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| Result Number | Material Type | Add to My Shelf Action | Record Details and Options |
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Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMapNature protocols, 2019-02, Vol.14 (2), p.482-517 [Peer Reviewed Journal]COPYRIGHT 2019 Nature Publishing Group ;COPYRIGHT 2019 Nature Publishing Group ;2019© The Author(s), under exclusive licence to Springer Nature America, Inc. 2019 ;ISSN: 1754-2189 ;EISSN: 1750-2799 ;DOI: 10.1038/s41596-018-0103-9 ;PMID: 30664679Full text available |
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AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations [version 1; peer review: 2 approved]F1000 research, 2016, Vol.5, p.1717-1717 [Peer Reviewed Journal]Copyright: © 2016 Kucera M et al. ;Copyright: © 2016 Kucera M et al. This work is licensed under the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Copyright: © 2016 Kucera M et al. 2016 ;ISSN: 2046-1402 ;EISSN: 2046-1402 ;DOI: 10.12688/f1000research.9090.1 ;PMID: 27830058Full text available |
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Enrichment map: a network-based method for gene-set enrichment visualization and interpretationPloS one, 2010-11, Vol.5 (11), p.e13984 [Peer Reviewed Journal]COPYRIGHT 2010 Public Library of Science ;COPYRIGHT 2010 Public Library of Science ;2010 Merico et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Merico et al. 2010 ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0013984 ;PMID: 21085593Full text available |
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RCy3: Network biology using Cytoscape from within R [version 1; peer review: 2 approved]F1000 research, 2019, Vol.8, p.1774 [Peer Reviewed Journal]Copyright: © 2019 Gustavsen JA et al. ;ISSN: 2046-1402 ;EISSN: 2046-1402 ;DOI: 10.12688/f1000research.20887.1 ;PMID: 31819800Full text available |
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Distinct DNA methylation patterns associated with treatment resistance in metastatic castration resistant prostate cancerScientific reports, 2021-03, Vol.11 (1), p.6630-6630, Article 6630 [Peer Reviewed Journal]The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s) 2021 ;ISSN: 2045-2322 ;EISSN: 2045-2322 ;DOI: 10.1038/s41598-021-85812-3 ;PMID: 33758253Full text available |
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Control of tissue development and cell diversity by cell cycle-dependent transcriptional filteringeLife, 2021-07, Vol.10 [Peer Reviewed Journal]COPYRIGHT 2021 eLife Science Publications, Ltd. ;2021, Abou Chakra et al. This work is published under https://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2021, Abou Chakra et al 2021 Abou Chakra et al ;ISSN: 2050-084X ;EISSN: 2050-084X ;DOI: 10.7554/eLife.64951 ;PMID: 34212855Full text available |
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Integration of biological networks and gene expression data using CytoscapeNature protocols, 2007-10, Vol.2 (10), p.2366-2382 [Peer Reviewed Journal]COPYRIGHT 2007 Nature Publishing Group ;Copyright Nature Publishing Group Oct 2007 ;2007 Nature Publishing Group 2007 ;ISSN: 1754-2189 ;EISSN: 1750-2799 ;DOI: 10.1038/nprot.2007.324 ;PMID: 17947979Full text available |
| 8 |
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PSICQUIC and PSISCORE: accessing and scoring molecular interactionsNature methods, 2011-07, Vol.8 (7), p.528-529 [Peer Reviewed Journal]COPYRIGHT 2011 Nature Publishing Group ;Copyright Nature Publishing Group Jul 2011 ;2011 Nature America, Inc. All rights reserved. 2011 ;ISSN: 1548-7091 ;EISSN: 1548-7105 ;DOI: 10.1038/nmeth.1637 ;PMID: 21716279Full text available |
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Integrative Cancer Pharmacogenomics to Infer Large-Scale Drug TaxonomyCancer research (Chicago, Ill.), 2017-06, Vol.77 (11), p.3057-3069 [Peer Reviewed Journal]2017 American Association for Cancer Research. ;Copyright American Association for Cancer Research, Inc. Jun 1, 2017 ;ISSN: 0008-5472 ;EISSN: 1538-7445 ;DOI: 10.1158/0008-5472.CAN-17-0096 ;PMID: 28314784Full text available |
| 10 |
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Cardioprotective Signature of Short-Term Caloric RestrictionPloS one, 2015-06, Vol.10 (6), p.e0130658-e0130658 [Peer Reviewed Journal]COPYRIGHT 2015 Public Library of Science ;COPYRIGHT 2015 Public Library of Science ;2015 Noyan et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;2015 Noyan et al 2015 Noyan et al ;ISSN: 1932-6203 ;EISSN: 1932-6203 ;DOI: 10.1371/journal.pone.0130658 ;PMID: 26098549Full text available |
| 11 |
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netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks [version 2; peer review: 2 approved]F1000 research, 2021, Vol.9, p.1239-1239 [Peer Reviewed Journal]Copyright: © 2021 Pai S et al. ;Copyright: © 2021 Pai S et al. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Copyright: © 2021 Pai S et al. 2021 ;ISSN: 2046-1402 ;EISSN: 2046-1402 ;DOI: 10.12688/f1000research.26429.2 ;PMID: 33628435Full text available |
