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1
APTAnet: an atom-level peptide-TCR interaction affinity prediction model
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APTAnet: an atom-level peptide-TCR interaction affinity prediction model

Biophysics reports, 2024-02, Vol.10 (1), p.1-14 [Peer Reviewed Journal]

The Author(s) 2024. ;The Author(s) 2024 2024 The Author(s) ;ISSN: 2364-3439 ;EISSN: 2364-3420 ;DOI: 10.52601/bpr.2023.230037 ;PMID: 38737473

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2
Neoadjuvant chemoradiotherapy plus surgery versus active surveillance for oesophageal cancer: a stepped-wedge cluster randomised trial
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Neoadjuvant chemoradiotherapy plus surgery versus active surveillance for oesophageal cancer: a stepped-wedge cluster randomised trial

BMC cancer, 2018-02, Vol.18 (1), p.142-12, Article 142 [Peer Reviewed Journal]

COPYRIGHT 2018 BioMed Central Ltd. ;COPYRIGHT 2018 BioMed Central Ltd. ;The Author(s). 2018 ;ISSN: 1471-2407 ;EISSN: 1471-2407 ;DOI: 10.1186/s12885-018-4034-1 ;PMID: 29409469

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3
EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
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EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data

Genome Biology, 2019-03, Vol.20 (1), p.63-63, Article 63 [Peer Reviewed Journal]

2019. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-019-1662-y ;PMID: 30902100

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4
Effects of pre-analytical processes on blood samples used in metabolomics studies
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Effects of pre-analytical processes on blood samples used in metabolomics studies

Analytical and bioanalytical chemistry, 2015-07, Vol.407 (17), p.4879-4892 [Peer Reviewed Journal]

The Author(s) 2015 ;COPYRIGHT 2015 Springer ;Springer-Verlag Berlin Heidelberg 2015 ;ISSN: 1618-2642 ;EISSN: 1618-2650 ;DOI: 10.1007/s00216-015-8565-x ;PMID: 25736245

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5
Validation of an LC-MS/MS-based dilute-and-shoot approach for the quantification of > 500 mycotoxins and other secondary metabolites in food crops: challenges and solutions
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Validation of an LC-MS/MS-based dilute-and-shoot approach for the quantification of > 500 mycotoxins and other secondary metabolites in food crops: challenges and solutions

Analytical and bioanalytical chemistry, 2020-04, Vol.412 (11), p.2607-2620 [Peer Reviewed Journal]

The Author(s) 2020 ;COPYRIGHT 2020 Springer ;The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1618-2642 ;EISSN: 1618-2650 ;DOI: 10.1007/s00216-020-02489-9 ;PMID: 32078002

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6
Advanced LC–MS-based methods to study the co-occurrence and metabolization of multiple mycotoxins in cereals and cereal-based food
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Advanced LC–MS-based methods to study the co-occurrence and metabolization of multiple mycotoxins in cereals and cereal-based food

Analytical and bioanalytical chemistry, 2018-01, Vol.410 (3), p.801-825 [Peer Reviewed Journal]

The Author(s) 2017 ;COPYRIGHT 2018 Springer ;Analytical and Bioanalytical Chemistry is a copyright of Springer, (2017). All Rights Reserved. ;The Author(s) 2017. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;ISSN: 1618-2642 ;EISSN: 1618-2650 ;DOI: 10.1007/s00216-017-0750-7 ;PMID: 29273904

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7
Differential expression analysis for sequence count data
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Differential expression analysis for sequence count data

Genome biology, 2010-10, Vol.11 (10), p.R106-R106, Article R106 [Peer Reviewed Journal]

Copyright ©2010 Anders et al 2010 Anders et al ;ISSN: 1474-760X ;ISSN: 1465-6906 ;EISSN: 1474-760X ;EISSN: 1465-6914 ;DOI: 10.1186/gb-2010-11-10-r106 ;PMID: 20979621

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8
Giotto: a toolbox for integrative analysis and visualization of spatial expression data
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Giotto: a toolbox for integrative analysis and visualization of spatial expression data

Genome Biology, 2021-03, Vol.22 (1), p.78-78, Article 78 [Peer Reviewed Journal]

2021. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2021 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-021-02286-2 ;PMID: 33685491

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9
Cancer neoantigen prioritization through sensitive and reliable proteogenomics analysis
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Cancer neoantigen prioritization through sensitive and reliable proteogenomics analysis

Nature communications, 2020-04, Vol.11 (1), p.1759-1759, Article 1759 [Peer Reviewed Journal]

The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2020 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-020-15456-w ;PMID: 32273506

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10
Recommendations for core critical care ultrasound competencies as a part of specialist training in multidisciplinary intensive care: a framework proposed by the European Society of Intensive Care Medicine (ESICM)
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Recommendations for core critical care ultrasound competencies as a part of specialist training in multidisciplinary intensive care: a framework proposed by the European Society of Intensive Care Medicine (ESICM)

Critical care (London, England), 2020-07, Vol.24 (1), p.393-393, Article 393 [Peer Reviewed Journal]

