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1	Material Type: Article	The ARRIVE guidelines 2.0: Updated guidelines for reporting animal research PLoS biology, 2020-07, Vol.18 (7), p.e3000410-e3000410 [Peer Reviewed Journal] This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication: https://creativecommons.org/publicdomain/zero/1.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.3000410 ;PMID: 32663219 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
2	Material Type: Article	OpenMM 7: Rapid development of high performance algorithms for molecular dynamics PLoS computational biology, 2017-07, Vol.13 (7), p.e1005659-e1005659 [Peer Reviewed Journal] COPYRIGHT 2017 Public Library of Science ;COPYRIGHT 2017 Public Library of Science ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Eastman P, Swails J, Chodera JD, McGibbon RT, Zhao Y, Beauchamp KA, et al. (2017) OpenMM 7: Rapid development of high performance algorithms for molecular dynamics. PLoS Comput Biol 13(7): e1005659. https://doi.org/10.1371/journal.pcbi.1005659 ;2017 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Eastman P, Swails J, Chodera JD, McGibbon RT, Zhao Y, Beauchamp KA, et al. (2017) OpenMM 7: Rapid development of high performance algorithms for molecular dynamics. PLoS Comput Biol 13(7): e1005659. https://doi.org/10.1371/journal.pcbi.1005659 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1005659 ;PMID: 28746339 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
3	Material Type: Article	Beyond bar and line graphs: time for a new data presentation paradigm PLoS biology, 2015-04, Vol.13 (4), p.e1002128-e1002128 [Peer Reviewed Journal] 2015 Weissgerber et al 2015 Weissgerber et al ;2015 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Weissgerber TL, Milic NM, Winham SJ, Garovic VD (2015) Beyond Bar and Line Graphs: Time for a New Data Presentation Paradigm. PLoS Biol 13(4): e1002128. doi:10.1371/journal.pbio.1002128 ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.1002128 ;PMID: 25901488 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
4	Material Type: Article	Carbonic anhydrase generates CO2 and H+ that drive spider silk formation via opposite effects on the terminal domains PLoS biology, 2014-08, Vol.12 (8), p.e1001921-e1001921 [Peer Reviewed Journal] 2014 Andersson et al 2014 Andersson et al ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.1001921 ;PMID: 25093327 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
5	Material Type: Article	Towards a more general understanding of the algorithmic utility of recurrent connections PLoS computational biology, 2022-06, Vol.18 (6) [Peer Reviewed Journal] ISSN: 1553-7358 ;EISSN: 1553-7358 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
6	Material Type: Article	Reporting animal research: Explanation and elaboration for the ARRIVE guidelines 2.0 PLoS biology, 2020-07, Vol.18 (7), p.e3000411-e3000411 [Peer Reviewed Journal] This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication: https://creativecommons.org/publicdomain/zero/1.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.3000411 ;PMID: 32663221 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
7	Material Type: Article	Differential methods for assessing sensitivity in biological models PLoS computational biology, 2022-06, Vol.18 (6) [Peer Reviewed Journal] ISSN: 1553-7358 ;EISSN: 1553-7358 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
8	Material Type: Article	Multivariable association discovery in population-scale meta-omics studies PLoS computational biology, 2021-11, Vol.17 (11), p.e1009442 [Peer Reviewed Journal] COPYRIGHT 2021 Public Library of Science ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1009442 ;PMID: 34784344 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
9	Material Type: Article	Crystal Structure of an Ammonia-Permeable Aquaporin PLoS biology, 2016-03, Vol.14 (3), p.e1002411-e1002411 [Peer Reviewed Journal] 2016 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Kirscht A, Kaptan SS, Bienert GP, Chaumont F, Nissen P, de Groot BL, et al. (2016) Crystal Structure of an Ammonia-Permeable Aquaporin. PLoS Biol 14(3): e1002411. doi:10.1371/journal.pbio.1002411 ;2016 Kirscht et al 2016 Kirscht et al ;2016 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Kirscht A, Kaptan SS, Bienert GP, Chaumont F, Nissen P, de Groot BL, et al. (2016) Crystal Structure of an Ammonia-Permeable Aquaporin. PLoS Biol 14(3): e1002411. doi:10.1371/journal.pbio.1002411 ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.1002411 ;PMID: 27028365 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
10	Material Type: Article	BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis PLoS computational biology, 2019-04, Vol.15 (4), p.e1006650-e1006650 [Peer Reviewed Journal] COPYRIGHT 2019 Public Library of Science ;COPYRIGHT 2019 Public Library of Science ;2019 Bouckaert et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2019 Bouckaert et al 2019 Bouckaert et al ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1006650 ;PMID: 30958812 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
