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1
The planktonic protist interactome: where do we stand after a century of research?
The planktonic protist interactome: where do we stand after a century of research?
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The planktonic protist interactome: where do we stand after a century of research?

The ISME Journal, 2020-02, Vol.14 (2), p.544-559 [Peer Reviewed Journal]

This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;info:eu-repo/semantics/openAccess ;The Author(s) 2019 ;ISSN: 1751-7362 ;EISSN: 1751-7370 ;DOI: 10.1038/s41396-019-0542-5 ;PMID: 31685936

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2
DNA extraction of microbial DNA directly from infected tissue: an optimized protocol for use in nanopore sequencing
DNA extraction of microbial DNA directly from infected tissue: an optimized protocol for use in nanopore sequencing
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DNA extraction of microbial DNA directly from infected tissue: an optimized protocol for use in nanopore sequencing

Scientific reports, 2020-02, Vol.10 (1), p.2985-2985, Article 2985 [Peer Reviewed Journal]

This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;info:eu-repo/semantics/openAccess ;The Author(s) 2020 ;ISSN: 2045-2322 ;EISSN: 2045-2322 ;DOI: 10.1038/s41598-020-59957-6 ;PMID: 32076089

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3
Altered Gut Microbial Metabolism of Essential Nutrients in Primary Sclerosing Cholangitis
Altered Gut Microbial Metabolism of Essential Nutrients in Primary Sclerosing Cholangitis
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Altered Gut Microbial Metabolism of Essential Nutrients in Primary Sclerosing Cholangitis

Gastroenterology (New York, N.Y. 1943), 2021-04 [Peer Reviewed Journal]

info:eu-repo/semantics/openAccess ;ISSN: 0016-5085 ;EISSN: 1528-0012 ;DOI: 10.1053/j.gastro.2020.12.058

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4
The gut microbiome in coronary artery disease and heart failure: Current knowledge and future directions
The gut microbiome in coronary artery disease and heart failure: Current knowledge and future directions
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The gut microbiome in coronary artery disease and heart failure: Current knowledge and future directions

EBioMedicine, 2020-02, Vol.52, p.102649-102649, Article 102649 [Peer Reviewed Journal]

2020 The Authors ;Copyright © 2020 The Authors. Published by Elsevier B.V. All rights reserved. ;info:eu-repo/semantics/openAccess ;2020 The Authors 2020 ;ISSN: 2352-3964 ;EISSN: 2352-3964 ;DOI: 10.1016/j.ebiom.2020.102649 ;PMID: 32062353

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5
Genome-wide epistasis and co-selection study using mutual information
Genome-wide epistasis and co-selection study using mutual information
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Genome-wide epistasis and co-selection study using mutual information

Nucleic acids research, 2019-10, Vol.47 (18), p.e112-e112 [Peer Reviewed Journal]

The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019 ;The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. ;info:eu-repo/semantics/openAccess ;ISSN: 0305-1048 ;EISSN: 1362-4962 ;DOI: 10.1093/nar/gkz656 ;PMID: 31361894

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6
Variola virus genome sequenced from an eighteenth-century museum specimen supports the recent origin of smallpox
Variola virus genome sequenced from an eighteenth-century museum specimen supports the recent origin of smallpox
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Variola virus genome sequenced from an eighteenth-century museum specimen supports the recent origin of smallpox

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2020-11, Vol.375 (1812), p.20190572-20190572 [Peer Reviewed Journal]

info:eu-repo/semantics/openAccess ;2020 The Authors. 2020 ;ISSN: 0962-8436 ;EISSN: 1471-2970 ;DOI: 10.1098/rstb.2019.0572 ;PMID: 33012235

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7
Protective and aggressive bacterial subsets and metabolites modify hepatobiliary inflammation and fibrosis in a murine model of PSC
Protective and aggressive bacterial subsets and metabolites modify hepatobiliary inflammation and fibrosis in a murine model of PSC
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Protective and aggressive bacterial subsets and metabolites modify hepatobiliary inflammation and fibrosis in a murine model of PSC

Gut, 2023-04, Vol.72 (4), p.671-685 [Peer Reviewed Journal]

Author(s) (or their employer(s)) 2023. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. ;2022 Author(s) (or their employer(s)) 2022. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. http://creativecommons.org/licenses/by-nc/4.0/ This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/4.0/ . Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2023 Author(s) (or their employer(s)) 2023. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. http://creativecommons.org/licenses/by-nc/4.0/ This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/4.0/ . Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;info:eu-repo/semantics/openAccess ;ISSN: 0017-5749 ;EISSN: 1468-3288 ;DOI: 10.1136/gutjnl-2021-326500 ;PMID: 35705368

