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The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversityGenome research, 2020-01, Vol.30 (1), p.138-152 [Peer Reviewed Journal]2020 Zhou et al.; Published by Cold Spring Harbor Laboratory Press. ;Copyright Cold Spring Harbor Laboratory Press Jan 2020 ;Attribution ;2020 ;ISSN: 1088-9051 ;EISSN: 1549-5469 ;DOI: 10.1101/gr.251678.119 ;PMID: 31809257Full text available |
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Critical Assessment of Metagenome Interpretation: the second round of challengesNature methods, 2022-04, Vol.19 (4), p.429-440 [Peer Reviewed Journal]2022. The Author(s). ;The Author(s) 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;info:eu-repo/semantics/openAccess ;Attribution ;The Author(s) 2022 ;ISSN: 1548-7091 ;ISSN: 1548-7105 ;EISSN: 1548-7105 ;DOI: 10.1038/s41592-022-01431-4 ;PMID: 35396482Full text available |
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Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamicsNature communications, 2021-05, Vol.12 (1), p.3209-3209, Article 3209 [Peer Reviewed Journal]This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Distributed under a Creative Commons Attribution 4.0 International License ;This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2021 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-021-23553-7 ;PMID: 34050180Full text available |
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Material Type: Article
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Quality control of microbiota metagenomics by k-mer analysisBMC genomics, 2015-03, Vol.16 (1), p.183-183, Article 183 [Peer Reviewed Journal]COPYRIGHT 2015 BioMed Central Ltd. ;COPYRIGHT 2015 BioMed Central Ltd. ;Attribution ;Plaza Onate et al.; licensee BioMed Central. 2015 ;ISSN: 1471-2164 ;EISSN: 1471-2164 ;DOI: 10.1186/s12864-015-1406-7 ;PMID: 25887914Full text available |
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Material Type: Article
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Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communitiesEnvironmental microbiology, 2014-09, Vol.16 (9), p.2659-2671 [Peer Reviewed Journal]2013 Society for Applied Microbiology and John Wiley & Sons Ltd ;2013 Society for Applied Microbiology and John Wiley & Sons Ltd. ;Copyright © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1462-2912 ;EISSN: 1462-2920 ;DOI: 10.1111/1462-2920.12250 ;PMID: 24102695Full text available |
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Material Type: Article
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STRONG: metagenomics strain resolution on assembly graphsGenome Biology, 2021-07, Vol.22 (1), p.214-214, Article 214 [Peer Reviewed Journal]2021. The Author(s). ;2021. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Distributed under a Creative Commons Attribution 4.0 International License ;The Author(s) 2021 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;ISSN: 1465-6906 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-021-02419-7 ;PMID: 34311761Full text available |
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Material Type: Article
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Storage conditions of intestinal microbiota matter in metagenomic analysisBMC microbiology, 2012-07, Vol.12 (1), p.158-158, Article 158 [Peer Reviewed Journal]COPYRIGHT 2012 BioMed Central Ltd. ;COPYRIGHT 2012 BioMed Central Ltd. ;2012 Cardona et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ;Distributed under a Creative Commons Attribution 4.0 International License ;Copyright ©2012 Cardona et al.; licensee BioMed Central Ltd. 2012 Cardona et al.; licensee BioMed Central Ltd. ;ISSN: 1471-2180 ;EISSN: 1471-2180 ;DOI: 10.1186/1471-2180-12-158 ;PMID: 22846661Full text available |
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8 |
Material Type: Article
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Viruses of archaea: Structural, functional, environmental and evolutionary genomicsVirus research, 2018-01, Vol.244, p.181-193 [Peer Reviewed Journal]Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 0168-1702 ;EISSN: 1872-7492 ;DOI: 10.1016/j.virusres.2017.11.025 ;PMID: 29175107Digital Resources/Online E-Resources |
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Material Type: Article
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Exploring the Archaeal Virosphere by MetagenomicsViral Metagenomics, 2024, Vol.2732, p.1-22Attribution - NonCommercial ;ISBN: 9781071635148 ;ISBN: 107163514X ;DOI: 10.1007/978-1-0716-3515-5_1 ;PMID: 38060114Digital Resources/Online E-Resources |
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Material Type: Article
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In-depth resistome analysis by targeted metagenomicsMicrobiome, 2018-01, Vol.6 (1), p.11-11, Article 11 [Peer Reviewed Journal]COPYRIGHT 2018 BioMed Central Ltd. ;Attribution ;The Author(s). 2018 ;ISSN: 2049-2618 ;EISSN: 2049-2618 ;DOI: 10.1186/s40168-017-0387-y ;PMID: 29335005Full text available |