11	Material Type: Article	MAGMA: generalized gene-set analysis of GWAS data PLoS computational biology, 2015-04, Vol.11 (4), p.e1004219-e1004219 [Peer Reviewed Journal] COPYRIGHT 2015 Public Library of Science ;COPYRIGHT 2015 Public Library of Science ;2015 de Leeuw et al 2015 de Leeuw et al ;2015 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: de Leeuw CA, Mooij JM, Heskes T, Posthuma D (2015) MAGMA: Generalized Gene-Set Analysis of GWAS Data. PLoS Comput Biol 11(4): e1004219. doi:10.1371/journal.pcbi.1004219 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1004219 ;PMID: 25885710 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
12	Material Type: Article	BEAST 2: a software platform for Bayesian evolutionary analysis PLoS computational biology, 2014-04, Vol.10 (4), p.e1003537 [Peer Reviewed Journal] COPYRIGHT 2014 Public Library of Science ;COPYRIGHT 2014 Public Library of Science ;2014 Bouckaert et al 2014 Bouckaert et al ;2014 Bouckaert et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Bouckaert R, Heled J, Kühnert D, Vaughan T, Wu C-H, et al. (2014) BEAST 2: A Software Platform for Bayesian Evolutionary Analysis. PLoS Comput Biol 10(4): e1003537. doi:10.1371/journal.pcbi.1003537 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1003537 ;PMID: 24722319 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
13	Material Type: Article	Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes PLoS biology, 2015-08, Vol.13 (8), p.e1002226-e1002226 [Peer Reviewed Journal] 2015 Bordenstein, Theis 2015 Bordenstein, Theis ;2015 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Bordenstein SR, Theis KR (2015) Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes. PLoS Biol 13(8): e1002226. doi:10.1371/journal.pbio.1002226 ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.1002226 ;PMID: 26284777 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
14	Material Type: Article	The extent and consequences of p-hacking in science PLoS biology, 2015-03, Vol.13 (3), p.e1002106-e1002106 [Peer Reviewed Journal] 2015 Head et al 2015 Head et al ;2015 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Head ML, Holman L, Lanfear R, Kahn AT, Jennions MD (2015) The Extent and Consequences of P-Hacking in Science. PLoS Biol 13(3): e1002106. doi:10.1371/journal.pbio.1002106 ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.1002106 ;PMID: 25768323 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
15	Material Type: Article	Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation PLoS biology, 2019-12, Vol.17 (12), p.e3000494-e3000494 [Peer Reviewed Journal] 2019 Upham et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2019 Upham et al 2019 Upham et al ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.3000494 ;PMID: 31800571 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
16	Material Type: Article	dGPredictor: Automated fragmentation method for metabolic reaction free energy prediction and de novo pathway design PLoS computational biology, 2021-09, Vol.17 (9) [Peer Reviewed Journal] ISSN: 1553-7358 ;EISSN: 1553-7358 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
17	Material Type: Article	Mathematical model of a personalized neoantigen cancer vaccine and the human immune system PLoS computational biology, 2021-09, Vol.17 (9) [Peer Reviewed Journal] ISSN: 1553-7358 ;EISSN: 1553-7358 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
18	Material Type: Article	Why are RNA virus mutation rates so damn high? PLoS biology, 2018-08, Vol.16 (8), p.e3000003-e3000003 [Peer Reviewed Journal] 2018 Siobain Duffy. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2018 Siobain Duffy 2018 Siobain Duffy ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.3000003 ;PMID: 30102691 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
19	Material Type: Article	Ten simple rules for reproducible computational research PLoS computational biology, 2013-10, Vol.9 (10), p.e1003285-e1003285 [Peer Reviewed Journal] COPYRIGHT 2013 Public Library of Science ;COPYRIGHT 2013 Public Library of Science ;2013 Sandve et al 2013 Sandve et al ;2013 Sandve et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Sandve GK, Nekrutenko A, Taylor J, Hovig E (2013) Ten Simple Rules for Reproducible Computational Research. PLoS Comput Biol 9(10): e1003285. doi:10.1371/journal.pcbi.1003285 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1003285 ;PMID: 24204232 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by
20	Material Type: Article	The gender gap in science: How long until women are equally represented? PLoS biology, 2018-04, Vol.16 (4), p.e2004956-e2004956 [Peer Reviewed Journal] 2018 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Holman L, Stuart-Fox D, Hauser CE (2018) The gender gap in science: How long until women are equally represented? PLoS Biol 16(4): e2004956. https://doi.org/10.1371/journal.pbio.2004956 ;2018 Holman et al 2018 Holman et al ;2018 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Holman L, Stuart-Fox D, Hauser CE (2018) The gender gap in science: How long until women are equally represented? PLoS Biol 16(4): e2004956. https://doi.org/10.1371/journal.pbio.2004956 ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.2004956 ;PMID: 29672508 Full text available View Online Details Recommendations Reviews Times Cited External Links Citations Cited by