| 12 |
Material Type: Article
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Exploring targets of TET2-mediated methylation reprogramming as potential discriminators of prostate cancer progressionClinical epigenetics, 2019-03, Vol.11 (1), p.54-19, Article 54 [Peer Reviewed Journal]COPYRIGHT 2019 BioMed Central Ltd. ;2019. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;The Author(s). 2019 ;ISSN: 1868-7075 ;ISSN: 1868-7083 ;EISSN: 1868-7083 ;DOI: 10.1186/s13148-019-0651-z ;PMID: 30917865Full text available |
| 13 |
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Unbiased phosphoproteomic method identifies the initial effects of a methacrylic acid copolymer on macrophagesProceedings of the National Academy of Sciences - PNAS, 2015-08, Vol.112 (34), p.10673-10678 [Peer Reviewed Journal]Volumes 1–89 and 106–112, copyright as a collective work only; author(s) retains copyright to individual articles ;Copyright National Academy of Sciences Aug 25, 2015 ;ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1508826112 ;PMID: 26261332Full text available |
| 14 |
Material Type: Article
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RCy3: Network biology using Cytoscape from within R [version 3; peer review: 3 approved]F1000 research, 2019-01, Vol.8, p.1774-1774 [Peer Reviewed Journal]Copyright: © 2019 Gustavsen JA et al. ;Copyright: © 2019 Gustavsen JA et al. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Copyright: © 2019 Gustavsen JA et al. 2019 ;ISSN: 2046-1402 ;EISSN: 2046-1402 ;DOI: 10.12688/f1000research.20887.3 ;PMID: 31819800Full text available |
| 15 |
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A Lentiviral Functional Proteomics Approach Identifies Chromatin Remodeling Complexes Important for the Induction of PluripotencyMolecular & cellular proteomics, 2010-05, Vol.9 (5), p.811-823 [Peer Reviewed Journal]2010 © 2010 ASBMB. Currently published by Elsevier Inc; originally published by American Society for Biochemistry and Molecular Biology. ;2010 by The American Society for Biochemistry and Molecular Biology, Inc. ;ISSN: 1535-9476 ;EISSN: 1535-9484 ;DOI: 10.1074/mcp.M000002-MCP201 ;PMID: 20305087Full text available |
| 16 |
Material Type: Article
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Constitutively active calcineurin induces cardiac endoplasmic reticulum stress and protects against apoptosis that is mediated by α-crystallin-BProceedings of the National Academy of Sciences - PNAS, 2010-10, Vol.107 (43), p.18481-18486 [Peer Reviewed Journal]ISSN: 0027-8424 ;EISSN: 1091-6490 ;DOI: 10.1073/pnas.1013555107 ;PMID: 20937869Full text available |
| 17 |
Material Type: Article
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Social Network: a Cytoscape app for visualizing co-authorship networks [version 3; peer review: 1 approved, 2 approved with reservations]F1000 research, 2015, Vol.4, p.481-481 [Peer Reviewed Journal]Copyright: © 2015 Kofia V et al. ;Copyright: © 2015 Kofia V et al. This work is licensed under the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. ;Copyright: © 2015 Kofia V et al. 2015 ;ISSN: 2046-1402 ;EISSN: 2046-1402 ;DOI: 10.12688/f1000research.6804.3 ;PMID: 26949516Full text available |
| 18 |
Material Type: Article
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Comparative Proteomics Profiling of a Phospholamban Mutant Mouse Model of Dilated Cardiomyopathy Reveals Progressive Intracellular Stress ResponsesMolecular & cellular proteomics, 2008-03, Vol.7 (3), p.519-533 [Peer Reviewed Journal]2008 © 2008 ASBMB. Currently published by Elsevier Inc; originally published by American Society for Biochemistry and Molecular Biology. ;ISSN: 1535-9476 ;EISSN: 1535-9484 ;DOI: 10.1074/mcp.M700245-MCP200 ;PMID: 18056057Full text available |
| 19 |
Material Type: Article
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RCy3: Network biology using Cytoscape from within R [version 2; peer review: 3 approved]F1000 research, 2019, Vol.8, p.1774 [Peer Reviewed Journal]Copyright: © 2019 Gustavsen JA et al. ;ISSN: 2046-1402 ;EISSN: 2046-1402 ;DOI: 10.12688/f1000research.20887.2Full text available |
| 20 |
Material Type: Article
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Structure-templated predictions of novel protein interactions from sequence informationPLoS computational biology, 2007-09, Vol.3 (9), p.1783-1789 [Peer Reviewed Journal]COPYRIGHT 2007 Public Library of Science ;2007 Betel et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Betel D, Breitkreuz KE, Isserlin R, Dewar-Darch D, Tyers M, et al. (2007) Structure-Templated Predictions of Novel Protein Interactions from Sequence Information. PLoS Comput Biol 3(9): e182. doi:10.1371/journal.pcbi.0030182 ;2007 Betel et al. 2007 ;ISSN: 1553-7358 ;ISSN: 1553-734X ;EISSN: 1553-7358 ;DOI: 10.1371/journal.pcbi.0030182 ;PMID: 17892321Full text available |
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