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8
Enterosignatures define common bacterial guilds in the human gut microbiome
Enterosignatures define common bacterial guilds in the human gut microbiome
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Enterosignatures define common bacterial guilds in the human gut microbiome

Cell host & microbe, 2023-07, Vol.31 (7) [Peer Reviewed Journal]

info:eu-repo/semantics/openAccess ;Attribution ;ISSN: 1931-3128 ;EISSN: 1934-6069 ;DOI: 10.1016/j.chom.2023.05.024 ;PMID: 37339626

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9
Population genomics of post-glacial western Eurasia
Population genomics of post-glacial western Eurasia
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Population genomics of post-glacial western Eurasia

Nature (London), 2024-01, Vol.625 (7994), p.301-311 [Peer Reviewed Journal]

info:eu-repo/semantics/openAccess ;Attribution ;ISSN: 0028-0836 ;EISSN: 1476-4687 ;DOI: 10.1038/s41586-023-06865-0 ;PMID: 38200295

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10
Rapid Diagnostics of Orthopaedic-Implant-Associated Infections Using Nanopore Shotgun Metagenomic Sequencing on Tissue Biopsies
Rapid Diagnostics of Orthopaedic-Implant-Associated Infections Using Nanopore Shotgun Metagenomic Sequencing on Tissue Biopsies
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Rapid Diagnostics of Orthopaedic-Implant-Associated Infections Using Nanopore Shotgun Metagenomic Sequencing on Tissue Biopsies

Microorganisms (Basel), 2021-01, Vol.9 (1), p.97 [Peer Reviewed Journal]

2021. This work is licensed under http://creativecommons.org/licenses/by/3.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;info:eu-repo/semantics/openAccess ;2021 by the authors. 2021 ;ISSN: 2076-2607 ;EISSN: 2076-2607 ;DOI: 10.3390/microorganisms9010097 ;PMID: 33406597

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11
Metagenomic analysis of Mesolithic chewed pitch reveals poor oral health among stone age individuals
Metagenomic analysis of Mesolithic chewed pitch reveals poor oral health among stone age individuals
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Metagenomic analysis of Mesolithic chewed pitch reveals poor oral health among stone age individuals

Scientific reports, 2024, Vol.13 (1), p.22125-22125, Article 22125 [Peer Reviewed Journal]

2023. The Author(s). ;The Author(s) 2023. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2024. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;info:eu-repo/semantics/openAccess ;ISSN: 2045-2322 ;EISSN: 2045-2322 ;DOI: 10.1038/s41598-023-48762-6 ;PMID: 38238372

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12
Causal discovery for the microbiome
Causal discovery for the microbiome
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Causal discovery for the microbiome

The Lancet. Microbe, 2022-11, Vol.3 (11), p.e881-e887 [Peer Reviewed Journal]

Copyright © 2022 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY 4.0 license. Published by Elsevier Ltd.. All rights reserved. ;info:eu-repo/semantics/openAccess ;ISSN: 2666-5247 ;EISSN: 2666-5247 ;DOI: 10.1016/S2666-5247(22)00186-0 ;PMID: 36152674

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13
Combining population genomics with demographic analyses highlights habitat patchiness and larval dispersal as determinants of connectivity in coastal fish species
Combining population genomics with demographic analyses highlights habitat patchiness and larval dispersal as determinants of connectivity in coastal fish species
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Combining population genomics with demographic analyses highlights habitat patchiness and larval dispersal as determinants of connectivity in coastal fish species

Molecular ecology, 2022-05 [Peer Reviewed Journal]

info:eu-repo/semantics/openAccess ;ISSN: 0962-1083 ;EISSN: 1365-294X ;DOI: 10.1111/mec.16415

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14
Methane Producing and Oxidizing Microorganisms Display a High Resilience to Drought in a Swedish Hemi‐Boreal Mire
Methane Producing and Oxidizing Microorganisms Display a High Resilience to Drought in a Swedish Hemi‐Boreal Mire
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Methane Producing and Oxidizing Microorganisms Display a High Resilience to Drought in a Swedish Hemi‐Boreal Mire

Journal of geophysical research. Biogeosciences, 2023-09, Vol.128 (9), p.n/a [Peer Reviewed Journal]

2023. The Authors. ;2023. This article is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;info:eu-repo/semantics/openAccess ;ISSN: 2169-8953 ;EISSN: 2169-8961 ;DOI: 10.1029/2022JG007362

