p.e0185871-e0185871 [Peer Reviewed Journal]COPYRIGHT 2017 Public Library of Science ;COPYRIGHT 2017 Public Library of Science ;2017 Domanova et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2017 Domanova et al 2017 Domanova et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0185871 ;PMID: 28957418Full text available |
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Material Type: Article
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raxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using RAxMLMethods in ecology and evolution, 2021-02, Vol.12 (2), p.373 [Peer Reviewed Journal]ISSN: 2041-210X ;EISSN: 2041-210X ;DOI: 10.1111/2041-210X.13512Digital Resources/Online E-Resources |
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Material Type: Article
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SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systemsBioinformatics (Oxford, England), 2021-11, Vol.37 (21), p.3702-3706 [Peer Reviewed Journal]Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab229Full text available |
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Increased Collagen Turnover Is a Feature of Fibromuscular Dysplasia and Associated With Hypertrophic Radial Remodeling: A Pilot, Urine Proteomic StudyHypertension (Dallas, Tex. 1979), 2021-11 [Peer Reviewed Journal]Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 0194-911X ;EISSN: 1524-4563Full text available |
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Material Type: Article
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m6aViewer: software for the detection, analysis, and visualization of N6-methyladenosine peaks from m6A-seq/ME-RIP sequencing dataRNA (Cambridge), 2017-10, Vol.23 (10), p.1493-1501 [Peer Reviewed Journal]2017 ;ISSN: 1355-8382 ;EISSN: 1469-9001 ;DOI: 10.1261/rna.058206.116 ;PMID: 28724534Full text available |
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Abstract 2442 Finding the mRNA sequence of Methylcitrate synthase in Sclerotinia Homoeocarpa using BioinformaticsThe Journal of biological chemistry, 2024-03, Vol.300 (3) [Peer Reviewed Journal]2024 The American Society for Biochemistry and Molecular Biology, Inc. ;ISSN: 0021-9258 ;EISSN: 1083-351X ;DOI: 10.1016/j.jbc.2024.106304Full text available |
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Material Type: Article
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SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systemsBioinformatics (Oxford, England), 2021-06, Vol.37 (21), p.3702-3706 [Peer Reviewed Journal]Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1367-4803 ;EISSN: 1367-4811 ;DOI: 10.1093/bioinformatics/btab229Full text available |
18 |
Material Type: Article
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Simulations of pH-effects on kallikrein activity predict compromised skin barrier and predisposition to irritations and dryness characteristic of atopic dermatitis (poster abstract)Journal of investigative dermatology, 2021-10, Vol.141 (10) [Peer Reviewed Journal]Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 0022-202X ;EISSN: 1523-1747 ;DOI: 10.1016/j.jid.2021.08.136Full text available |
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Material Type: Article
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Recent Therapeutic Advancements Using Bioinformatics and Chemoinformatics ApproachesCurrent topics in medicinal chemistry, 2018, Vol.18 (20), p.1717-1718 [Peer Reviewed Journal]Copyright Bentham Science Aug 2018 ;ISSN: 1568-0266 ;EISSN: 1873-4294 ;DOI: 10.2174/156802661820181231102849Full text available |
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Material Type: Article
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Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0Journal of the American Society for Mass Spectrometry, 2016-11, Vol.27 (11), p.1719-1727 [Peer Reviewed Journal]The Author(s) 2016 ;Journal of The American Society for Mass Spectrometry is a copyright of Springer, (2016). All Rights Reserved. ;ISSN: 1044-0305 ;ISSN: 1879-1123 ;EISSN: 1879-1123 ;DOI: 10.1007/s13361-016-1460-7 ;PMID: 27572102Full text available |