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1
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
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Article
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Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

Nucleic acids research, 2021-07, Vol.49 (W1), p.W293-W296 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2021 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab301 ;PMID: 33885785

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2
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights
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MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights

Nucleic acids research, 2021-07, Vol.49 (W1), p.W388-W396 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2021 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab382 ;PMID: 34019663

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3
antiSMASH 6.0: improving cluster detection and comparison capabilities
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Article
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antiSMASH 6.0: improving cluster detection and comparison capabilities

Nucleic acids research, 2021-07, Vol.49 (W1), p.W29-W35 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2021 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab335 ;PMID: 33978755

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4
ADMETlab 2.0: an integrated online platform for accurate and comprehensive predictions of ADMET properties
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Article
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ADMETlab 2.0: an integrated online platform for accurate and comprehensive predictions of ADMET properties

Nucleic acids research, 2021-07, Vol.49 (W1), p.W5-W14 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2021 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab255 ;PMID: 33893803

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5
KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis
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Article
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KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis

Nucleic acids research, 2021-07, Vol.49 (W1), p.W317-W325 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2021 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab447 ;PMID: 34086934

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6
PLIP 2021: expanding the scope of the protein–ligand interaction profiler to DNA and RNA
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Article
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PLIP 2021: expanding the scope of the protein–ligand interaction profiler to DNA and RNA

Nucleic acids research, 2021-07, Vol.49 (W1), p.W530-W534 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2021 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab294 ;PMID: 33950214

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7
tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes
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Article
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tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes

Nucleic acids research, 2021-09, Vol.49 (16), p.9077-9096 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2021 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab688 ;PMID: 34417604

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8
Mol Viewer: modern web app for 3D visualization and analysis of large biomolecular structures
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Article
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Mol Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

Nucleic acids research, 2021-05, Vol.49 (W1), p.W431-W437 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2021 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab314 ;PMID: 33956157

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9
Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users
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Article
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Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users

Nucleic acids research, 2021-07, Vol.49 (W1), p.W216-W227 [Peer Reviewed Journal]

The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. 2021 ;The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkab225 ;PMID: 33849055

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10
Microbially Produced Imidazole Propionate Impairs Insulin Signaling through mTORC1
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Article
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Microbially Produced Imidazole Propionate Impairs Insulin Signaling through mTORC1

Cell, 2018-11, Vol.175 (4), p.947-961.e17 [Peer Reviewed Journal]

2018 Elsevier Inc. ;Copyright © 2018 Elsevier Inc. All rights reserved. ;ISSN: 0092-8674 ;EISSN: 1097-4172 ;DOI: 10.1016/j.cell.2018.09.055 ;PMID: 30401435

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11
UniProt: the universal protein knowledgebase
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Article
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UniProt: the universal protein knowledgebase

Nucleic acids research, 2018-03, Vol.46 (5), p.2699-2699 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. 2018 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gky092 ;PMID: 29425356

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12
BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes
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Article
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BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes

Nucleic acids research, 2017-07, Vol.45 (W1), p.W24-W29 [Peer Reviewed Journal]

The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. 2017 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkx346 ;PMID: 28472356

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13
WebGestalt 2017: a more comprehensive, powerful, flexible and interactive gene set enrichment analysis toolkit
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Article
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WebGestalt 2017: a more comprehensive, powerful, flexible and interactive gene set enrichment analysis toolkit

Nucleic acids research, 2017-07, Vol.45 (W1), p.W130-W137 [Peer Reviewed Journal]

The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. 2017 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkx356 ;PMID: 28472511

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14
CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features
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Article
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CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features

Nucleic acids research, 2017-07, Vol.45 (W1), p.W12-W16 [Peer Reviewed Journal]

The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. 2017 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkx428 ;PMID: 28521017

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15
From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites
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Article
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From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites

Cell, 2016-06, Vol.165 (6), p.1332-1345 [Peer Reviewed Journal]

2016 Elsevier Inc. ;Copyright © 2016 Elsevier Inc. All rights reserved. ;ISSN: 0092-8674 ;EISSN: 1097-4172 ;DOI: 10.1016/j.cell.2016.05.041 ;PMID: 27259147

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16
COFACTOR: improved protein function prediction by combining structure, sequence and protein-protein interaction information
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Article
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COFACTOR: improved protein function prediction by combining structure, sequence and protein-protein interaction information

Nucleic acids research, 2017-07, Vol.45 (W1), p.W291-W299 [Peer Reviewed Journal]

The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. 2017 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkx366 ;PMID: 28472402

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17
AMPK: restoring metabolic homeostasis over space and time
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Article
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AMPK: restoring metabolic homeostasis over space and time

Molecular cell, 2021-09, Vol.81 (18), p.3677-3690 [Peer Reviewed Journal]

2021 The Authors ;ISSN: 1097-2765 ;EISSN: 1097-4164 ;DOI: 10.1016/j.molcel.2021.08.015 ;PMID: 34547233

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18
Multi-omic and multi-view clustering algorithms: review and cancer benchmark
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Article
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Multi-omic and multi-view clustering algorithms: review and cancer benchmark

Nucleic acids research, 2018-11, Vol.46 (20), p.10546-10562 [Peer Reviewed Journal]

The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. 2018 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gky889 ;PMID: 30295871

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19
IntaRNA 2.0: enhanced and customizable prediction of RNA-RNA interactions
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Article
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IntaRNA 2.0: enhanced and customizable prediction of RNA-RNA interactions

Nucleic acids research, 2017-07, Vol.45 (W1), p.W435-W439 [Peer Reviewed Journal]

The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. 2017 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkx279 ;PMID: 28472523

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20
KEGG for taxonomy-based analysis of pathways and genomes
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Article
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KEGG for taxonomy-based analysis of pathways and genomes

Nucleic acids research, 2023-01, Vol.51 (D1), p.D587-D592 [Peer Reviewed Journal]

The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. ;The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. 2023 ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkac963 ;PMID: 36300620

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