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15
Bioarchaeological insights into the last plague of Imola (1630-1632)
Bioarchaeological insights into the last plague of Imola (1630-1632)
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Bioarchaeological insights into the last plague of Imola (1630-1632)

Scientific reports, 2021-11, Vol.11 (1), p.22253-22253, Article 22253 [Peer Reviewed Journal]

2021. The Author(s). ;The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;info:eu-repo/semantics/openAccess ;The Author(s) 2021 ;ISSN: 2045-2322 ;EISSN: 2045-2322 ;DOI: 10.1038/s41598-021-98214-2 ;PMID: 34782694

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16
Genomic blueprint of a relapsing fever pathogen in 15th century Scandinavia
Genomic blueprint of a relapsing fever pathogen in 15th century Scandinavia
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Genomic blueprint of a relapsing fever pathogen in 15th century Scandinavia

Proceedings of the National Academy of Sciences - PNAS, 2018-10, Vol.115 (41), p.10422-10427 [Peer Reviewed Journal]

Volumes 1–89 and 106–115, copyright as a collective work only; author(s) retains copyright to individual articles ;Copyright © 2018 the Author(s). Published by PNAS. ;Copyright National Academy of Sciences Oct 9, 2018 ;info:eu-repo/semantics/openAccess ;Copyright © 2018 the Author(s). Published by PNAS. 2018 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1807266115 ;PMID: 30249639

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17
Ecological plasticity in the gastrointestinal microbiomes of Ethiopian Chlorocebus monkeys
Ecological plasticity in the gastrointestinal microbiomes of Ethiopian Chlorocebus monkeys
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Ecological plasticity in the gastrointestinal microbiomes of Ethiopian Chlorocebus monkeys

Scientific reports, 2018-01, Vol.8 (1), p.20-20, Article 20 [Peer Reviewed Journal]

2017. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;info:eu-repo/semantics/openAccess ;The Author(s) 2017 ;ISSN: 2045-2322 ;EISSN: 2045-2322 ;DOI: 10.1038/s41598-017-18435-2 ;PMID: 29311667

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18
Culture-Independent Genotyping, Virulence and Antimicrobial Resistance Gene Identification of Staphylococcus aureus from Orthopaedic Implant-Associated Infections
Culture-Independent Genotyping, Virulence and Antimicrobial Resistance Gene Identification of Staphylococcus aureus from Orthopaedic Implant-Associated Infections
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Culture-Independent Genotyping, Virulence and Antimicrobial Resistance Gene Identification of Staphylococcus aureus from Orthopaedic Implant-Associated Infections

Microorganisms (Basel), 2021-03, Vol.9 (4), p.707 [Peer Reviewed Journal]

2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;info:eu-repo/semantics/openAccess ;2021 by the authors. 2021 ;ISSN: 2076-2607 ;EISSN: 2076-2607 ;DOI: 10.3390/microorganisms9040707 ;PMID: 33808095

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19
Metagenomic Analysis Using Phylogenetic Placement—A Review of the First Decade
Metagenomic Analysis Using Phylogenetic Placement—A Review of the First Decade
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Metagenomic Analysis Using Phylogenetic Placement—A Review of the First Decade

Frontiers in bioinformatics, 2022-05, Vol.2, p.871393-871393 [Peer Reviewed Journal]

info:eu-repo/semantics/openAccess ;Copyright © 2022 Czech, Stamatakis, Dunthorn and Barbera. 2022 Czech, Stamatakis, Dunthorn and Barbera ;ISSN: 2673-7647 ;EISSN: 2673-7647 ;DOI: 10.3389/fbinf.2022.871393

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20
Differential response to prolonged amoxicillin treatment: long-term resilience of the microbiome versus long-lasting perturbations in the gut resistome
Differential response to prolonged amoxicillin treatment: long-term resilience of the microbiome versus long-lasting perturbations in the gut resistome
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Differential response to prolonged amoxicillin treatment: long-term resilience of the microbiome versus long-lasting perturbations in the gut resistome

Gut microbes, 2023, Vol.15 (1), p.2157200-2157200 [Peer Reviewed Journal]

2022 The Author(s). Published with license by Taylor & Francis Group, LLC. 2022 ;info:eu-repo/semantics/openAccess ;2022 The Author(s). Published with license by Taylor & Francis Group, LLC. 2022 The Author(s) ;ISSN: 1949-0976 ;EISSN: 1949-0984 ;DOI: 10.1080/19490976.2022.2157200 ;PMID: 36576106

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