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1
A molecular phylogeny of living primates
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A molecular phylogeny of living primates

PLoS genetics, 2011-03, Vol.7 (3), p.e1001342-e1001342 [Peer Reviewed Journal]

COPYRIGHT 2011 Public Library of Science ;COPYRIGHT 2011 Public Library of Science ;This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication. 2011 ;2011 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Citation: Perelman P, Johnson WE, Roos C, Seuánez HN, Horvath JE, et al. (2011) A Molecular Phylogeny of Living Primates. PLoS Genet 7(3): e1001342. doi:10.1371/journal.pgen.1001342 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1001342 ;PMID: 21436896

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2
Identifying a high fraction of the human genome to be under selective constraint using GERP
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Identifying a high fraction of the human genome to be under selective constraint using GERP

PLoS computational biology, 2010-12, Vol.6 (12), p.e1001025-e1001025 [Peer Reviewed Journal]

COPYRIGHT 2010 Public Library of Science ;COPYRIGHT 2010 Public Library of Science ;Davydov et al. 2010 ;2010 Davydov et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Davydov EV, Goode DL, Sirota M, Cooper GM, Sidow A, et al. (2010) Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++. PLoS Comput Biol 6(12): e1001025. doi:10.1371/journal.pcbi.1001025 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.1001025 ;PMID: 21152010

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3
Evidence that mutation is universally biased towards AT in bacteria
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Evidence that mutation is universally biased towards AT in bacteria

PLoS genetics, 2010-09, Vol.6 (9), p.e1001115-e1001115 [Peer Reviewed Journal]

COPYRIGHT 2010 Public Library of Science ;COPYRIGHT 2010 Public Library of Science ;Hershberg, Petrov. 2010 ;2010 Hershberg, Petrov. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Hershberg R, Petrov DA (2010) Evidence That Mutation Is Universally Biased towards AT in Bacteria. PLoS Genet 6(9): e1001115. doi:10.1371/journal.pgen.1001115 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1001115 ;PMID: 20838599

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4
Genomic hotspots for adaptation: the population genetics of Müllerian mimicry in the Heliconius melpomene clade
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Genomic hotspots for adaptation: the population genetics of Müllerian mimicry in the Heliconius melpomene clade

PLoS genetics, 2010-02, Vol.6 (2), p.e1000794-e1000794 [Peer Reviewed Journal]

COPYRIGHT 2010 Public Library of Science ;COPYRIGHT 2010 Public Library of Science ;Baxter et al. 2010 ;2010 Baxter et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Baxter SW, Nadeau NJ, Maroja LS, Wilkinson P, Counterman BA, et al. (2010) Genomic Hotspots for Adaptation: The Population Genetics of Müllerian Mimicry in the Heliconius melpomene Clade. PLoS Genet 6(2): e1000794. doi:10.1371/journal.pgen.1000794 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1000794 ;PMID: 20140188

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5
Adaptations to climate-mediated selective pressures in humans
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Adaptations to climate-mediated selective pressures in humans

PLoS genetics, 2011-04, Vol.7 (4), p.e1001375 [Peer Reviewed Journal]

COPYRIGHT 2011 Public Library of Science ;Hancock et al. 2011 ;2011 Hancock et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Hancock AM, Witonsky DB, Alkorta-Aranburu G, Beall CM, Gebremedhin A, et al. (2011) Adaptations to Climate-Mediated Selective Pressures in Humans. PLoS Genet 7(4): e1001375. doi:10.1371/journal.pgen.1001375 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1001375 ;PMID: 21533023

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6
Evidence of selection upon genomic GC-content in bacteria
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Evidence of selection upon genomic GC-content in bacteria

PLoS genetics, 2010-09, Vol.6 (9), p.e1001107-e1001107 [Peer Reviewed Journal]

COPYRIGHT 2010 Public Library of Science ;COPYRIGHT 2010 Public Library of Science ;Hildebrand et al. 2010 ;2010 Hildebrand et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Hildebrand F, Meyer A, Eyre-Walker A (2010) Evidence of Selection upon Genomic GC-Content in Bacteria. PLoS Genet 6(9): e1001107. doi:10.1371/journal.pgen.1001107 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1001107 ;PMID: 20838593

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7
Barcoding Nemo: DNA-Based Identifications for the Ornamental Fish Trade
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Barcoding Nemo: DNA-Based Identifications for the Ornamental Fish Trade

