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1
Correction: Human demographic history has amplified the effects of background selection across the genome
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Correction: Human demographic history has amplified the effects of background selection across the genome

PLoS genetics, 2019-01, Vol.15 (1), p.e1007898-e1007898 [Peer Reviewed Journal]

COPYRIGHT 2019 Public Library of Science ;COPYRIGHT 2019 Public Library of Science ;2019 Torres et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2019 Torres et al 2019 Torres et al ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1007898 ;PMID: 30601801

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2
Correction: Genome Sequencing Highlights the Dynamic Early History of Dogs
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Correction: Genome Sequencing Highlights the Dynamic Early History of Dogs

PLoS genetics, 2014-08, Vol.10 (8), p.e1004631 [Peer Reviewed Journal]

2014 The PLOS Genetics Staff 2014 The PLOS Genetics Staff ;2014 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Staff (2014) Correction: Genome Sequencing Highlights the Dynamic Early History of Dogs. PLoS Genet 10(8): e1004631. doi:10.1371/journal.pgen.1004631 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1004631

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3
Correction: Genome Sequencing Highlights the Dynamic Early History of Dogs: e1004631
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Correction: Genome Sequencing Highlights the Dynamic Early History of Dogs: e1004631

PLoS genetics, 2014-08, Vol.10 (8) [Peer Reviewed Journal]

2014 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Staff (2014) Correction: Genome Sequencing Highlights the Dynamic Early History of Dogs. PLoS Genet 10(8): e1004631. doi:10.1371/journal.pgen.1004631 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1004631

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4
Population structure in genetic studies: Confounding factors and mixed models
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Population structure in genetic studies: Confounding factors and mixed models

PLoS genetics, 2018-12, Vol.14 (12), p.e1007309-e1007309 [Peer Reviewed Journal]

COPYRIGHT 2018 Public Library of Science ;COPYRIGHT 2018 Public Library of Science ;2018 Sul et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2018 Sul et al 2018 Sul et al ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1007309 ;PMID: 30589851

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5
Beyond SNP heritability: Polygenicity and discoverability of phenotypes estimated with a univariate Gaussian mixture model
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Beyond SNP heritability: Polygenicity and discoverability of phenotypes estimated with a univariate Gaussian mixture model

PLoS genetics, 2020-05, Vol.16 (5), p.e1008612-e1008612 [Peer Reviewed Journal]

COPYRIGHT 2020 Public Library of Science ;COPYRIGHT 2020 Public Library of Science ;2020 Holland et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;info:eu-repo/semantics/openAccess ;2020 Holland et al 2020 Holland et al ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1008612 ;PMID: 32427991

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6
A population genetic signal of polygenic adaptation
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A population genetic signal of polygenic adaptation

PLoS genetics, 2014-08, Vol.10 (8), p.e1004412-e1004412 [Peer Reviewed Journal]

COPYRIGHT 2014 Public Library of Science ;COPYRIGHT 2014 Public Library of Science ;2014 Berg, Coop 2014 Berg, Coop ;2014 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Berg JJ, Coop G (2014) A Population Genetic Signal of Polygenic Adaptation. PLoS Genet 10(8): e1004412. doi:10.1371/journal.pgen.1004412 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1004412 ;PMID: 25102153

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7
Evaluating the Performance of Fine-Mapping Strategies at Common Variant GWAS Loci
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Evaluating the Performance of Fine-Mapping Strategies at Common Variant GWAS Loci

PLoS genetics, 2015-09, Vol.11 (9), p.e1005535-e1005535 [Peer Reviewed Journal]

COPYRIGHT 2015 Public Library of Science ;2015 van de Bunt et al 2015 van de Bunt et al ;2015 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: van de Bunt M, Cortes A, IGAS Consortium, Brown MA, Morris AP, McCarthy MI (2015) Evaluating the Performance of Fine-Mapping Strategies at Common Variant GWAS Loci. PLoS Genet 11(9): e1005535. doi:10.1371/journal.pgen.1005535 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1005535 ;PMID: 26406328

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8
Bayesian test for colocalisation between pairs of genetic association studies using summary statistics
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Bayesian test for colocalisation between pairs of genetic association studies using summary statistics

