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1
Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses
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Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses

Proceedings of the National Academy of Sciences - PNAS, 2018-05, Vol.115 (20), p.E4700-E4709 [Peer Reviewed Journal]

Volumes 1–89 and 106–114, copyright as a collective work only; author(s) retains copyright to individual articles ;Copyright © 2018 the Author(s). Published by PNAS. ;Copyright National Academy of Sciences May 15, 2018 ;Copyright © 2018 the Author(s). Published by PNAS. 2018 ;Wageningen University & Research ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1721395115 ;PMID: 29717040

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2
Bringing bioinformatics to the scientific masses
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Bringing bioinformatics to the scientific masses

EMBO reports, 2018-06, Vol.19 (6), p.n/a [Peer Reviewed Journal]

2018 The Author ;2018 EMBO ;ISSN: 1469-221X ;EISSN: 1469-3178 ;DOI: 10.15252/embr.201846262

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3
Increased Collagen Turnover Is a Feature of Fibromuscular Dysplasia and Associated With Hypertrophic Radial Remodeling: A Pilot, Urine Proteomic Study
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Increased Collagen Turnover Is a Feature of Fibromuscular Dysplasia and Associated With Hypertrophic Radial Remodeling: A Pilot, Urine Proteomic Study

Hypertension (Dallas, Tex. 1979), 2021-11 [Peer Reviewed Journal]

Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 0194-911X ;EISSN: 1524-4563

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4
m6aViewer: software for the detection, analysis, and visualization of N6-methyladenosine peaks from m6A-seq/ME-RIP sequencing data
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m6aViewer: software for the detection, analysis, and visualization of N6-methyladenosine peaks from m6A-seq/ME-RIP sequencing data

RNA (Cambridge), 2017-10, Vol.23 (10), p.1493-1501 [Peer Reviewed Journal]

2017 ;ISSN: 1355-8382 ;EISSN: 1469-9001 ;DOI: 10.1261/rna.058206.116 ;PMID: 28724534

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5
Abstract 2442 Finding the mRNA sequence of Methylcitrate synthase in Sclerotinia Homoeocarpa using Bioinformatics
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Abstract 2442 Finding the mRNA sequence of Methylcitrate synthase in Sclerotinia Homoeocarpa using Bioinformatics

The Journal of biological chemistry, 2024-03, Vol.300 (3) [Peer Reviewed Journal]

2024 The American Society for Biochemistry and Molecular Biology, Inc. ;ISSN: 0021-9258 ;EISSN: 1083-351X ;DOI: 10.1016/j.jbc.2024.106304

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6
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
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The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

Nucleic acids research, 2019-01, Vol.47 (D1), p.D259-D264 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;ISSN: 0305-1048 ;ISSN: 1362-4962 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gky1022 ;PMID: 30371820

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7
The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots
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The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots

The Plant cell, 2016-12, Vol.28 (12), p.2937-2951 [Peer Reviewed Journal]

2016 American Society of Plant Biologists ;2016 American Society of Plant Biologists. All rights reserved. ;2016 American Society of Plant Biologists. All rights reserved. 2016 ;Wageningen University & Research ;ISSN: 1040-4651 ;ISSN: 1532-298X ;EISSN: 1532-298X ;DOI: 10.1105/tpc.16.00656 ;PMID: 27920338

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8
Abstract 1402 Rac1/Rab5-Mediated Suppression of Armus Facilitates the Rab7-Mediated Secretory Lysosomal and Transcytotic Pathways in the Osteoclast
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Abstract 1402 Rac1/Rab5-Mediated Suppression of Armus Facilitates the Rab7-Mediated Secretory Lysosomal and Transcytotic Pathways in the Osteoclast

The Journal of biological chemistry, 2024-03, Vol.300 (3) [Peer Reviewed Journal]

2024 The American Society for Biochemistry and Molecular Biology, Inc. ;ISSN: 0021-9258 ;EISSN: 1083-351X ;DOI: 10.1016/j.jbc.2024.106893

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9
Abstract 1702 The New BioCyc Genome Browser Provides Real-Time Zooming to the Sequence Level
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Abstract 1702 The New BioCyc Genome Browser Provides Real-Time Zooming to the Sequence Level

The Journal of biological chemistry, 2024-03, Vol.300 (3) [Peer Reviewed Journal]

2024 The American Society for Biochemistry and Molecular Biology, Inc. ;ISSN: 0021-9258 ;EISSN: 1083-351X ;DOI: 10.1016/j.jbc.2024.106290

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10
Defining the Drivers of Idelalisib-Related Early Autoimmune Toxicity in Chronic Lymphocytic Leukemia
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Defining the Drivers of Idelalisib-Related Early Autoimmune Toxicity in Chronic Lymphocytic Leukemia

Blood, 2023-11, Vol.142 (Supplement 1), p.6511-6511 [Peer Reviewed Journal]

ISSN: 0006-4971 ;EISSN: 1528-0020 ;DOI: 10.1182/blood-2023-186136

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11
Glycomics@ExPASy: Bridging the Gap
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Glycomics@ExPASy: Bridging the Gap

Molecular & cellular proteomics, 2018-11, Vol.17 (11), p.2164-2176 [Peer Reviewed Journal]