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11 |
Material Type: Article
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Reproducible protocols for metagenomic analysis of human faecal phageomesMicrobiome, 2018-04, Vol.6 (1), p.68-68, Article 68 [Peer Reviewed Journal]COPYRIGHT 2018 BioMed Central Ltd. ;Attribution ;The Author(s). 2018 ;ISSN: 2049-2618 ;EISSN: 2049-2618 ;DOI: 10.1186/s40168-018-0446-z ;PMID: 29631623Full text available |
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Material Type: Article
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Strainberry: automated strain separation in low-complexity metagenomes using long readsNature communications, 2021-07, Vol.12 (1), p.4485-4485, Article 4485 [Peer Reviewed Journal]2021. The Author(s). ;The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Attribution ;The Author(s) 2021 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-021-24515-9 ;PMID: 34301928Full text available |
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Material Type: Article
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Messages from the third International Conference on Clinical Metagenomics (ICCMg3)Microbes and infection, 2019-08, Vol.21, p.273-277 [Peer Reviewed Journal]Attribution - NonCommercial ;ISSN: 1286-4579 ;EISSN: 1769-714X ;DOI: 10.1016/j.micinf.2019.02.004 ;PMID: 30836173Digital Resources/Online E-Resources |
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Material Type: Article
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Marine DNA Viral Macro- and Microdiversity from Pole to PoleCell, 2019-05, Vol.177 (5), p.1109-1123.e14 [Peer Reviewed Journal]2019 Elsevier Inc. ;Copyright © 2019 Elsevier Inc. All rights reserved. ;Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 0092-8674 ;EISSN: 1097-4172 ;DOI: 10.1016/j.cell.2019.03.040 ;PMID: 31031001Full text available |
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Material Type: Article
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Megataxonomy and global ecology of the virosphereThe ISME Journal, 2024-01, Vol.18 (1) [Peer Reviewed Journal]Attribution ;ISSN: 1751-7362 ;EISSN: 1751-7370 ;DOI: 10.1093/ismejo/wrad042Digital Resources/Online E-Resources |
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16 |
Material Type: Article
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MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomicsMolecular ecology resources, 2020-07, Vol.20, p.892-905 [Peer Reviewed Journal]Distributed under a Creative Commons Attribution 4.0 International License ;ISSN: 1755-098X ;EISSN: 1755-0998 ;DOI: 10.1111/1755-0998.13160Digital Resources/Online E-Resources |
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Material Type: Article
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MINTIA: a metagenomic INserT integrated assembly and annotation toolPeerJ (San Francisco, CA), 2021-09, Vol.9, p.e11885-e11885, Article e11885 [Peer Reviewed Journal]2021 Bardou et al. ;COPYRIGHT 2021 PeerJ. Ltd. ;2021 Bardou et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Attribution ;2021 Bardou et al. 2021 Bardou et al. ;ISSN: 2167-8359 ;EISSN: 2167-8359 ;DOI: 10.7717/peerj.11885 ;PMID: 34692239Full text available |
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18 |
Material Type: Article
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Phage-Host Prediction Using a Computational Tool Coupled with 16S rRNA Gene Amplicon SequencingViruses, 2023-01, Vol.15 (1), p.76 [Peer Reviewed Journal]2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Distributed under a Creative Commons Attribution 4.0 International License ;2022 by the authors. 2022 ;ISSN: 1999-4915 ;EISSN: 1999-4915 ;DOI: 10.3390/v15010076 ;PMID: 36680116Full text available |
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Material Type: Article
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Marine Synechococcus picocyanobacteria: Light utilization across latitudesProceedings of the National Academy of Sciences - PNAS, 2021-09, Vol.118 (38) [Peer Reviewed Journal]Copyright National Academy of Sciences Sep 21, 2021 ;Distributed under a Creative Commons Attribution 4.0 International License ;2021 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.2111300118 ;PMID: 34518213Full text available |
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Characterisation of the Viral Community Associated with the Alfalfa Weevil ( Hypera postica ) and Its Host Plant, Alfalfa ( Medicago sativa )Viruses, 2021-04, Vol.13 (5), p.791 [Peer Reviewed Journal]2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Attribution ;2021 by the authors. 2021 ;ISSN: 1999-4915 ;EISSN: 1999-4915 ;DOI: 10.3390/v13050791 ;PMID: 33925168Full text available |