PLoS genetics, 2014-05, Vol.10 (5), p.e1004383-e1004383 [Peer Reviewed Journal]

COPYRIGHT 2014 Public Library of Science ;COPYRIGHT 2014 Public Library of Science ;2014 Giambartolomei et al 2014 Giambartolomei et al ;2014 Giambartolomei et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Giambartolomei C, Vukcevic D, Schadt EE, Franke L, Hingorani AD, et al. (2014) Bayesian Test for Colocalisation between Pairs of Genetic Association Studies Using Summary Statistics. PLoS Genet 10(5): e1004383. doi:10.1371/journal.pgen.1004383 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1004383 ;PMID: 24830394

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9
Correction: Multilevel effects of light on ribosome dynamics in chloroplasts program genome-wide and psbA-specific changes in translation
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Correction: Multilevel effects of light on ribosome dynamics in chloroplasts program genome-wide and psbA-specific changes in translation

PLoS genetics, 2019-01, Vol.15 (1), p.e1007907-e1007907 [Peer Reviewed Journal]

COPYRIGHT 2019 Public Library of Science ;COPYRIGHT 2019 Public Library of Science ;2019 Chotewutmontri, Barkan. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2019 Chotewutmontri, Barkan 2019 Chotewutmontri, Barkan ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1007907 ;PMID: 30605477

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10
Genetic control of the root system in rice under normal and drought stress conditions by genome-wide association study
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Genetic control of the root system in rice under normal and drought stress conditions by genome-wide association study

PLoS genetics, 2017-07, Vol.13 (7), p.e1006889-e1006889 [Peer Reviewed Journal]

COPYRIGHT 2017 Public Library of Science ;COPYRIGHT 2017 Public Library of Science ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Li X, Guo Z, Lv Y, Cen X, Ding X, Wu H, et al. (2017) Genetic control of the root system in rice under normal and drought stress conditions by genome-wide association study. PLoS Genet 13(7): e1006889. https://doi.org/10.1371/journal.pgen.1006889 ;2017 Li et al 2017 Li et al ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Li X, Guo Z, Lv Y, Cen X, Ding X, Wu H, et al. (2017) Genetic control of the root system in rice under normal and drought stress conditions by genome-wide association study. PLoS Genet 13(7): e1006889. https://doi.org/10.1371/journal.pgen.1006889 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1006889 ;PMID: 28686596

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11
Eliciting priors and relaxing the single causal variant assumption in colocalisation analyses
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Eliciting priors and relaxing the single causal variant assumption in colocalisation analyses

PLoS genetics, 2020-04, Vol.16 (4), p.e1008720-e1008720 [Peer Reviewed Journal]

2020 Chris Wallace. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2020 Chris Wallace 2020 Chris Wallace ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1008720 ;PMID: 32310995

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12
Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies
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Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies

PLoS genetics, 2016-02, Vol.12 (2), p.e1005767-e1005767 [Peer Reviewed Journal]

COPYRIGHT 2016 Public Library of Science ;COPYRIGHT 2016 Public Library of Science ;2016 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Liu X, Huang M, Fan B, Buckler ES, Zhang Z (2016) Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies. PLoS Genet 12(2): e1005767. doi:10.1371/journal.pgen.1005767 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1005767 ;PMID: 26828793

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13
Statistical correction of the Winner's Curse explains replication variability in quantitative trait genome-wide association studies
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Statistical correction of the Winner's Curse explains replication variability in quantitative trait genome-wide association studies

PLoS genetics, 2017-07, Vol.13 (7), p.e1006916-e1006916 [Peer Reviewed Journal]

COPYRIGHT 2017 Public Library of Science ;COPYRIGHT 2017 Public Library of Science ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Palmer C, Pe’er I (2017) Statistical correction of the Winner’s Curse explains replication variability in quantitative trait genome-wide association studies. PLoS Genet 13(7): e1006916. https://doi.org/10.1371/journal.pgen.1006916 ;2017 Palmer, Pe’er 2017 Palmer, Pe’er ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Palmer C, Pe’er I (2017) Statistical correction of the Winner’s Curse explains replication variability in quantitative trait genome-wide association studies. PLoS Genet 13(7): e1006916. https://doi.org/10.1371/journal.pgen.1006916 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1006916 ;PMID: 28715421