2018 © 2018 Mariethoz et al. ;2018 Mariethoz et al. ;2018 Mariethoz et al. 2018 Mariethoz et al. ;ISSN: 1535-9476 ;EISSN: 1535-9484 ;DOI: 10.1074/mcp.RA118.000799 ;PMID: 30097532

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12
De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing
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De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing

The Plant cell, 2017-10, Vol.29 (10), p.2336-2348 [Peer Reviewed Journal]

2017 American Society of Plant Biologists ;2017 American Society of Plant Biologists. All rights reserved. ;Copyright American Society of Plant Biologists Oct 2017 ;Attribution ;2017 American Society of Plant Biologists. All rights reserved. 2017 ;Wageningen University & Research ;ISSN: 1040-4651 ;EISSN: 1532-298X ;DOI: 10.1105/tpc.17.00521 ;PMID: 29025960

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13
An atlas of human metabolism
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An atlas of human metabolism

Science signaling, 2020-03, Vol.13 (624) [Peer Reviewed Journal]

ISSN: 1945-0877 ;ISSN: 1937-9145 ;EISSN: 1937-9145 ;DOI: 10.1126/scisignal.aaz1482

Digital Resources/Online E-Resources

14
Arabidopsis BIRD Zinc Finger Proteins Jointly Stabilize Tissue Boundaries by Confining the Cell Fate Regulator SHORT-ROOT and Contributing to Fate Specification
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Arabidopsis BIRD Zinc Finger Proteins Jointly Stabilize Tissue Boundaries by Confining the Cell Fate Regulator SHORT-ROOT and Contributing to Fate Specification

The Plant cell, 2015-04, Vol.27 (4), p.1185-1199 [Peer Reviewed Journal]

2015 American Society of Plant Biologists ;2015 American Society of Plant Biologists. All rights reserved. ;2015 American Society of Plant Biologists. All rights reserved. 2015 ;Wageningen University & Research ;ISSN: 1040-4651 ;EISSN: 1532-298X ;DOI: 10.1105/tpc.114.132407 ;PMID: 25829440

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15
Simultaneous Improvement in the Precision, Accuracy, and Robustness of Label-free Proteome Quantification by Optimizing Data Manipulation Chains[S]
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Simultaneous Improvement in the Precision, Accuracy, and Robustness of Label-free Proteome Quantification by Optimizing Data Manipulation Chains[S]

Molecular & cellular proteomics, 2019-08, Vol.18 (8), p.1683-1699 [Peer Reviewed Journal]

2019 © 2019 Tang et al. ;2019 Tang et al. ;2019 Tang et al. 2019 Tang et al. ;ISSN: 1535-9476 ;EISSN: 1535-9484 ;DOI: 10.1074/mcp.RA118.001169 ;PMID: 31097671

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16
MaxQuant Software for Ion Mobility Enhanced Shotgun Proteomics
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Article
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MaxQuant Software for Ion Mobility Enhanced Shotgun Proteomics

Molecular & cellular proteomics, 2020-06, Vol.19 (6), p.1058-1069 [Peer Reviewed Journal]

2020 © 2020 Prianichnikov et al. ;2020 Prianichnikov et al. ;2020 Prianichnikov et al. 2020 Prianichnikov et al. ;ISSN: 1535-9476 ;EISSN: 1535-9484 ;DOI: 10.1074/mcp.TIR119.001720 ;PMID: 32156793

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17
Interactive Peptide Spectral Annotator: A Versatile Web-based Tool for Proteomic Applications
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Interactive Peptide Spectral Annotator: A Versatile Web-based Tool for Proteomic Applications

Molecular & cellular proteomics, 2019-08, Vol.18 (8), p.S193-S201 [Peer Reviewed Journal]

2019 © 2019 Brademan et al. ;2019 Brademan et al. ;2019 Brademan et al. 2019 Brademan et al. ;ISSN: 1535-9476 ;EISSN: 1535-9484 ;DOI: 10.1074/mcp.TIR118.001209 ;PMID: 31088857

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18
Direct RNA sequencing enables m6A detection in endogenous transcript isoforms at base-specific resolution
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Article
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Direct RNA sequencing enables m6A detection in endogenous transcript isoforms at base-specific resolution

RNA (Cambridge), 2020, Vol.26 (1), p.19-28 [Peer Reviewed Journal]

Copyright Cold Spring Harbor Laboratory Press Jan 2020 ;2020 ;ISSN: 1355-8382 ;EISSN: 1469-9001 ;DOI: 10.1261/rna.072785.119 ;PMID: 31624092

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19
Relative Performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens
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Relative Performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens

Applied and environmental microbiology, 2019-11, Vol.85 (21) [Peer Reviewed Journal]

Copyright © 2019 American Society for Microbiology. ;Copyright American Society for Microbiology Nov 2019 ;Copyright © 2019 American Society for Microbiology. 2019 American Society for Microbiology ;ISSN: 0099-2240 ;ISSN: 1098-5336 ;EISSN: 1098-5336 ;DOI: 10.1128/aem.01368-19 ;PMID: 31444199

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20
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
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BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

Molecular biology and evolution, 2018-03, Vol.35 (3), p.543-548 [Peer Reviewed Journal]

The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. ;The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. 2017 ;ISSN: 0737-4038 ;EISSN: 1537-1719 ;DOI: 10.1093/molbev/msx319 ;PMID: 29220515

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