PloS one, 2009-07, Vol.4 (7), p.e6300-e6300 [Peer Reviewed Journal]

COPYRIGHT 2009 Public Library of Science ;2009 Steinke et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Steinke et al. 2009 ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0006300 ;PMID: 19621079

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8
Origin of saxitoxin biosynthetic genes in cyanobacteria
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Origin of saxitoxin biosynthetic genes in cyanobacteria

PloS one, 2009-06, Vol.4 (6), p.e5758-e5758 [Peer Reviewed Journal]

COPYRIGHT 2009 Public Library of Science ;2009 Moustafa et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Moustafa et al. 2009 ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0005758 ;PMID: 19484122

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9
Mining mammalian transcript data for functional long non-coding RNAs
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Mining mammalian transcript data for functional long non-coding RNAs

PloS one, 2010-04, Vol.5 (4), p.e10316 [Peer Reviewed Journal]

COPYRIGHT 2010 Public Library of Science ;COPYRIGHT 2010 Public Library of Science ;2010 Khachane, Harrison. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Khachane, Harrison. 2010 ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0010316 ;PMID: 20428234

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10
Assessing the evolutionary impact of amino acid mutations in the human genome
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Assessing the evolutionary impact of amino acid mutations in the human genome

PLoS genetics, 2008-05, Vol.4 (5), p.e1000083-e1000083 [Peer Reviewed Journal]

COPYRIGHT 2008 Public Library of Science ;Boyko et al. 2008 ;2008 Boyko et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Boyko AR, Williamson SH, Indap AR, Degenhardt JD, Hernandez RD, et al. (2008) Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome. PLoS Genet 4(5): e1000083. doi:10.1371/journal.pgen.1000083 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1000083 ;PMID: 18516229

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11
Infectious speciation revisited: impact of symbiont-depletion on female fitness and mating behavior of Drosophila paulistorum
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Infectious speciation revisited: impact of symbiont-depletion on female fitness and mating behavior of Drosophila paulistorum

PLoS pathogens, 2010-12, Vol.6 (12), p.e1001214-e1001214 [Peer Reviewed Journal]

COPYRIGHT 2010 Public Library of Science ;COPYRIGHT 2010 Public Library of Science ;Miller et al. 2010 ;2010 Miller et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Miller WJ, Ehrman L, Schneider D (2010) Infectious Speciation Revisited: Impact of Symbiont-Depletion on Female Fitness and Mating Behavior of Drosophila paulistorum. PLoS Pathog 6(12): e1001214. doi:10.1371/journal.ppat.1001214 ;ISSN: 1553-7374 ;ISSN: 1553-7366 ;EISSN: 1553-7374 ;DOI: 10.1371/journal.ppat.1001214 ;PMID: 21151959

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12
The evolution of mammalian gene families
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The evolution of mammalian gene families

PloS one, 2006-12, Vol.1 (1), p.e85-e85 [Peer Reviewed Journal]

COPYRIGHT 2006 Public Library of Science ;2006 Demuth et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Demuth et al. 2006 ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0000085 ;PMID: 17183716

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13
Mutation of a single residue renders human tetherin resistant to HIV-1 Vpu-mediated depletion
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Mutation of a single residue renders human tetherin resistant to HIV-1 Vpu-mediated depletion

PLoS pathogens, 2009-05, Vol.5 (5), p.e1000443-e1000443 [Peer Reviewed Journal]

COPYRIGHT 2009 Public Library of Science ;Gupta et al. 2009 ;2009 Gupta et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Gupta RK, Hué S, Schaller T, Verschoor E, Pillay D, et al. (2009) Mutation of a Single Residue Renders Human Tetherin Resistant to HIV-1 Vpu-Mediated Depletion. PLoS Pathog 5(5): e1000443. doi:10.1371/journal.ppat.1000443 ;ISSN: 1553-7374 ;ISSN: 1553-7366 ;EISSN: 1553-7374 ;DOI: 10.1371/journal.ppat.1000443 ;PMID: 19461879

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14
An insect herbivore microbiome with high plant biomass-degrading capacity
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An insect herbivore microbiome with high plant biomass-degrading capacity

PLoS genetics, 2010-09, Vol.6 (9), p.e1001129-e1001129 [Peer Reviewed Journal]