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14
Solving the missing heritability problem
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Solving the missing heritability problem

PLoS genetics, 2019-06, Vol.15 (6), p.e1008222-e1008222 [Peer Reviewed Journal]

COPYRIGHT 2019 Public Library of Science ;COPYRIGHT 2019 Public Library of Science ;2019 Alexander I. Young. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2019 Alexander I. Young 2019 Alexander I. Young ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1008222 ;PMID: 31233496

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15
A more accurate method for colocalisation analysis allowing for multiple causal variants
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A more accurate method for colocalisation analysis allowing for multiple causal variants

PLoS genetics, 2021-09, Vol.17 (9), p.e1009440-e1009440 [Peer Reviewed Journal]

COPYRIGHT 2021 Public Library of Science ;2021 Chris Wallace. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2021 Chris Wallace 2021 Chris Wallace ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1009440 ;PMID: 34587156

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16
Repetitive elements may comprise over two-thirds of the human genome
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Repetitive elements may comprise over two-thirds of the human genome

PLoS genetics, 2011-12, Vol.7 (12), p.e1002384-e1002384 [Peer Reviewed Journal]

COPYRIGHT 2011 Public Library of Science ;COPYRIGHT 2011 Public Library of Science ;de Koning et al. 2011 ;2011 de Koning et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: de Koning APJ, Gu W, Castoe TA, Batzer MA, Pollock DD (2011) Repetitive Elements May Comprise Over Two-Thirds of the Human Genome. PLoS Genet 7(12): e1002384. doi:10.1371/journal.pgen.1002384 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1002384 ;PMID: 22144907

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17
Inference of population structure using dense haplotype data
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Inference of population structure using dense haplotype data

PLoS genetics, 2012-01, Vol.8 (1), p.e1002453-e1002453 [Peer Reviewed Journal]

COPYRIGHT 2012 Public Library of Science ;COPYRIGHT 2012 Public Library of Science ;2012 Lawson et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Lawson DJ, Hellenthal G, Myers S, Falush D (2012) Inference of Population Structure using Dense Haplotype Data. PLoS Genet 8(1): e1002453. doi:10.1371/journal.pgen.1002453 ;Lawson et al. 2012 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1002453 ;PMID: 22291602

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18
UMAP reveals cryptic population structure and phenotype heterogeneity in large genomic cohorts
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UMAP reveals cryptic population structure and phenotype heterogeneity in large genomic cohorts

PLoS genetics, 2019-11, Vol.15 (11), p.e1008432-e1008432 [Peer Reviewed Journal]

COPYRIGHT 2019 Public Library of Science ;COPYRIGHT 2019 Public Library of Science ;2019 Diaz-Papkovich et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2019 Diaz-Papkovich et al 2019 Diaz-Papkovich et al ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1008432 ;PMID: 31675358

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19
Genomic selection and association mapping in rice (Oryza sativa): effect of trait genetic architecture, training population composition, marker number and statistical model on accuracy of rice genomic selection in elite, tropical rice breeding lines
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Genomic selection and association mapping in rice (Oryza sativa): effect of trait genetic architecture, training population composition, marker number and statistical model on accuracy of rice genomic selection in elite, tropical rice breeding lines

PLoS genetics, 2015-02, Vol.11 (2), p.e1004982-e1004982 [Peer Reviewed Journal]

COPYRIGHT 2015 Public Library of Science ;COPYRIGHT 2015 Public Library of Science ;2015 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: ): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines. PLoS Genet 11(2): e1004982. doi:10.1371/journal.pgen.1004982 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1004982 ;PMID: 25689273

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20
Integrating predicted transcriptome from multiple tissues improves association detection
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Integrating predicted transcriptome from multiple tissues improves association detection

PLoS genetics, 2019-01, Vol.15 (1), p.e1007889-e1007889 [Peer Reviewed Journal]

COPYRIGHT 2019 Public Library of Science ;COPYRIGHT 2019 Public Library of Science ;2019 Barbeira et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2019 Barbeira et al 2019 Barbeira et al ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1007889 ;PMID: 30668570

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