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Material Type: Article
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A review of methods and databases for metagenomic classification and assemblyBriefings in bioinformatics, 2019-07, Vol.20 (4), p.1125-1136 [Peer Reviewed Journal]The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2017 ;The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com. ;The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com ;ISSN: 1467-5463 ;EISSN: 1477-4054 ;DOI: 10.1093/bib/bbx120 ;PMID: 29028872Full text available |
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Material Type: Article
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SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare?BMC genomics, 2017-03, Vol.18 (Suppl 2), p.114-114, Article 114 [Peer Reviewed Journal]2017. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2017 ;ISSN: 1471-2164 ;EISSN: 1471-2164 ;DOI: 10.1186/s12864-017-3501-4 ;PMID: 28361695Full text available |
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Material Type: Article
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Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4Nature biotechnology, 2023-11, Vol.41 (11), p.1633-1644 [Peer Reviewed Journal]2023. The Author(s). ;The Author(s) 2023. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2023 ;ISSN: 1087-0156 ;EISSN: 1546-1696 ;DOI: 10.1038/s41587-023-01688-w ;PMID: 36823356Full text available |
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Material Type: Article
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CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic dataGenome Biology, 2020-04, Vol.21 (1), p.103-15, Article 103 [Peer Reviewed Journal]2020. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2020 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-020-02014-2 ;PMID: 32345331Full text available |
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Material Type: Article
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metaFlye: scalable long-read metagenome assembly using repeat graphsNature methods, 2020-11, Vol.17 (11), p.1103-1110 [Peer Reviewed Journal]COPYRIGHT 2020 Nature Publishing Group ;The Author(s), under exclusive licence to Springer Nature America, Inc. 2020. ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-020-00971-x ;PMID: 33020656Full text available |
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Material Type: Article
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Gut microbiota dynamics in a prospective cohort of patients with post-acute COVID-19 syndromeGut, 2022-03, Vol.71 (3), p.544-552 [Peer Reviewed Journal]Author(s) (or their employer(s)) 2022. No commercial re-use. See rights and permissions. Published by BMJ. ;This article is made freely available for personal use in accordance with BMJ’s website terms and conditions for the duration of the covid-19 pandemic or until otherwise determined by BMJ. You may use, download and print the article for any lawful, non-commercial purpose (including text and data mining) provided that all copyright notices and trade marks are retained. https://bmj.com/coronavirus/usage ;Author(s) (or their employer(s)) 2021. No commercial re-use. See rights and permissions. Published by BMJ. 2022 ;ISSN: 0017-5749 ;EISSN: 1468-3288 ;DOI: 10.1136/gutjnl-2021-325989 ;PMID: 35082169Full text available |
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Material Type: Article
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Do the human gut metagenomic species possess the minimal set of core functionalities necessary for life?BMC genomics, 2020-09, Vol.21 (1), p.678-678, Article 678 [Peer Reviewed Journal]COPYRIGHT 2020 BioMed Central Ltd. ;COPYRIGHT 2020 BioMed Central Ltd. ;2020. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2020 ;ISSN: 1471-2164 ;EISSN: 1471-2164 ;DOI: 10.1186/s12864-020-07087-8 ;PMID: 32998695Full text available |
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Material Type: Article
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Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3eLife, 2021-05, Vol.10 [Peer Reviewed Journal]2021, Beghini et al. ;2021, Beghini et al. This work is published under https://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2021, Beghini et al 2021 Beghini et al ;ISSN: 2050-084X ;EISSN: 2050-084X ;DOI: 10.7554/eLife.65088 ;PMID: 33944776Full text available |
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Material Type: Article
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STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studiesThe Lancet infectious diseases, 2020-10, Vol.20 (10), p.e251-e260 [Peer Reviewed Journal]2020 Elsevier Ltd ;Copyright © 2020 Elsevier Ltd. All rights reserved. ;2020. Elsevier Ltd ;2020 Elsevier Ltd. All rights reserved. 2020 Elsevier Ltd ;ISSN: 1473-3099 ;EISSN: 1474-4457 ;DOI: 10.1016/S1473-3099(20)30199-7 ;PMID: 32768390Full text available |
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10 |
Material Type: Article