COPYRIGHT 2010 Public Library of Science ;COPYRIGHT 2010 Public Library of Science ;This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. 2010 ;2010 Public Library of Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Citation: Suen G, Scott JJ, Aylward FO, Adams SM, Tringe SG, et al. (2010) An Insect Herbivore Microbiome with High Plant Biomass-Degrading Capacity. PLoS Genet 6(9): e1001129. doi:10.1371/journal.pgen.1001129 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1001129 ;PMID: 20885794

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15
How and why chromosome inversions evolve
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How and why chromosome inversions evolve

PLoS biology, 2010-09, Vol.8 (9), p.e1000501 [Peer Reviewed Journal]

Mark Kirkpatrick. 2010 ;2010 Mark Kirkpatrick. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Kirkpatrick M (2010) How and Why Chromosome Inversions Evolve. PLoS Biol 8(9): e1000501. doi:10.1371/journal.pbio.1000501 ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.1000501 ;PMID: 20927412

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16
Incipient balancing selection through adaptive loss of aquaporins in natural Saccharomyces cerevisiae populations
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Incipient balancing selection through adaptive loss of aquaporins in natural Saccharomyces cerevisiae populations

PLoS genetics, 2010-04, Vol.6 (4), p.e1000893-e1000893 [Peer Reviewed Journal]

COPYRIGHT 2010 Public Library of Science ;COPYRIGHT 2010 Public Library of Science ;Will et al. 2010 ;2010 Will et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Will JL, Kim HS, Clarke J, Painter JC, Fay JC, et al. (2010) Incipient Balancing Selection through Adaptive Loss of Aquaporins in Natural Saccharomyces cerevisiae Populations. PLoS Genet 6(4): e1000893. doi:10.1371/journal.pgen.1000893 ;ISSN: 1553-7404 ;ISSN: 1553-7390 ;EISSN: 1553-7404 ;DOI: 10.1371/journal.pgen.1000893 ;PMID: 20369021

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17
Evolutionary relationships of wild hominids recapitulated by gut microbial communities
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Evolutionary relationships of wild hominids recapitulated by gut microbial communities

PLoS biology, 2010-11, Vol.8 (11), p.e1000546-e1000546 [Peer Reviewed Journal]

Ochman et al. 2010 ;2010 Ochman et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Ochman H, Worobey M, Kuo C-H, Ndjango J-BN, Peeters M, et al. (2010) Evolutionary Relationships of Wild Hominids Recapitulated by Gut Microbial Communities. PLoS Biol 8(11): e1000546. doi:10.1371/journal.pbio.1000546 ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.1000546 ;PMID: 21103409

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18
Microbial communication, cooperation and cheating: quorum sensing drives the evolution of cooperation in bacteria
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Microbial communication, cooperation and cheating: quorum sensing drives the evolution of cooperation in bacteria

PloS one, 2009-08, Vol.4 (8), p.e6655-e6655 [Peer Reviewed Journal]

COPYRIGHT 2009 Public Library of Science ;2009 Czárán, Hoekstra. This is an open-access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Czárán, Hoekstra. 2009 ;Wageningen University & Research ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0006655 ;PMID: 19684853

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19
A widespread chromosomal inversion polymorphism contributes to a major life-history transition, local adaptation, and reproductive isolation
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A widespread chromosomal inversion polymorphism contributes to a major life-history transition, local adaptation, and reproductive isolation

PLoS biology, 2010-09, Vol.8 (9), p.e1000500 [Peer Reviewed Journal]

Lowry, Willis. 2010 ;2010 Lowry, Willis. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Lowry DB, Willis JH (2010) A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition, Local Adaptation, and Reproductive Isolation. PLoS Biol 8(9): e1000500. doi:10.1371/journal.pbio.1000500 ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.1000500 ;PMID: 20927411

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20
VertNet: a new model for biodiversity data sharing
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VertNet: a new model for biodiversity data sharing

PLoS biology, 2010-02, Vol.8 (2), p.e1000309-e1000309 [Peer Reviewed Journal]

Constable et al. 2010 ;2010 Constable et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Constable H, Guralnick R, Wieczorek J, Spencer C, Peterson AT, et al. (2010) VertNet: A New Model for Biodiversity Data Sharing. PLoS Biol 8(2): e1000309. doi:10.1371/journal.pbio.1000309 ;ISSN: 1545-7885 ;ISSN: 1544-9173 ;EISSN: 1545-7885 ;DOI: 10.1371/journal.pbio.1000309 ;PMID: 20169109

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