COPYRIGHT 2020 BioMed Central Ltd. ;2020. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Distributed under a Creative Commons Attribution 4.0 International License ;The Author(s) 2020 ;ISSN: 1364-8535 ;EISSN: 1466-609X ;DOI: 10.1186/s13054-020-03099-8 ;PMID: 32620166

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11
Melding the Old with the New: Trends in Methods Used to Identify, Monitor, and Control Microorganisms on Cultural Heritage Materials
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Melding the Old with the New: Trends in Methods Used to Identify, Monitor, and Control Microorganisms on Cultural Heritage Materials

Microbial ecology, 2018-07, Vol.76 (1), p.64-80 [Peer Reviewed Journal]

Springer Science+Business Media New York 2016 ;Microbial Ecology is a copyright of Springer, (2016). All Rights Reserved. ;ISSN: 0095-3628 ;EISSN: 1432-184X ;DOI: 10.1007/s00248-016-0770-4 ;PMID: 27117796

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12
GSVA: gene set variation analysis for microarray and RNA-seq data
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GSVA: gene set variation analysis for microarray and RNA-seq data

BMC bioinformatics, 2013-01, Vol.14 (1), p.7-7, Article 7 [Peer Reviewed Journal]

COPYRIGHT 2013 BioMed Central Ltd. ;2013 Hänzelmann et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ;info:eu-repo/semantics/openAccess © Hänzelam et al. Creative Commons Attribution License http://creativecommons.org/licenses/by/2.0/ http://creativecommons.org/licenses/by/2.0/ ;Copyright © 2013 Hänzelmann et al.; licensee BioMed Central Ltd. 2013 Hänzelmann et al.; licensee BioMed Central Ltd. ;ISSN: 1471-2105 ;EISSN: 1471-2105 ;DOI: 10.1186/1471-2105-14-7 ;PMID: 23323831

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13
Maximizing binary interactome mapping with a minimal number of assays
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Maximizing binary interactome mapping with a minimal number of assays

Nature communications, 2019-08, Vol.10 (1), p.3907-13, Article 3907 [Peer Reviewed Journal]

2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Attribution ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-11809-2 ;PMID: 31467278

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14
Clinical applications of indocyanine green (ICG) enhanced fluorescence in laparoscopic surgery
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Clinical applications of indocyanine green (ICG) enhanced fluorescence in laparoscopic surgery

Surgical endoscopy, 2015-07, Vol.29 (7), p.2046-2055 [Peer Reviewed Journal]

The Author(s) 2014 ;Springer Science+Business Media New York 2015 ;ISSN: 0930-2794 ;EISSN: 1432-2218 ;DOI: 10.1007/s00464-014-3895-x ;PMID: 25303914

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15
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
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Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Nature communications, 2019-06, Vol.10 (1), p.2674-17, Article 2674 [Peer Reviewed Journal]

2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;info:eu-repo/semantics/openAccess ;info:eu-repo/semantics/openAccess © The Author(s) 2019. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. http://creativecommons.org/licenses/by/4.0/ ;The Author(s) 2019 ;ISSN: 2041-1723 ;EISSN: 2041-1723 ;DOI: 10.1038/s41467-019-09799-2 ;PMID: 31209238

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16
A guide to large-scale RNA sample preparation
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A guide to large-scale RNA sample preparation

Analytical and bioanalytical chemistry, 2018-05, Vol.410 (14), p.3239-3252 [Peer Reviewed Journal]

The Author(s) 2018 ;COPYRIGHT 2018 Springer ;Analytical and Bioanalytical Chemistry is a copyright of Springer, (2018). All Rights Reserved. ;ISSN: 1618-2642 ;ISSN: 1618-2650 ;EISSN: 1618-2650 ;DOI: 10.1007/s00216-018-0943-8 ;PMID: 29546546

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17
CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq
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CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq

Genome Biology, 2016-04, Vol.17 (1), p.77-77, Article 77 [Peer Reviewed Journal]

2016. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Hashimshony et al. 2016 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-016-0938-8 ;PMID: 27121950

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18
Eleven grand challenges in single-cell data science
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Eleven grand challenges in single-cell data science

Genome Biology, 2020-02, Vol.21 (1), p.31-35, Article 31 [Peer Reviewed Journal]

2020. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2020 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-020-1926-6 ;PMID: 32033589

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19
ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases
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ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases

BMC genomics, 2014-04, Vol.15 (1), p.284-284 [Peer Reviewed Journal]

COPYRIGHT 2014 BioMed Central Ltd. ;COPYRIGHT 2014 BioMed Central Ltd. ;2014 Shen et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. ;Copyright © 2014 Shen et al.; licensee BioMed Central Ltd. 2014 Shen et al.; licensee BioMed Central Ltd. ;ISSN: 1471-2164 ;EISSN: 1471-2164 ;DOI: 10.1186/1471-2164-15-284 ;PMID: 24735413

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20
PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
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PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

Genome Biology, 2019-03, Vol.20 (1), p.59-9, Article 59 [Peer Reviewed Journal]

2019. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2019 ;ISSN: 1474-760X ;ISSN: 1474-7596 ;EISSN: 1474-760X ;DOI: 10.1186/s13059-019-1663-x ;PMID: 30890159

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