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Assessing taxonomic metagenome profilers with OPALGenome Biology, 2019-03, Vol.20 (1), p.51-51, Article 51 [Peer Reviewed Journal]Copyright © 2019. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-019-1646-y ;PMID: 30832730Full text available |
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11 |
Material Type: Article
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The human virome: assembly, composition and host interactionsNature reviews. Microbiology, 2021-08, Vol.19 (8), p.514-527 [Peer Reviewed Journal]2021. Springer Nature Limited. ;COPYRIGHT 2021 Nature Publishing Group ;Springer Nature Limited 2021. ;Springer Nature Limited 2021 ;ISSN: 1740-1526 ;EISSN: 1740-1534 ;DOI: 10.1038/s41579-021-00536-5 ;PMID: 33785903Full text available |
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Material Type: Article
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The structure and function of the global citrus rhizosphere microbiomeNature communications, 2018-11, Vol.9 (1), p.4894-10, Article 4894 [Peer Reviewed Journal]2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2018 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-018-07343-2 ;PMID: 30459421Full text available |
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Material Type: Article
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Diversity within species: interpreting strains in microbiomesNature reviews. Microbiology, 2020-09, Vol.18 (9), p.491-506 [Peer Reviewed Journal]COPYRIGHT 2020 Nature Publishing Group ;Springer Nature Limited 2020. ;ISSN: 1740-1526 ;EISSN: 1740-1534 ;DOI: 10.1038/s41579-020-0368-1 ;PMID: 32499497Full text available |
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Material Type: Article
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A metagenomics approach to investigate microbiome sociobiologyProceedings of the National Academy of Sciences - PNAS, 2021-03, Vol.118 (10), p.1 [Peer Reviewed Journal]Copyright National Academy of Sciences Mar 9, 2021 ;2021 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.2100934118 ;PMID: 33593943Full text available |
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15 |
Material Type: Article
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Complete, closed bacterial genomes from microbiomes using nanopore sequencingNature biotechnology, 2020-06, Vol.38 (6), p.701-707 [Peer Reviewed Journal]COPYRIGHT 2020 Nature Publishing Group ;The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2020 ;ISSN: 1087-0156 ;EISSN: 1546-1696 ;DOI: 10.1038/s41587-020-0422-6 ;PMID: 32042169Full text available |
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Material Type: Article
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Metagenomic Sequencing for Microbial DNA in Human Samples: Emerging Technological AdvancesInternational journal of molecular sciences, 2022-02, Vol.23 (4), p.2181 [Peer Reviewed Journal]2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2022 by the authors. 2022 ;ISSN: 1422-0067 ;ISSN: 1661-6596 ;EISSN: 1422-0067 ;DOI: 10.3390/ijms23042181 ;PMID: 35216302Full text available |
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17 |
Material Type: Article
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Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics dataMicrobiome, 2018-12, Vol.6 (1), p.226-226, Article 226 [Peer Reviewed Journal]COPYRIGHT 2018 BioMed Central Ltd. ;Copyright © 2018. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s). 2018 ;ISSN: 2049-2618 ;EISSN: 2049-2618 ;DOI: 10.1186/s40168-018-0605-2 ;PMID: 30558668Full text available |
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Material Type: Article
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A genomic catalog of Earth's microbiomesNature biotechnology, 2021-04, Vol.39 (4), p.499-509 [Peer Reviewed Journal]COPYRIGHT 2021 Nature Publishing Group ;The Author(s) 2020. corrected publication 2020, 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Distributed under a Creative Commons Attribution 4.0 International License ;The Author(s) 2020, corrected publication 2020, 2021 ;ISSN: 1087-0156 ;ISSN: 1546-1696 ;EISSN: 1546-1696 ;DOI: 10.1038/s41587-020-0718-6 ;PMID: 33169036Full text available |
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Material Type: Article
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Author Correction: The balance of metagenomic elements shapes the skin microbiome in acne and healthScientific reports, 2020-04, Vol.10 (1), p.6037-6037, Article 6037 [Peer Reviewed Journal]The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2020 ;ISSN: 2045-2322 ;EISSN: 2045-2322 ;DOI: 10.1038/s41598-020-62764-8 ;PMID: 32242146Full text available |
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Material Type: Article
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Clinical metagenomicsNature reviews. Genetics, 2019-06, Vol.20 (6), p.341-355 [Peer Reviewed Journal]COPYRIGHT 2019 Nature Publishing Group ;2019© Springer Nature Limited 2019 ;Springer Nature Limited 2019 ;ISSN: 1471-0056 ;EISSN: 1471-0064 ;DOI: 10.1038/s41576-019-0113-7 ;PMID: 30918369Full text available |